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Author Xu [772 articles]

Recent papers posted to CiteULike by the author Xu.
  • Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters
    Supercomputing, 2006. SC '06. Proceedings of the ACM/IEEE SC 2006 Conference (2006), pp. 43-43.
    by KJ Bowers, E Chow, Huafeng Xu, RO Dror, MP Eastwood, BA Gregersen, JL Klepeis, I Kolossvary, MA Moraes, FD Sacerdoti, JK Salmon, Yibing Shan, DE Shaw
    posted to md engine desmond algorithm by dimka on 2008-07-24 19:09:14 as **
  • X-inactivation in female human embryonic stem cells is in a nonrandom pattern and prone to epigenetic alterations.
    Proc Natl Acad Sci U S A (13 March 2008)
    by Yin Shen, Youko Matsuno, Shaun D D Fouse, Nagesh Rao, Sierra Root, Renhe Xu, Matteo Pellegrini, Arthur D D Riggs, Guoping Fan
    posted to xci by inesdesantiago on 2008-07-24 17:07:32 as ** along with 2 people sebastien_vigneau epigenetics
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to wide_mapping transcription by inesdesantiago on 2008-07-24 14:52:36 as **** along with 3 people kengg caseybrown jjray
  • Monte Carlo cross-validation for selecting a model and estimating the prediction error in multivariate calibration
    Journal of Chemometrics, Vol. 18, No. 2. (2004), pp. 112-120.
    by Qing-Song Xu, Yi-Zeng Liang, Yi-Ping Du
    posted to no-tag by ucbcjbm on 2008-07-24 10:54:16 as read along with 1 person nigelsim
  • A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
    Genome Biology, Vol. 9, No. Suppl 1. (2008)
    by Lourdes P Castillo, Murat Tasan, Chad Myers, Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Lin, Gabriel Berriz, Francis Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David Hill, David W Farley, Chris Grouios, Debajyoti Ray, Judith Blake, Minghua Deng, Michael Jordan, William Noble, Quaid Morris, Judith K Seetharaman, Ziv B Joseph, Ting Chen, Fengzhu Sun, Olga Troyanskaya, Edward Marcotte, Dong Xu, Timothy Hughes, Frederick Roth
    posted to transcriptomics prediction function by aconesa on 2008-07-24 07:29:46 as **
  • Reliable and Efficient Download Delivery with Raptor Codes
    by Tiago Gasiba, Thomas Stockhammer, Wen Xu
    posted to raptor multicast coding 3gpp by alexzeh to the group IKR Fountain for Wireless on 2008-07-24 07:07:33 as **
  • Modelling hydrological consequences of climate change—Progress and challenges
    Advances in Atmospheric Sciences, Vol. 22, No. 6. (1 November 2005), pp. 789-797.
    by Chong-Yu Xu, Elin Widén, Sven Halldin
    posted to hydrology climate-change by mrobles on 2008-07-23 23:39:50 as read
  • A Review on Monthly Water Balance Models for Water Resources Investigations
    Water Resources Management, Vol. 12, No. 1. (1 February 1998), pp. 20-50.
    by CY Xu, VP Singh
    posted to water-balance-models hydrology drought-incides by mrobles on 2008-07-23 23:24:06 as read along with 1 person calamar
  • Identifying functional neighborhoods within the cell nucleus: Proximity analysis of early S-phase replicating chromatin domains to sites of transcription, RNA polymerase II, HP1gamma, matrin 3 and SAF-A.
    Journal of cellular biochemistry (10 July 2008)
    by Kishore S S Malyavantham, Sambit Bhattacharya, Marcos Barbeitos, Lopamudra Mukherjee, Jinhui Xu, Frank O O Fackelmayer, Ronald Berezney
    posted to spatial-organization replication by inesdesantiago on 2008-07-23 19:15:21 as *****
  • Human lupus T cells resist inactivation and escape death by upregulating COX-2.
    Nature medicine, Vol. 10, No. 4. (April 2004), pp. 411-415.
    by L Xu, L Zhang, Y Yi, HK Kang, SK Datta
    posted to vmsr_publications by vmsr on 2008-07-22 21:50:39 as **
  • Genomic and proteomic analysis of mammary tumors arising in transgenic mice.
