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Author Chinnaiyan [39 articles]

Recent papers posted to CiteULike by the author Chinnaiyan.
  • Bioinformatics Approaches in the Study of Cancer
    Current Molecular Medicine, Vol. 7, No. 1. (February 2007), pp. 133-141.
    by Hanauer, A David, Rhodes, R Daniel, Sinha-Kumar, Chandan, Chinnaiyan, M Arul
    posted to cancer_genome_atlas by srp33 on 2008-08-01 18:31:28 as **
  • Molecular profiling of human prostate tissues: insights into gene expression patterns of prostate development during puberty.
    The FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 19, No. 2. (February 2005), pp. 243-245.
    by SM Dhanasekaran, A Dash, J Yu, IP Maine, B Laxman, SA Tomlins, CJ Creighton, A Menon, MA Rubin, AM Chinnaiyan
    posted to bph by mtagaya on 2008-07-29 02:07:59 as **
  • Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer
    Cancer Res, Vol. 62, No. 15. (1 August 2002), pp. 4427-4433.
    by Daniel R Rhodes, Terrence R Barrette, Mark A Rubin, Debashis Ghosh, Arul M Chinnaiyan
    posted to statics microarray by kengg on 2008-07-23 13:57:57 as ** along with 4 people and 1 group srp33 hawkeyehammer ugengma waghsk Indigene
  • Genomic outlier profile analysis: mixture models, null hypotheses, and nonparametric estimation.
    Biostatistics (Oxford, England) (6 June 2008)
    by Debashis Ghosh, Arul M M Chinnaiyan
    posted to statistics microarray by jyuh on 2008-07-14 04:51:33 as **
  • Feature selection and molecular classification of cancer using genetic programming.
    Neoplasia, Vol. 9, No. 4. (April 2007), pp. 292-303.
    by J Yu, J Yu, AA Almal, SM Dhanasekaran, D Ghosh, WP Worzel, AM Chinnaiyan
    posted to selection programming herman genetic feature by ptrobajo on 2008-07-12 22:09:23 as ** along with 1 person jyuh
  • Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
    Science, Vol. 310, No. 5748. (28 October 2005), pp. 644-648.
    by SA Tomlins, DR Rhodes, S Perner, SM Dhanasekaran, R Mehra, XW Sun, S Varambally, X Cao, J Tchinda, R Kuefer, C Lee, JE Montie, RB Shah, KJ Pienta, MA Rubin, AM Chinnaiyan
    posted to no-tag by winterschlaefer on 2008-06-30 15:27:25 as ** along with 5 people oelemento kentsis jfr tuck emb51
  • The role of SPINK1 in ETS rearrangement-negative prostate cancers.
    Cancer cell, Vol. 13, No. 6. (June 2008), pp. 519-528.
    by SA Tomlins, DR Rhodes, J Yu, S Varambally, R Mehra, S Perner, F Demichelis, BE Helgeson, B Laxman, DS Morris, Q Cao, X Cao, O Andrén, K Fall, L Johnson, JT Wei, RB Shah, H Al-Ahmadie, JA Eastham, SE Eggener, SW Fine, K Hotakainen, UH Stenman, A Tsodikov, WL Gerald, H Lilja, VE Reuter, PW Kantoff, PT Scardino, MA Rubin, AS Bjartell, AM Chinnaiyan
    posted to no-tag by Terkko on 2008-06-11 11:25:25 as **
  • Integrative molecular concept modeling of prostate cancer progression
    Nature Genetics, Vol. 39, No. 1. (17 December 2006), pp. 41-51.
    by Scott A Tomlins, Rohit Mehra, Daniel R Rhodes, Xuhong Cao, Lei Wang, Saravana M Dhanasekaran, Shanker Kalyana-Sundaram, John T Wei, Mark A Rubin, Kenneth J Pienta, Rajal B Shah, Arul M Chinnaiyan
    posted to gsea by ihpark on 2008-06-11 05:11:09 as ** along with 6 people srp33 kentsis jfr shigepong xingxu daed
  • From bytes to bedside: data integration and computational biology for translational cancer research.
    PLoS Comput Biol, Vol. 3, No. 2. (23 February 2007)
    by JP Mathew, BS Taylor, GD Bader, S Pyarajan, M Antoniotti, AM Chinnaiyan, C Sander, SJ Burakoff, B Mishra
    posted to translational_research by oelemento on 2008-06-09 16:17:53 as ** along with 4 people frohike srp33 jfr kynn
  • A Systems Approach to Model Metastatic Progression
    Cancer Res, Vol. 66, No. 11. (1 June 2006), pp. 5537-5539.
    by Barry S Taylor, Sooryanarayana Varambally, Arul M Chinnaiyan
    posted to data_aggregation by srp33 on 2008-05-28 17:19:28 as **
  • Molecular concepts analysis links tumors, pathways, mechanisms, and drugs.
