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Group: biomedical-nlp - library [452 articles]

Недавние статьи, отправленные по почте членами biomedical-nlp группы
  • Lonesome George : The Life and Loves of a Conservation Icon
    (04 April 2006)
    by Henry Nicholls
    posted to conservation by caporaso to the group biomedical-nlp on 2007-04-27 13:45:11 as ***** along with 3 people and 1 group dayjm cmm Fin FAB-lab
  • Bolstered Error Estimation
    by Ulisses B Neto, Edward Dougherty
    posted to machine-learning cross-validation by caporaso to the group biomedical-nlp on 2007-03-30 14:53:27 as *****
  • Prediction error estimation: a comparison of resampling methods
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3301-3307.
    by Annette M Molinaro, Richard Simon, Ruth M Pfeiffer
    posted to statistics machine-learning data-mining cross-validation by caporaso to the group biomedical-nlp on 2007-03-19 23:33:34 as ***** along with 1 person winterschlaefer
  • Genomic biodiversity, phylogenetics and coevolution in proteins.
    Appl Bioinformatics, Vol. 1, No. 2. (2002), pp. 81-92.
    by DD Pollock
    posted to coevolution by caporaso to the group biomedical-nlp on 2007-02-26 18:02:10 as ***** along with 1 person chrys
  • Mapping data elements to terminological resources for integrating biomedical data sources
    BMC Bioinformatics, Vol. 7, No. Suppl 3. (2006)
    by Fleur Mougin, Anita Burgun, Olivier Bodenreider
    posted to ontology by helliontroy to the group biomedical-nlp on 2006-12-14 21:13:38 as *****
  • MAFFT version 5: improvement in accuracy of multiple sequence alignment.
    Nucleic Acids Res, Vol. 33, No. 2. (2005), pp. 511-518.
    by K Katoh, K Kuma, H Toh, T Miyata
    posted to alignment sequence by caporaso to the group biomedical-nlp on 2006-12-08 08:45:07 as ***** along with 3 people urgi rabio timflutre
  • Chemical space and biology
    Nature, Vol. 432, No. 7019. (16 December 2004), pp. 824-828.
    by Christopher M Dobson
    posted to chemistry minor-proposal by caporaso to the group biomedical-nlp on 2006-12-07 01:08:17 as ***** along with 2 people and 2 groups kuhn marcius BioinfoCIPF SGU-CIPF
  • Filling preposition-based templates to capture information from medical abstracts.
    Pac Symp Biocomput (2002), pp. 350-361.
    by G Leroy, H Chen
    posted to relation-extraction by helliontroy to the group biomedical-nlp on 2006-12-06 21:45:53 as ***** along with 2 people and 1 group yas mircea T_lab
  • Methods for the prediction of protein-ligand binding sites for structure-based drug design and virtual ligand screening.
    Curr Protein Pept Sci, Vol. 7, No. 5. (October 2006), pp. 395-406.
    by AT Laurie, RM Jackson
    posted to drug-design minor-proposal by caporaso to the group biomedical-nlp on 2006-12-06 19:26:00 as *****
  • BioCreAtIvE task 1A: gene mention finding evaluation.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by A Yeh, A Morgan, M Colosimo, L Hirschman
    posted to biomedical nlp by caporaso to the group biomedical-nlp on 2006-12-04 05:35:49 as ***** along with 4 people and 1 group yas helliontroy zlu johnkork T_lab
  • Automatic labeling of semantic roles
    Comput. Linguist., Vol. 28, No. 3. (September 2002), pp. 245-288.
    by Daniel Gildea, Daniel Jurafsky
    posted to semantic-label by helliontroy to the group biomedical-nlp on 2006-11-28 00:34:48 as ***** along with 4 people lillejul aliku bhaddow rion
  • Zone analysis in biology articles as a basis for information extraction.
    Int J Med Inform (17 August 2005)
    by Yoko Mizuta, Anna Korhonen, Tony Mullen, Nigel Collier
    posted to fulltext-discourse by helliontroy to the group biomedical-nlp on 2006-11-28 00:23:58 as ***** along with 1 person and 1 group yas T_lab
  • Classifying Biological Full-Text Articles for Multi-Database Curation.