    Journal of proteome research, Vol. 4, No. 6. (c 2005), pp. 2088-2098.
    by L Xie, BJ Xu, AE Gorska, Y Shyr, SA Schwartz, N Cheng, S Levy, B Bierie, RM Caprioli, HL Moses
    posted to vmsr_publications by vmsr on 2008-07-22 20:25:02 as ** along with 1 person slevy03
  • Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer
    Genome Biology, Vol. 8 (05 July 2007), R131.
    by Sergio Kaiser, Young-Kyu Park, Jeffrey L Franklin, Richard B Halberg, Ming Yu, Walter J Jessen, Johannes Freudenberg, Xiaodi Chen, Kevin Haigis, Anil G Jegga, Sue Kong, Bhuvaneswari Sakthivel, Huan Xu, Timothy Reichling, Mohammad Azhar, Gregory P Boivin, Reade B Roberts, Anika Bissahoyo, Fausto Gonzales, Greg L Bloom, Stephen Eschrich, Scott L Carter, Jeremy E Aronow, John Kleimeyer, Michael Kleimeyer, Vivek Ramaswamy, Stephen H Settle, Braden Boone, Shawn Levy, Jonathan M Graff, Thomas Doetschman, Joanna Groden, William F Dove, David W Threadgill, Timothy J Yeatman, Robert J Coffey, Bruce J Aronow
    posted to vmsr_publications by vmsr on 2008-07-22 18:34:14 as ** along with 2 people slevy03 jfr
  • Strong association of de novo copy number mutations with sporadic schizophrenia.
    Nature genetics (30 May 2008)
    by Bin Xu, J Louw L Roos, Shawn Levy, E J J van Rensburg, Joseph A A Gogos, Maria Karayiorgou
    posted to vmsr_publications by vmsr on 2008-07-22 18:04:30 as ** along with 1 person slevy03
  • NMR and X-ray Crystallography, Complementary Tools in Structural Proteomics of Small Proteins
    J. Am. Chem. Soc., Vol. 127, No. 47. (30 November 2005), pp. 16512-16517.
    by AA Yee, A Savchenko, A Ignachenko, J Lukin, X Xu, T Skarina, E Evdokimova, CS Liu, A Semesi, V Guido, AM Edwards, CH Arrowsmith
    posted to x-ray nmr by viktor21614 on 2008-07-22 16:06:36 as ** along with 1 person rph
  • Climatic and anthropogenic factors affecting river discharge to the global ocean, 1951-2000
    Global and Planetary Change, Vol. 62, No. 3-4. (June 2008), pp. 187-194.
    by JD Milliman, KL Farnsworth, PD Jones, KH Xu, LC Smith
    posted to trends rivers reservoirs precipitation irrigation global evapotranspiration discharge climate_change climate anthropogenic by emayorga on 2008-07-22 15:47:41 as *****
  • Speech Visualization based on Locally Linear Embedding (LLE) for the Hearing Impaired
    (2008), pp. 502-505.
    by Wang Xu, Xue Lifang, Yang Dan, Han Zhiyan
    posted to manifold lle by yairgo on 2008-07-22 13:17:16 as **
  • Coexistence of competing orders with two energy gaps in real and momentum space in high-Tc superconductor Bi2Sr2-xLaxCuO6+delta
    (21 Jul 2008)
    by JH Ma, ZH Pan, FC Niestemski, M Neupane, YM Xu, P Richard, K Nakayama, T Sato, T Takahashi, HQ Luo, L Fang, HH Wen, Ziqiang Wang, H Ding, V Madhavan
    posted to hightc_superconductivity by nafets on 2008-07-22 12:58:15 as **
  • Location anonymity in continuous location-based services
    (2007), pp. 1-8.
    by Toby Xu, Ying Cai
    posted to privacy location-based-services location anonymity by tnhh on 2008-07-22 10:36:58 as **
  • Gene by environment interactions.
