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Group: BioinfoCIPF - with tag algorithm [36 articles]

Недавние статьи, отправленные по почте членами BioinfoCIPF группы with tag algorithm
  • How to decide which are the most pertinent overly-represented features during gene set enrichment analysis
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Roland Barriot, David Sherman, Isabelle Dutour
  • Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer
    Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2273-2280.
    by Andreas Buness, Ruprecht Kuner, Markus Ruschhaupt, Annemarie Poustka, Holger Sultmann, Achim Tresch
  • Computation of significance scores of unweighted Gene Set Enrichment Analyses
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Andreas Keller, Christina Backes, Hans P Lenhof
  • Improving gene set analysis of microarray data by SAM-GS
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Irina Dinu, John Potter, Thomas Mueller, Qi Liu, Adeniyi Adewale, Gian Jhangri, Gunilla Einecke, Konrad Famulski, Philip Halloran, Yutaka Yasui
  • Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists
    BMC Bioinformatics, Vol. 8, No. Suppl 1. (2007)
    by Marco Masseroli, Elisa Bellistri, Andrea Franceschini, Francesco Pinciroli
    posted to webserver protein gene_list_analysis algorithm by ealloza to the group BioinfoCIPF on 2007-06-25 12:48:21 as read along with 1 person jyuh
  • Threshold-free high-power methods for the ontological analysis of genome-wide gene expression studies
    Genome Biology, Vol. 8 (08 May 2007), R74.
    by Bjorn Nilsson, Petra Hakansson, Mikael Johansson, Sven Nelander, Thoas Fioretos
  • GO-Mapper: functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2618-2625.
    by M Smid, LC Dorssers
    posted to algorithm expression functional_annotation gene_set_analysis microarray sage by ealloza to the group BioinfoCIPF on 2007-03-12 15:40:07 as read
  • GOAL: automated Gene Ontology analysis of expression profiles.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    posted to algorithm expression functional_annotation gene_set_analysis microarray sage by ealloza to the group BioinfoCIPF on 2007-03-12 15:38:46 as read
  • Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1129-1137.
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2007-03-12 15:36:36 as read
  • GenePattern 2.0
    Nature Genetics, Vol. 38, No. 5., pp. 500-501.
    by Michael Reich, Ted Liefeld, Joshua Gould, Jim Lerner, Pablo Tamayo, Jill P Mesirov
  • Discovering statistically significant pathways in expression profiling studies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549.
    by L Tian, SA Greenberg, SW Kong, J Altschuler, IS Kohane, PJ Park
  • Testing association of a pathway with survival using gene expression data.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1950-1957.
    posted to algorithm expression gene_set_analysis microarray survival by ealloza to the group BioinfoCIPF on 2007-03-12 14:46:06 as read
  • A global test for groups of genes: testing association with a clinical outcome.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 93-99.
  • Analyzing gene expression data in terms of gene sets: methodological issues.
    Bioinformatics (15 February 2007)
    by Jelle J J Goeman, Peter Bühlmann
  • Enrichment or depletion of a GO category within a class of genes: which test?
    Bioinformatics (20 December 2006)
    by Isabelle Rivals, Léon Personnaz, Lieng Taing, Marie-Claude C Potier
  • FUNC: a package for detecting significant associations between gene sets and ontological annotations
    BMC Bioinformatics, Vol. 8 (06 February 2007), 41.
    by Kay Prufer, Bjoern Muetzel, Hong-Hai Do, Gunter Weiss, Philipp Khaitovich, Erhard Rahm, Svante Paabo, Michael Lachmann, Wolfgang Enard
  • Statistical behavior of complex cancer karyotypes.