    (2006)
    by Wen J Hou, Chih Lee, Hsin H Chen
    posted to fulltext-use by helliontroy to the group biomedical-nlp on 2006-11-28 00:15:41 as *****
  • Measures of semantic similarity and relatedness in the biomedical domain
    Journal of Biomedical Informatics, Vol. In Press, Corrected Proof
    by Ted Pedersen, Serguei V Pakhomov, Siddharth Patwardhan, Christopher G Chute
    posted to no-tag by helliontroy to the group biomedical-nlp on 2006-11-27 23:46:58 as ***** along with 2 people and 2 groups ejmeij RockHI ilps LanguageModeling
  • Information extraction in molecular biology.
    Brief Bioinform, Vol. 3, No. 2. (June 2002), pp. 154-165.
    by C Blaschke, L Hirschman, A Valencia
    posted to fulltext-discourse by helliontroy to the group biomedical-nlp on 2006-11-17 18:20:24 as ***** along with 4 people and 2 groups irenas Enro kuhn yas dbk-lab T_lab
  • MUSCLE: a multiple sequence alignment method with reduced time and space complexity.
    BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004)
    by RC Edgar
    posted to compare comps evolution major-proposal sequence by caporaso to the group biomedical-nlp on 2006-11-13 20:28:08 as ***** along with 13 people and 2 groups Ema sanchezbuelna wallacei knaseanka chrn jwm balajis gbart sriram_s cdallett timflutre gisle urgi Radiation_Damage Stressosome
  • Residue coevolution: Modeling and interpretation
    (August 2006)
    by Zhengyuan Wang
    posted to coevolution compensatory comps major-proposal by caporaso to the group biomedical-nlp on 2006-11-11 00:44:42 as *****
  • Sarcomeric Proteins and Familial Hypertrophic Cardiomyopathy: Linking Mutations in Structural Proteins to Complex Cardiovascular Phenotypes
    Heart Failure Reviews, Vol. 10, No. 3. (September 2005), pp. 237-248.
    by Jil Tardiff
    posted to comps major-proposal myosin by caporaso to the group biomedical-nlp on 2006-11-11 00:39:35 as *****
  • Text mining and ontologies in biomedicine: making sense of raw text.
    Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 239-251.
    by I Spasic, S Ananiadou, J Mcnaught, A Kumar
    posted to ontology review by helliontroy to the group biomedical-nlp on 2006-11-10 23:01:08 as ***** along with 7 people and 2 groups yggdrasil irenas andytseng yas hpiwowar johnkork daniel_schober dbk-lab T_lab
  • Exploring a New Approach to the Alignment of Ontologies
    (2003)
    by I Cruz, A Rajendran
    posted to ontology-align by helliontroy to the group biomedical-nlp on 2006-11-09 20:12:55 as *****
  • Context dependence and coevolution among amino acid residues in proteins.
    Methods Enzymol, Vol. 395 (2005), pp. 779-790.
    by ZO Wang, DD Pollock
    posted to coevolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-11-08 15:08:49 as *****
  • Effectiveness of correlation analysis in identifying protein residues undergoing correlated evolution.
    Protein Eng, Vol. 10, No. 6. (June 1997), pp. 647-657.
    by DD Pollock, WR Taylor
    posted to coevolution compensatory major-proposal mutation by caporaso to the group biomedical-nlp on 2006-11-08 01:01:53 as ***** along with 1 person friendpine
  • The Role of Compensatory Mutations in the Emergence of Drug Resistance.
    PLoS Comput Biol, Vol. 2, No. 10. (13 October 2006)
    by Andreas Handel, Roland R R Regoes, Rustom Antia
    posted to compensatory major-proposal mutation by caporaso to the group biomedical-nlp on 2006-10-29 22:56:02 as ***** along with 1 person ramensky
  • Characterization of Compensated Mutations in Terms of Structural and Physico-Chemical Properties.
    J Mol Biol (26 September 2006)
    by Carles Ferrer-Costa, Modesto Orozco, Xavier de la D Cruz
    posted to compensatory major-proposal mutation by caporaso to the group biomedical-nlp on 2006-10-29 22:54:53 as ***** along with 3 people and 1 group ramensky cat_worth cjeans structural_bioinformatics
  • Correlated mutations contain information about protein-protein interaction
    J Mol Biol, Vol. 271, No. 4. (Aug 1997), pp. 511-523.
    by F Pazos, Helmer M Citterich, G Ausiello, A Valencia
    posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as *****
  • Coevolving protein residues: maximum likelihood identification and relationship to structure
    J Mol Biol, Vol. 287, No. 1. (Mar 1999), pp. 187-198.
    by DD Pollock, WR Taylor, N Goldman
    posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as *****
  • Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap
    Proc Natl Acad Sci U S A, Vol. 97, No. 7. (Mar 2000), pp. 3288-3291.
    by KR Wollenberg, WR Atchley
    posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as *****
  • Exploring a phylogenetic approach for the detection of correlated substitutions in proteins
    Mol Biol Evol, Vol. 17, No. 11. (Nov 2000), pp. 1753-1759.
    by P Tuff, P Darlu
    posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as *****
  • Correlated mutation analyses on very large sequence families
    Chembiochem, Vol. 3, No. 10. (Oct 2002), pp. 1010-1017.
    by L Oliveira, AC Paiva, G Vriend
    posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as *****
  • Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments
    Bioinformatics, Vol. 19, No. 6. (Apr 2003), pp. 750-755.
    by ER Tillier, TW Lui
    posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as *****
  • Using multiple sequence correlation analysis to characterize functionally important protein regions
    Protein Eng, Vol. 16, No. 6. (Jun 2003), pp. 397-406.
    by MC Saraf, GL Moore, CD Maranas
    posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as *****
  • Evaluating the predictability of conformational switching in RNA
    Bioinformatics, Vol. 20, No. 10. (Jul 2004), pp. 1573-1582.
    by B Voss, C Meyer, R Giegerich
    posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as *****
  • On evolutionary conservation of thermodynamic coupling in proteins
    J Biol Chem, Vol. 279, No. 18. (Apr 2004), pp. 19046-19050.
    by AA Fodor, RW Aldrich
    posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as *****
  • Influence of conservation on calculations of amino acid covariance in multiple sequence alignments
    Proteins, Vol. 56, No. 2. (Aug 2004), pp. 211-221.
    by AA Fodor, RW Aldrich
    posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:48 as *****
  • Coupled two-way clustering analysis of gene microarray data.
    Proc Natl Acad Sci U S A, Vol. 97, No. 22. (24 October 2000), pp. 12079-12084.
    by G Getz, E Levine, E Domany
    posted to clustering major-proposal by caporaso to the group biomedical-nlp on 2006-10-06 17:23:09 as ***** along with 3 people tvdbulck wnpx shikin
  • Structural interpretation of the mutations in the beta-cardiac myosin that have been implicated in familial hypertrophic cardiomyopathy
    Proc Natl Acad Sci U S A, Vol. 92, No. 9. (Apr 1995), pp. 3864-3868.
    by I Rayment, HM Holden, JR Sellers, L Fananapazir, ND Epstein
    posted to major-proposal mutation myosin protein by caporaso to the group biomedical-nlp on 2006-10-05 17:08:57 as *****
  • [Familial hypertrophic cardiomyopathy: genes, mutations and animal models. A review]
    Invest Clin, Vol. 45, No. 1. (Mar 2004), pp. 69-99.
    by CD Ramírez, R Padrón
    posted to major-proposal mutation myosin protein by caporaso to the group biomedical-nlp on 2006-10-05 17:08:57 as *****
  • One third of Danish hypertrophic cardiomyopathy patients with MYH7 mutations have mutations [corrected] in MYH7 rod region
    Eur J Hum Genet, Vol. 13, No. 2. (Feb 2005), pp. 161-165.
    by L Hougs, O Havndrup, H Bundgaard, L Kober, J Vuust, LA Larsen, M Christiansen, PS Andersen
    posted to major-proposal mutation myosin protein by caporaso to the group biomedical-nlp on 2006-10-05 17:08:57 as *****
  • Myopathies associated with myosin heavy chain mutations
    Acta Myol, Vol. 23, No. 2. (Sep 2004), pp. 90-96.
    by A Oldfors, H Tajsharghi, N Darin, C Lindberg
    posted to major-proposal mutation myosin protein by caporaso to the group biomedical-nlp on 2006-10-05 17:08:56 as *****
  • Horizontal gene transfer in prokaryotes: quantification and classification.