    Neoplasia, Vol. 9, No. 5. (May 2007), pp. 443-454.
    by DR Rhodes, S Kalyana-Sundaram, SA Tomlins, V Mahavisno, N Kasper, R Varambally, TR Barrette, D Ghosh, S Varambally, AM Chinnaiyan
    posted to pathway_analysis gene_sets by srp33 on 2008-05-21 19:54:13 as ** along with 2 people jfr waghsk
  • Integrating biomedical knowledge to model pathways of prostate cancer progression.
    Cell cycle (Georgetown, Tex.), Vol. 6, No. 10. (May 2007), pp. 1177-1187.
    by DS Morris, SA Tomlins, DR Rhodes, R Mehra, RB Shah, AM Chinnaiyan
    posted to pathway_analysis drug_discovery by srp33 on 2008-05-14 20:59:48 as **
  • Integrative analysis of the cancer transcriptome.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by DR Rhodes, AM Chinnaiyan
    posted to pathway_analysis meta-analysis by srp33 on 2008-05-14 20:43:01 as ** along with 5 people and 2 groups waghsk aalibes textoris ealloza shikin BioinfoCIPF GeneGo
  • Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
    PNAS, Vol. 101, No. 25. (22 June 2004), pp. 9309-9314.
    by Daniel R Rhodes, Jianjun Yu, K Shanker, Nandan Deshpande, Radhika Varambally, Debashis Ghosh, Terrence Barrette, Akhilesh Pandey, Arul M Chinnaiyan
    posted to pathway_analysis microarray meta-analysis by srp33 on 2008-05-14 20:37:35 as ** along with 2 people and 1 group hawkeyehammer ugengma Indigene
  • Feature Selection and Molecular Classification of Cancer Using Genetic Programming
    Neoplasia, Vol. 9, No. 4. (April 2007), pp. 292-303.
    by Yu, Jianjun, Yu, Jindan, Almal, A Arpit, Dhanasekaran, M Saravana, Ghosh, Debashis, Worzel, P William, Chinnaiyan, M Arul
    posted to no-tag by sventura on 2008-05-12 12:42:05 as ** along with 1 person xtizon
  • notes Molecular characterization of TMPRSS2-ERG gene fusion in the NCI-H660 prostate cancer cell line: a new perspective for an old model.
    Neoplasia (New York, N.Y.), Vol. 9, No. 3. (March 2007), pp. 200-206.
    by KD Mertz, SR Setlur, SM Dhanasekaran, F Demichelis, S Perner, S Tomlins, J Tchinda, B Laxman, RL Vessella, R Beroukhim, C Lee, AM Chinnaiyan, MA Rubin
    posted to prostate_cancer cancer by oelemento on 2008-05-05 05:03:57 as **
  • Bioinformatics approaches in the study of cancer.
    Curr Mol Med, Vol. 7, No. 1. (February 2007), pp. 133-141.
    by DA Hanauer, DR Rhodes, C Sinha-Kumar, AM Chinnaiyan
    posted to bioinformatics review by jfr on 2008-04-16 17:46:29 as ** along with 1 person jyuh
  • Probabilistic model of the human protein-protein interaction network
    Nature Biotechnology, Vol. 23, No. 8., pp. 951-959.
    by Daniel R Rhodes, Scott A Tomlins, Sooryanarayana Varambally, Vasudeva Mahavisno, Terrence Barrette, Shanker Kalyana-Sundaram, Debashis Ghosh, Akhilesh Pandey, Arul M Chinnaiyan
    posted to data_integration network_ppi by phoenixzxl on 2008-04-07 09:42:16 as ** along with 12 people and 2 groups kentsis lfriedl balajis opheliav wnpx nickluscombe eukfn iris_2001 antonkratz mingzhi maralena penpen926 kdl EBI-regulation
  • A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments
    BMC Bioinformatics, Vol. 8 (27 September 2007), 364.
    by Hyungwon Choi, Ronglai Shen, Arul M Chinnaiyan, Debashis Ghosh
    posted to biostatistics meta-analysis microarray statistics by akastrin on 2008-03-21 12:46:05 as ** along with 3 people jfr julesyoo waghsk
  • ONCOMINE: a cancer microarray database and integrated data-mining platform.
    Neoplasia, Vol. 6, No. 1. (b 2004), pp. 1-6.
    by DR Rhodes, J Yu, K Shanker, N Deshpande, R Varambally, D Ghosh, T Barrette, A Pandey, AM Chinnaiyan
    posted to cancer database genomics by shikin on 2008-02-12 15:14:01 as **
  • Alpha-methylacyl-CoA racemase protein expression is associated with the degree of differentiation in breast cancer using quantitative image analysis.
    Cancer Epidemiol Biomarkers Prev, Vol. 14, No. 6. (June 2005), pp. 1418-1423.
    by AK Witkiewicz, S Varambally, R Shen, R Mehra, MS Sabel, D Ghosh, AM Chinnaiyan, MA Rubin, CG Kleer
    posted to omr by waghsk on 2008-01-08 07:17:05 as **
  • Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles.
    Neoplasia, Vol. 9, No. 2. (February 2007), pp. 166-180.
    by DR Rhodes, S Kalyana-Sundaram, V Mahavisno, R Varambally, J Yu, BB Briggs, TR Barrette, MJ Anstet, C Kincead-Beal, P Kulkarni, S Varambally, D Ghosh, AM Chinnaiyan
    posted to omr by waghsk on 2007-12-04 11:55:37 as ***** along with 2 people jfr frohike
  • The Registry Case Finding Engine: An Automated Tool to Identify Cancer Cases from Unstructured, Free-Text Pathology Reports and Clinical Notes
    Journal of the American College of Surgeons, Vol. 205, No. 5. (November 2007), pp. 690-697.
    by David A Hanauer, Gretchen Miela, Arul M Chinnaiyan, Alfred E Chang, Douglas W Blayney
    posted to cancer case finding methodology registry us by lougonsalves on 2007-11-21 15:53:27 as **
  • Eigengene-based linear discriminant model for tumor classification using gene expression microarray data.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2635-2642.
    by R Shen, D Ghosh, A Chinnaiyan, Z Meng
    posted to cancer classifier miroarray by shigepong on 2007-11-19 09:12:33 as ***** along with 1 person jfr
  • Integrative analysis of genomic aberrations associated with prostate cancer progression.
    Cancer Res, Vol. 67, No. 17. (1 September 2007), pp. 8229-8239.
    by JH Kim, SM Dhanasekaran, R Mehra, SA Tomlins, W Gu, J Yu, C Kumar-Sinha, X Cao, A Dash, L Wang, D Ghosh, K Shedden, JE Montie, MA Rubin, KJ Pienta, RB Shah, AM Chinnaiyan
    posted to cancer cnv prostate by xingxu on 2007-11-16 18:30:18 as read along with 1 person rdiaz
  • Autoantibody signatures in prostate cancer.
    N Engl J Med, Vol. 353, No. 12. (22 September 2005), pp. 1224-1235.
    by X Wang, J Yu, A Sreekumar, S Varambally, R Shen, D Giacherio, R Mehra, JE Montie, KJ Pienta, MG Sanda, PW Kantoff, MA Rubin, JT Wei, D Ghosh, AM Chinnaiyan
    posted to medicine mesophysics molbio by kentsis on 2007-08-18 16:53:51 as **
  • A hierarchical network of transcription factors governs androgen receptor-dependent prostate cancer growth.
    Mol Cell, Vol. 27, No. 3. (3 August 2007), pp. 380-392.
    by Q Wang, W Li, XS Liu, JS Carroll, OA Jänne, EK Keeton, AM Chinnaiyan, KJ Pienta, M Brown
    posted to no-tag by Terkko on 2007-08-13 11:09:12 as **
  • Distinct classes of chromosomal rearrangements create oncogenic ETS gene fusions in prostate cancer
    Nature, Vol. 448, No. 7153. (2007), pp. 595-599.
    by Scott A Tomlins, Bharathi Laxman, Saravana M Dhanasekaran, Beth E Helgeson, Xuhong Cao, David S Morris, Anjana Menon, Xiaojun Jing, Qi Cao, Bo Han, Jindan Yu, Lei Wang, James E Montie, Mark A Rubin, Kenneth J Pienta, Diane Roulston, Rajal B Shah, Sooryanarayana Varambally, Rohit Mehra, Arul M Chinnaiyan
    posted to ets-family by sbranco on 2007-08-02 14:15:51 as *** along with 1 person xingxu
  • Comparison of monoclonal antibody (P504S) and polyclonal antibody to alpha methylacyl-CoA racemase (AMACR) in the work-up of prostate cancer
    Histopathology, Vol. 47, No. 6. (December 2005), pp. 587-596.
    by LP Kunju, AM Chinnaiyan, RB Shah
    posted to ab comparison by holmesjo on 2007-07-24 11:09:18 as **
  • Empirical Bayes identification [correction of identication] of tumor progression genes from microarray data.
    Biom J, Vol. 49, No. 1. (February 2007), pp. 68-77.
    by D Ghosh, AM Chinnaiyan
    posted to fdr feature_selection by jfr on 2007-07-03 17:05:51 as *
  • Decreased alpha-methylacyl CoA racemase expression in localized prostate cancer is associated with an increased rate of biochemical recurrence and cancer-specific death.
    Cancer Epidemiol Biomarkers Prev, Vol. 14, No. 6. (June 2005), pp. 1424-1432.
    by MA Rubin, TA Bismar, O Andrén, L Mucci, R Kim, R Shen, D Ghosh, JT Wei, AM Chinnaiyan, HO Adami, PW Kantoff, JE Johansson
    posted to cancer prostate by holmesjo on 2007-05-29 13:12:42 as **
  • Enhancing the antitumor activity of ErbB blockade with histone deacetylase (HDAC) inhibition.
    Int J Cancer, Vol. 118, No. 4. (15 February 2006), pp. 1041-1050.
    by P Chinnaiyan, S Varambally, SA Tomlins, S Ray, S Huang, AM Chinnaiyan, PM Harari
    posted to hdac inhibitor by pjasper on 2007-04-18 20:51:24 as **
  • Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data.
    BMC Genomics, Vol. 5, No. 1. (2004)
    by R Shen, D Ghosh, AM Chinnaiyan
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:32:46 as ** along with 1 person Ao_Li2007
  • Genes regulated by estrogen in breast tumor cells in vitro are similarly regulated in vivo in tumor xenografts and human breast tumors.
    Genome Biol, Vol. 7, No. 4. (2006)
    by CJ Creighton, KE Cordero, JM Larios, RS Miller, MD Johnson, AM Chinnaiyan, ME Lippman, JM Rae
    posted to estrogen breast_cancer by jfr on 2007-01-18 10:26:13 as ***
  • Development of human protein reference database as an initial platform for approaching systems biology in humans.
    Genome Res, Vol. 13, No. 10. (October 2003), pp. 2363-2371.
    by S Peri, JD Navarro, R Amanchy, TZ Kristiansen, CK Jonnalagadda, V Surendranath, V Niranjan, B Muthusamy, TK Gandhi, M Gronborg, N Ibarrola, N Deshpande, K Shanker, HN Shivashankar, BP Rashmi, MA Ramya, Z Zhao, KN Chandrika, N Padma, HC Harsha, AJ Yatish, MP Kavitha, M Menezes, DR Choudhury, S Suresh, N Ghosh, R Saravana, S Chandran, S Krishna, M Joy, SK Anand, V Madavan, A Joseph, GW Wong, WP Schiemann, SN Constantinescu, L Huang, R Khosravi-Far, H Steen, M Tewari, S Ghaffari, GC Blobe, CV Dang, JG Garcia, J Pevsner, ON Jensen, P Roepstorff, KS Deshpande, AM Chinnaiyan, A Hamosh, A Chakravarti, A Pandey
    posted to no-tag by bundschu on 2006-10-07 16:39:53 as ** along with 2 people and 1 group miguel maryee generif_paper
  • Identification of genes modulated in rheumatoid arthritis using complementary DNA microarray analysis of lymphoblastoid B cell lines from disease-discordant monozygotic twins.
    Arthritis Rheum, Vol. 54, No. 7. (27 June 2006), pp. 2047-2060.
    by Christian S S Haas, Chad J J Creighton, Xiujun Pi, Ira Maine, Alisa E E Koch, G Kenneth K Haines, Song Ling, Arul M M Chinnaiyan, Joseph Holoshitz
    posted to autoimmune screen by lhonigberg on 2006-07-05 15:28:42 as **
  • Mining for regulatory programs in the cancer transcriptome
    Nature Genetics, Vol. 37, No. 6. (26 May 2005), pp. 579-583.
    by Daniel R Rhodes, Shanker Kalyana-Sundaram, Vasudeva Mahavisno, Terrence R Barrette, Debashis Ghosh, Arul M Chinnaiyan
    posted to medicine mesophysics by kentsis on 2005-11-09 12:31:00 as ** along with 2 people tmmurali marcora
  • The unfolded protein response modulates toxicity of the expanded glutamine androgen receptor.
    J Biol Chem, Vol. 280, No. 22. (3 June 2005), pp. 21264-21271.
    by M Thomas, Z Yu, N Dadgar, S Varambally, J Yu, AM Chinnaiyan, AP Lieberman
    posted to ar polyglutamine sbma by inbetweener on 2005-08-22 13:47:26 as *****
  • Molecular signatures of sepsis: multiorgan gene expression profiles of systemic inflammation.
    Am J Pathol, Vol. 159, No. 4. (October 2001), pp. 1199-1209.
    by AM Chinnaiyan, M Huber-Lang, C Kumar-Sinha, TR Barrette, S Shankar-Sinha, VJ Sarma, VA Padgaonkar, PA Ward
    posted to genomique puces_adn sepsis transcriptome by textoris on 2005-06-28 05:27:58 as read
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