    Genes Chromosomes Cancer, Vol. 42, No. 4. (April 2005), pp. 327-341.
    posted to pathway human cancer algorithm aberration by ealloza to the group BioinfoCIPF on 2007-02-06 11:16:28 as read along with 1 person Garamonfok
  • Extensions to gene set enrichment
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 306-313.
    by Zhen Jiang, Robert Gentleman
  • Discovering tightly regulated and differentially expressed gene sets in whole genome expression data.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by C Ye, E Eskin
  • Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas
    BMC Bioinformatics, Vol. 7 (01 December 2006), 526.
    by Federico E Turkheimer, Federico Roncaroli, Benoit Hennuy, Christian Herens, Minh Nguyen, Didier Martin, Annick Evrard, Vincent Bours, Jacques Boniver, Manuel Deprez
  • A multivariate approach for integrating genome-wide expression data and biological knowledge
    Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2373-2380.
    by Sek W Kong, William T Pu, Peter J Park
    posted to algorithm expression gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-12-12 15:32:02 as read along with 2 people jfr aconesa
  • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1600-1607.
  • Pathway analysis using random forests classification and regression.
    Bioinformatics (29 June 2006)
    by Herbert Pang, Aiping Lin, Matthew Holford, Bradley E E Enerson, Bin Lu, Michael P P Lawton, Eugenia Floyd, Hongyu Zhao
  • Theme discovery from gene lists for identification and viewing of multiple functional groups.
    BMC Bioinformatics, Vol. 6 (2005)
    posted to algorithm functional_annotation gene_list_analysis by ealloza to the group BioinfoCIPF on 2006-08-24 12:43:38 as **
  • Global functional profiling of gene expression.
    Genomics, Vol. 81, No. 2. (February 2003), pp. 98-104.
  • Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1971-1978.
    by C Lottaz, R Spang
  • stam--a Bioconductor compliant R package for structured analysis of microarray data.
    BMC Bioinformatics, Vol. 6 (2005)
    by C Lottaz, R Spang
  • Study of coordinative gene expression at the biological process level
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3651-3657.
    by Tianwei Yu, Wei Sun, Shinsheng Yuan, Ker-Chau Li
  • Comparing functional annotation analyses with Catmap.
    BMC Bioinformatics, Vol. 5, No. 1. (9 December 2004)
    by T Breslin, P Edén, M Krogh
  • Pathway level analysis of gene expression using singular value decomposition.
    BMC Bioinformatics, Vol. 6 (2005)
    by J Tomfohr, J Lu, TB Kepler
  • Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics.
    Proc Natl Acad Sci U S A, Vol. 98, No. 3. (30 January 2001), pp. 1124-1129.
  • Significance analysis of functional categories in gene expression studies: a structured permutation approach
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1943-1949.
    by William T Barry, Andrew B Nobel, Fred A Wright
  • Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles.
    Bioinformatics, Vol. 22, No. 14. (July 2006), pp. e108-e116.
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-07-31 11:41:22 as read along with 721 people and 131 groups pchia Zephyrus songpku rwilliamson motchy rpbharti MariaChiaraP dconnelly maburkitt eisenmaj davidchavalarias 6rheology amydash dcastro boellernadja nafets sbaete steveut pathari alexispaz fghjorth tanneama000 ricckli iarmac laurabailey wolfe275 tkravitz pulsus-morbi Gaetan EsepBib jakobl ablam tbolt427 kungcc wartaalman austin Langster ezaydens Scis0000002 Axis jeanbean melody jsenn christiankissig psique scarcelan balicea danzinde gi0rgi0ne Stepstep abdulpur nlauzier mirweis christian_librarian skumagai nkishan squirmelia carterb Corbasson IanBrown malkav30 sarahmccrum gkvas freddan jago giolakat kndiaye gvandyk1 wongmld Neeperando duckysherwood yungyuc murb midshipman ranger vrich taenneken pdessus Repton nikko LTrottier mfloris hrwiltse scottkb ThomasKluge fernand0 dperkel egh jyuh samth sora 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  • PAGE: parametric analysis of gene set enrichment.
    BMC Bioinformatics, Vol. 6 (2005)
    by SY Kim, DJ Volsky
  • PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.
    Nat Genet, Vol. 34, No. 3. (July 2003), pp. 267-273.
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov