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Author Rozowsky [14 articles]

Recent papers posted to CiteULike by the author Rozowsky.
  • The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 732-745.
    by Joel S Rozowsky, Daniel Newburger, Fred Sayward, Jiaqian Wu, Greg Jordan, Jan O Korbel, Ugrappa Nagalakshmi, Jin Yang, Deyou Zheng, Roderic Guigo, Thomas R Gingeras, Sherman Weissman, Perry Miller, Michael Snyder, Mark B Gerstein
    posted to annotation by gjuggler on 2008-07-24 00:04:00 as ** along with 4 people and 1 group jasonflannick djkt olympos ghattem Bioinformatics
  • Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.
    Genome Res (21 November 2006)
    by Olof Emanuelsson, Ugrappa Nagalakshmi, Deyou Zheng, Joel S S Rozowsky, Alexander E E Urban, Jiang Du, Zheng Lian, Viktor Stolc, Sherman Weissman, Michael Snyder, Mark Gerstein
    posted to encode by jasonflannick on 2008-07-11 17:16:15 as ** along with 1 person eckart_bindewald
  • What is a gene, post-ENCODE? History and updated definition.
    Genome Research, Vol. 17, No. 6. (June 2007), pp. 669-681.
    by Mark B Gerstein, Can Bruce, Joel S Rozowsky, Deyou Zheng, Jiang Du, Jan O Korbel, Olof Emanuelsson, Zhengdong D Zhang, Sherman Weissman, Michael Snyder
    posted to review operons gene evolution by mjoach on 2008-07-07 12:05:31 as read along with 26 people and 4 groups altotor tharris hpaces jyuh carolh12 eweaver dpollard balicea dchughes dullhunk madhadron cottrell grahamc egonw ghattem sujaikumar Garamonfok PunkRock jasonbobe PredictER cabbagezs Jporci kmdaily krokicki antonkratz Minty Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 898-909.
    by Ghia M Euskirchen, Joel S Rozowsky, Chia-Lin Wei, Wah H Lee, Zhengdong D Zhang, Stephen Hartman, Olof Emanuelsson, Viktor Stolc, Sherman Weissman, Mark B Gerstein, Yijun Ruan, Michael Snyder
    posted to no-tag by isimpson on 2008-07-02 14:11:08 as ** along with 6 people and 4 groups kengg jtaylor ghattem epigenetics blobbybirdman idonaldson Bioinformatics Plantandetc UH - Computational Biology BergmanLab
  • A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to transcriptome tiling methods bioinformatics by xingxu on 2008-05-06 20:13:09 as ** along with 7 people and 2 groups miguel tuck eckart_bindewald djkt SeungjoonOh blobbybirdman inesdesantiago Bioinformatics UH - Computational Biology
  • Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    Genome Res. (7 February 2008), gr.7080508.
    by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu
    posted to data chip-chip application by gracio on 2008-05-05 20:45:59 as ** along with 10 people and 2 groups stajich lp2 magusina jfr kengg djkt xiaobeizhao cabbagezs idonaldson caseybrown Berkeley Mycology BergmanLab
  • Assessing the need for sequence-based normalization in tiling microarray experiments.
    Bioinformatics (25 March 2007)
    by Thomas E E Royce, Joel S S Rozowsky, Mark B B Gerstein
    posted to tiling normalization microarray by bertelsen on 2008-04-29 11:16:33 as ** along with 3 people and 1 group jfr mmarchin nicholso Bioinformatics
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to no-tag by anka on 2008-04-28 08:17:44 as ** along with 16 people and 2 groups nklee aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb EisenLab cis-regulatory-evolution
  • Assessing the need for sequence-based normalization in tiling microarray experiments
    Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 988-997.
    by Royce, E Thomas, Rozowsky, S Joel, Gerstein, B Mark
    posted to tiling microarray by talponer on 2008-04-25 16:19:08 as ** along with 1 person magusina
  • Global identification of human transcribed sequences with genome tiling arrays.
    Science, Vol. 306, No. 5705. (24 December 2004), pp. 2242-2246.
    by P Bertone, V Stolc, TE Royce, JS Rozowsky, AE Urban, X Zhu, JL Rinn, W Tongprasit, M Samanta, S Weissman, M Gerstein, M Snyder
    posted to array tiling by elfar on 2008-04-14 13:04:35 as ** along with 3 people and 2 groups miguel kaspermunch nickluscombe Bioinformatics EBI-regulation
  • Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies.
    Methods Enzymol, Vol. 411 (2006), pp. 282-311.
    by TE Royce, JS Rozowsky, NM Luscombe, O Emanuelsson, H Yu, X Zhu, M Snyder, MB Gerstein
    posted to microarray proteinmicroarray by baldigroup on 2008-03-16 22:51:34 as ****
  • Tilescope: online analysis pipeline for high-density tiling microarray data
    Genome Biology, Vol. 8 (14 May 2007), R81.
    by Zhengdong D Zhang, Joel Rozowsky, Hugo YK Lam, Jiang Du, Michael Snyder, Mark Gerstein
    posted to chip by caseybrown on 2008-02-09 20:15:09 as read along with 2 people jfr inesdesantiago
  • Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome
    Genome Biology, Vol. 9 (03 January 2008), R3.
    by Jia Q Wu, Jiang Du, Joel Rozowsky, Zhengdong Zhang, Alexander E Urban, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder
    posted to annotation expression by djkt on 2008-01-12 17:05:20 as **
  • Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification.
    Nucleic Acids Res (7 August 2007)
    by Thomas E E Royce, Joel S S Rozowsky, Mark B B Gerstein
    posted to microarray_technology probe_design by jfr on 2007-12-04 16:20:16 as * along with 2 people sebastien_vigneau niallhaslam
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