    Annu Rev Microbiol, Vol. 55 (2001), pp. 709-742.
    by EV Koonin, KS Makarova, L Aravind
    posted to major-proposal by caporaso to the group biomedical-nlp on 2006-09-30 01:54:28 as ***** along with 4 people and 3 groups ana jmeppley madhadron vwchan structural_bioinformatics Bioinformatics beta
  • Divergent Evolution Within Protein Superfolds Inferred from Profile-based Phylogenetics
    Journal of Molecular Biology, Vol. 354, No. 3. (2 December 2005), pp. 722-737.
    by Douglas L Theobald, Deborah S Wuttke
    posted to major-proposal by caporaso to the group biomedical-nlp on 2006-09-30 01:52:12 as ***** along with 3 people and 3 groups ana barry dlr McCammon structural_bioinformatics Bioinformatics
  • A gold standard set of mechanistically diverse enzyme superfamilies.
    Genome Biol, Vol. 7, No. 1. (2006)
    by SD Brown, JA Gerlt, JL Seffernick, PC Babbitt
    posted to major-proposal by caporaso to the group biomedical-nlp on 2006-09-30 01:42:02 as ***** along with 3 people kuhn robert JeremyZucker
  • Evolution of enzyme superfamilies
    Current Opinion in Chemical Biology, Vol. 10, No. 5. (October 2006), pp. 492-497.
    by Margaret E Glasner, John A Gerlt, Patricia C Babbitt
    posted to major-proposal by caporaso to the group biomedical-nlp on 2006-09-30 01:40:56 as ***** along with 4 people kuhn tny robert ucbcjbm
  • Divergence of function in the thioredoxin fold suprafamily: evidence for evolution of peroxiredoxins from a thioredoxin-like ancestor.
    Biochemistry, Vol. 43, No. 44. (9 November 2004), pp. 13981-13995.
    by SD Copley, WR Novak, PC Babbitt
    posted to major-proposal by caporaso to the group biomedical-nlp on 2006-09-30 01:38:41 as *****
  • Evolutionary information for specifying a protein fold
    Nature, Vol. 437, No. 7058., pp. 512-518.
    by Michael Socolich, Steve W Lockless, William P Russ, Heather Lee, Kevin H Gardner, Rama Ranganathan
    posted to major-proposal sca by caporaso to the group biomedical-nlp on 2006-09-29 23:11:51 as ***** along with 14 people and 4 groups ana barry lna bpb Einat balajis marcius gbart analogAI nirfriedman massivemayhem mingzhi bethbromley ca3295 structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Finding the fittest fold: using the evolutionary record to design new proteins.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 832-834.
    by RG Smock, LM Gierasch
    posted to major-proposal sca by caporaso to the group biomedical-nlp on 2006-09-29 23:11:06 as ***** along with 2 people and 2 groups marcius analogAI BioinfoCIPF SGU-CIPF
  • Natural-like function in artificial WW domains
    Nature, Vol. 437, No. 7058., pp. 579-583.
    by William P Russ, Drew M Lowery, Prashant Mishra, Michael B Yaffe, Rama Ranganathan
    posted to major-proposal sca by caporaso to the group biomedical-nlp on 2006-09-29 23:09:08 as ***** along with 6 people and 4 groups ana barry balajis marcius bethbromley ca3295 structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • 5' cleavage site in eukaryotic pre-mRNA splicing is determined by the overall 5' splice region, not by the conserved 5' GU.
    Cell, Vol. 50, No. 2. (17 July 1987), pp. 237-246.
    by M Aebi, H Hornig, C Weissmann
    posted to compensatory major-proposal mutation by caporaso to the group biomedical-nlp on 2006-09-29 00:56:39 as *****
  • A second-site mutation at phenylalanine-137 that increases catalytic efficiency in the mutant aspartate-27----serine Escherichia coli dihydrofolate reductase.
    Biochemistry, Vol. 29, No. 37. (18 September 1990), pp. 8561-8569.
    by EE Howell, C Booth, M Farnum, J Kraut, MS Warren
    posted to compensatory major-proposal mutation by caporaso to the group biomedical-nlp on 2006-09-29 00:55:39 as *****
  • Long-Range Structural Effects in a Second-Site Revertant of a Mutant Dihydrofolate Reductase
    PNAS, Vol. 90, No. 24. (15 December 1993), pp. 11753-11756.
    by Ka Brown, Ee Howell, J Kraut
    posted to structure mutation major-proposal compensatory bioi7712 by caporaso to the group biomedical-nlp on 2006-09-29 00:53:59 as *****
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