    Genetic epidemiology, Vol. 31 Suppl 1 (2007)
    by RC Culverhouse, BK Suarez, L Beckmann, P Chen, YS Chen, YF Chiu, J Chang-Claude, A Dempfle, R Hein, R Kazma, JJ Lebrec, S Lee, S Lim, BS Maher, T Park, H Perdry, KS Wang, PP Wolkow, W Xu
    posted to reviews genotype-to-phenotype genome-interactome gene-gene evolutionary-genomics epigenetics ecophysiology cross-talk bio-stat by balicea on 2008-07-22 04:04:38 as ** along with 1 person jyuh
  • Loss of the retinoblastoma tumor suppressor: differential action on transcriptional programs related to cell cycle control and immune function
    Oncogene, Vol. aop, No. current.
    by MP Markey, J Bergseid, EE Bosco, K Stengel, H Xu, CN Mayhew, SJ Schwemberger, WA Braden, Y Jiang, GF Babcock, AG Jegga, BJ Aronow, MF Reed, JYJ Wang, ES Knudsen
    posted to rb knockout by catcremona on 2008-07-21 20:40:59 as **
  • Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators
    Nature, Vol. 415, No. 6871. (31 January 2002), pp. 549-553.
    by Stephen J Demarest, Maria Martinez-Yamout, John Chung, Hongwu Chen, Wei Xu, Jane H Dyson, Ronald M Evans, Peter E Wright
    posted to synergy solution p160 nuclear-receptor nmr cbp by mapplab on 2008-07-21 17:09:27 as **
  • Chromosomal rearrangement inferred from comparisons of twelve Drosophila genomes.
    Genetics (13 July 2008)
    by Arjun Bhutkar, Stephen W W Schaeffer, Susan M M Russo, Mu Xu, Temple F F Smith, William M M Gelbart
    posted to no-tag by isimpson on 2008-07-21 14:00:54 as ****
  • Sonic Hedgehog and Other Soluble Factors from Differentiating Embryoid Bodies Inhibit Pancreas Development
    Stem Cells, Vol. 25, No. 5. (1 May 2007), pp. 1156-1165.
    by Josue K Mfopou, Veronique De Groote, Xiabo Xu, Harry Heimberg, Luc Bouwens
    posted to mesc_project by lukaswindhager on 2008-07-21 13:13:13 as *
  • Caveolae and endothelial dysfunction: filling the caves in cardiovascular disease.
    European journal of pharmacology, Vol. 585, No. 2-3. (13 May 2008), pp. 256-260.
    by Y Xu, H Buikema, WH van Gilst, RH Henning
    posted to signaling review no in_vivo enos dysfunction disease cholesterol caveolin-1 caveolae cardiovascular calcium by tsjipko on 2008-07-21 10:31:42 as *****
  • Temperature cycling to improve the ethanol production with solid state simultaneous saccharification and fermentation
    Applied Biochemistry and Microbiology, Vol. 43, No. 1. (February 2007), pp. 57-60.
    by Chen, , Xu, , Li,
    posted to non-isothermal-ssf by johnsonw on 2008-07-21 08:01:53 as **
  • Mutation analysis of presenilin 1 gene in Alzheimer's disease
    The Lancet, Vol. 347, No. 8994. (13 January 1996), pp. 130-131.
    by K Boteva, M Vitek, H Mitsuda, Har de Silva, PT Xu, G Small, JR Gilbert
    posted to yod ps-1 genetics fad ad by applebyb on 2008-07-21 02:36:43 as read
  • A dynamic model for the allosteric mechanism of GroEL.
    J Mol Biol, Vol. 302, No. 2. (15 September 2000), pp. 303-313.
    by J Ma, PB Sigler, Z Xu, M Karplus
    posted to targeted_md md by LamBras on 2008-07-20 15:11:27 as **** along with 2 people lna dgront
  • Automatic image annotation by using concept-sensitive salient objects for image content representation
    (2004), pp. 361-368.
    by Jianping Fan, Yuli Gao, Hangzai Luo, Guangyou Xu
    posted to vision semantics generals annotation by iansimon on 2008-07-19 07:04:22 as **** along with 2 people and 1 group thsant Hoenikker video_retrieval
  • Separating Reflections from Images Using Kernel Independent Component Analysis
    Pattern Recognition, 2006. ICPR 2006. 18th International Conference on, Vol. 3 (2006), pp. 194-197.
    by M Yamazaki, Yen-Wei Chen, Gang Xu
    posted to no-tag by ganeshrnaik on 2008-07-19 06:33:57 as **
  • Non-rigid Image Registration Using Geometric Features and Local Salient Region Features
    Computer Vision and Pattern Recognition, 2006 IEEE Computer Society Conference on, Vol. 1 (2006), pp. 825-832.
    by Jinzhong Yang, RS Blum, JP Williams, Yiyong Sun, Chenyang Xu
    posted to registration by stsaft on 2008-07-18 22:49:26 as **
  • Computational tools for protein modeling.
    Curr Protein Pept Sci, Vol. 1, No. 1. (July 2000), pp. 1-21.
    by D Xu, Y Xu, EC Uberbacher
    posted to no-tag by granujilla on 2008-07-18 14:35:34 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Use case refactoring: a tool and a case study
    Software Engineering Conference, 2004. 11th Asia-Pacific (2004), pp. 484-491.
    by J Xu, W Yu, K Rui, G Butler
    posted to refactoring by alphabetagamma on 2008-07-18 14:09:29 as **
  • The Biermann Battery in Cosmological MHD Simulations of Population III Star Formation
    (18 Jul 2008)
    by Hao Xu, Brian W O'shea, David C Collins, Michael L Norman, Hui Li, Shengtai Li
    posted to simulation research enzo by 72Nova on 2008-07-18 08:17:46 as ***
  • PRIMEGENS-v2: Genome-wide primer design for analyzing DNA methylation patterns of CpG islands
    Bioinformatics (25 June 2008), btn320.
    by Gyan P Srivastava, Juyuan Guo, Huidong Shi, Dong Xu
    posted to primer methylation dna cpg by kjglennie on 2008-07-18 04:54:14 as ** along with 2 people jyuh natstreet
  • Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins.
    Journal of molecular biology (7 June 2008)
    by Qifang Xu, Adrian A A Canutescu, Guoli Wang, Maxim Shapovalov, Zoran Obradovic, Roland L L Dunbrack
    posted to ppi homo by kintoki on 2008-07-18 04:01:26 as ** along with 1 person chad_davis
  • A chemical approach to stem-cell biology and regenerative medicine
    Nature, Vol. 453, No. 7193. (14 May 2008), pp. 338-344.
    by Yue Xu, Yan Shi, Sheng Ding
    posted to cell_fate_switch review regen_med by ajaymalik on 2008-07-17 23:32:15 as **
  • Adaptation across the Cortical Hierarchy: Low-Level Curve Adaptation Affects High-Level Facial-Expression Judgments
    J. Neurosci., Vol. 28, No. 13. (26 March 2008), pp. 3374-3383.
    by Hong Xu, Peter Dayan, Richard M Lipkin, Ning Qian
    posted to wow adaptation by kristina to the group VisionLab on 2008-07-17 20:29:01 as ** along with 1 person bayesian
  • Genomics and genome-wide association studies: An integrative approach to expression QTL mapping
    Genomics, Vol. In Press, Corrected Proof
    by James H Degnan, Jessica Lasky-Su, Benjamin A Raby, Mousheng Xu, Cliona Molony, Eric E Schadt, Christoph Lange
    posted to gwa eqtl by jyuh on 2008-07-17 17:29:52 as ** along with 1 person natstreet
  • Extracting meaningful entities from police narrative reports
    (2002), pp. 1-5.
    by Michael Chau, Jennifer J Xu, Hsinchun Chen
    posted to text-mining text nlp neuralnetworks ner narrative crime by ianturton on 2008-07-17 16:59:32 as **
  • Link Privacy in Social Networks
    Data Engineering, 2008. ICDE 2008. IEEE 24th International Conference on (2008), pp. 1355-1357.
    by Aleksandra Korolova, Rajeev Motwani, Shubha U Nabar, Ying Xu
    posted to social-networks pvnets privacy by tnhh on 2008-07-17 16:14:25 as ** along with 2 people mpotamias gionis
  • The MCK mouse heart model of Friedreich's ataxia: Alterations in iron-regulated proteins and cardiac hypertrophy are limited by iron chelation.
    Proceedings of the National Academy of Sciences of the United States of America (9 July 2008)
    by Megan Whitnall, Yohan Suryo S Rahmanto, Robert Sutak, Xiangcong Xu, Erika M M Becker, Marc R R Mikhael, Prem Ponka, Des R R Richardson
    posted to heart frda by giovanni on 2008-07-17 16:09:49 as **
  • Laser intensity dependence of high-order harmonic generation from aligned CO[sub 2] molecules
    Physical Review A (Atomic, Molecular, and Optical Physics), Vol. 78, No. 1. (2008)
    by Peng Liu, Pengfei Yu, Zhinan Zeng, Hui Xiong, Xiaochun Ge, Ruxin Li, Zhizhan Xu
    posted to sfa molecules model intensity-dependence hhg co2 by mightmightys on 2008-07-17 13:10:33 as ***
  • Whole genome amplification using single-primer PCR.
    Biotechnology journal, Vol. 3, No. 3. (March 2008), pp. 378-382.
    by K Lao, NL Xu, NA Straus
    posted to wga pcr by jyuh on 2008-07-17 09:25:52 as **
  • Genomewide comparative phylogenetic and molecular evolutionary analysis of tubby-like protein family in Arabidopsis, rice, and poplar.
    Genomics (9 July 2008)
    by Zefeng Yang, Yong Zhou, Xuefeng Wang, Shiliang Gu, Jianmin Yu, Guohua Liang, Changjie Yan, Chenwu Xu
    posted to no-tag by natstreet on 2008-07-17 09:10:16 as **
  • Monte Carlo simulation of self-avoiding lattice chains subject to oscillatory shear flow in polymer solution
    Rheologica Acta, Vol. 40, No. 1. (January 2001), pp. 60-66.
    by Guoqiang Xu, Jiandong Ding, Yuliang Yang
    posted to shear bfm by gsub on 2008-07-16 21:27:33 as **
  • Monte Carlo simulation of self-avoiding lattice chains subject to simple shear flow Part II. Three-dimensional results and comparison with experiments
    Polymer, Vol. 41, No. 9. (April 2000), pp. 3289-3295.
    by Guoqiang Xu, Jiandong Ding, Yuliang Yang
    posted to shear bfm by gsub on 2008-07-16 21:25:14 as **
  • Monte Carlo simulation of self-avoiding lattice chains subject to simple shear flow. I. Model and simulation algorithm
    The Journal of Chemical Physics, Vol. 107, No. 10. (1997), pp. 4070-4084.
    by Guoqiang Xu, Jiandong Ding, Yuliang Yang
    posted to shear bfm by gsub on 2008-07-16 21:23:10 as **
  • Similar active genes cluster in specialized transcription factories
    J. Cell Biol., Vol. 181, No. 4. (19 May 2008), pp. 615-623.
    by Meng Xu, Peter R Cook
    posted to tba by ArtemPankin to the group Khavkin's lab on 2008-07-16 10:38:35 as **
  • A Balanced Tree-Based Strategy for Unstructured Media Distribution in P2P Networks
    Communications, 2008. ICC '08. IEEE International Conference on (2008), pp. 1797-1801.
    by C Xu, GM Muntean, E Fallon, A Hanley
    posted to vod tree streaming p2p data-assignment by babyone on 2008-07-16 09:11:19 as read
  • Photonic ultrawideband monocycle pulse generation using a single electro-optic modulator
    Opt. Lett., Vol. 33, No. 3. (1 February 2008), pp. 288-290.
    by Jianqiang Li, Songnian Fu, Kun Xu, Jian Wu, Jintong Lin, Ming Tang, P Shum
    posted to wideband ultrafast pulse physics by pak on 2008-07-15 16:22:11 as **
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