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Group: SGU-CIPF - library [622 articles]

Недавние статьи, отправленные по почте членами SGU-CIPF группы
  • Recent acceleration of human adaptive evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (December 2007), pp. 20753-20758.
    by John Hawks, Eric T Wang, Gregory M Cochran, Henry C Harpending, Robert K Moyzis
    posted to evolution human positive selection by marcius to the group SGU-CIPF on 2008-02-06 09:19:00 as **
  • Automated de novo prediction of native-like RNA tertiary structures
    PNAS (28 August 2007), 0703836104.
    by Rhiju Das, David Baker
    posted to structure_prediction rna ab-initio by marcius to the group SGU-CIPF on 2007-09-01 10:46:02 as ** along with 5 people and 1 group jwm eckart_bindewald zwang physics Ema BioinfoCIPF
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
    posted to ncrna genome classification by marcius to the group SGU-CIPF on 2007-06-15 11:16:53 as ** along with 11 people and 3 groups xingxu alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar EisenLab WetBiology BioinfoCIPF
  • RNA structure: experimental analysis.
    Curr Opin Microbiol (24 May 2007)
    by Brice Felden
    posted to structure rna review experimental by marcius to the group SGU-CIPF on 2007-06-12 12:56:46 as ** along with 3 people and 1 group penka emidio_capriotti debatebob BioinfoCIPF
  • RNA conformational classes.
    Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677.
    by B Schneider, Z Morávek, HM Berman
    posted to rotamers rna classification biophysics by marcius to the group SGU-CIPF on 2007-06-12 12:55:21 as ** along with 1 person and 1 group emidio_capriotti BioinfoCIPF
  • Evolutionary rates vary among rRNA structural elements
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354.
    by S Smit, J Widmann, R Knight
    posted to rna evolution by marcius to the group SGU-CIPF on 2007-06-12 12:54:21 as ** along with 5 people and 2 groups eckart_bindewald balicea penka i000 cjeans BioinfoCIPF YY1
  • RNAbor: a web server for RNA structural neighbors.
    Nucleic Acids Res (25 May 2007)
    by Eva Freyhult, Vincent Moulton, Peter Clote
    posted to server sequence-structure secondary_structure rna by marcius to the group SGU-CIPF on 2007-06-04 10:14:23 as ** along with 1 person and 1 group sebastien_vigneau BioinfoCIPF
  • The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
    Nucleic Acids Res (25 May 2007)
    by Sebastien Moretti, Fabrice Armougom, Iain M M Wallace, Desmond G G Higgins, Cornelius V V Jongeneel, Cedric Notredame
    posted to sequence_alignment sequence alignment algorithms by marcius to the group SGU-CIPF on 2007-06-04 10:12:59 as ** along with 2 people and 1 group sebastien_vigneau marti BioinfoCIPF
  • RNA Sampler: A new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
    Bioinformatics (30 May 2007)
    by Xing Xu, Yongmei Ji, Gary D D Stormo
    posted to structure_alignment rna by marcius to the group SGU-CIPF on 2007-06-04 10:11:38 as ** along with 1 person and 2 groups cjeans Bioinformatics BioinfoCIPF
  • On the relationship between sequence and structure similarities in proteomics
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 717-723.
    by K Evgeny
    posted to sequence-structure classification bioinformatics by marcius to the group SGU-CIPF on 2007-04-12 10:48:28 as ** along with 1 person and 1 group penka BioinfoCIPF
  • Deleterious SNP prediction: be mindful of your training data!
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 664-672.
    by Care, A Matthew, Needham, J Chris, Bulpitt, J Andrew, Westhead, R David
    posted to snp bioinformatics by marcius to the group SGU-CIPF on 2007-04-12 10:45:50 as ** along with 2 people and 1 group penka Yumyai BioinfoCIPF
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to clustering rna secondary_structure structure_alignment by marcius to the group SGU-CIPF on 2007-03-01 12:29:48 as ** along with 7 people and 1 group eckart_bindewald eweaver ppgardne ilh zwang dunnp zhouyu BioinfoCIPF
  • Key biology databases go wiki
    Nature, Vol. 445, No. 7129. (14 February 2007), pp. 691-691.
    by Jim Giles
    posted to opensourcebiology web20 by marcius to the group SGU-CIPF on 2007-02-15 17:39:08 as ** along with 9 people and 5 groups jyuh eweaver kehan raiyar grahamc leechuck PunkRock barriot mircea biodiversity_conservation Bioinformatics BioinfoCIPF steinmetzlab GrassBase
  • Modeling the Evolution of Protein Domain Architectures Using Maximum Parsimony
    Journal of Molecular Biology, Vol. 366, No. 1. (9 February 2007), pp. 307-315.
    by Jessica H Fong, Lewis Y Geer, Anna R Panchenko, Stephen H Bryant
    posted to protein_domains evolution bioinformatics algorithms by marcius to the group SGU-CIPF on 2007-01-25 08:31:09 as ** along with 5 people and 2 groups icases tny choonpeng redelings zwang BioinfoCIPF TNT
  • Structural proteomics: from the molecule to the system
    Nature Structural & Molecular Biology, Vol. 14, No. 1., pp. 3-4.
    by Lucia Banci, Wolfgang Baumeister, Josefina Enfedaque, Udo Heinemann, Gunter Schneider, Israel Silman, Joel L Sussman
    posted to meeting proteomics review structural_genomics structure views by marcius to the group SGU-CIPF on 2007-01-09 09:39:59 as ** along with 1 person and 1 group gerry BioinfoCIPF
  • A combinatorial approach to create artificial homing endonucleases cleaving chosen sequences
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. e149-e149.
    by J Smith, S Grizot, S Arnould, A Duclert, J Epinat, P Chames, J Prieto, P Redondo, F Blanco, J Bravo, G Montoya, F Paques, P Duchateau
    posted to bioengineering protein_design by marcius to the group SGU-CIPF on 2007-01-03 13:03:20 as ** along with 1 group BioinfoCIPF
  • Sequence comparison by sequence harmony identifies subtype-specific functional sites
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6540-6548.
    by W Pirovano, KA Feenstra, J Heringa
    posted to bioinformatics classification function protein sequence_alignment by marcius to the group SGU-CIPF on 2007-01-03 13:02:03 as ** along with 2 people and 1 group sriram_s marti BioinfoCIPF
  • The interaction networks of structured RNAs
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6587-6604.
    by A Lescoute, E Westhof
    posted to interaction rna secondary_structure by marcius to the group SGU-CIPF on 2007-01-03 13:00:44 as ** along with 4 people and 1 group jennifermbui jarasch debatebob ankur_iitg BioinfoCIPF
  • RNAs everywhere: genome-wide annotation of structured RNAs.
    J Exp Zoolog B Mol Dev Evol (14 December 2006)
    by Rolf Backofen, Stephan H H Bernhart, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L Hofacker, Kristin Missal, Axel Mosig, Sonja J J Prohaska, Dominic Rose, Peter F F Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will
    posted to classification review rna by marcius to the group SGU-CIPF on 2007-01-03 12:59:57 as ** along with 11 people and 4 groups jfr bala eckart_bindewald tardigrade andersbj penka cdawson ilh raylim jayster4 maralena microRNA BioinfoCIPF DictyosteliumGroup GIG
  • Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 127-128.
    by Letunic, P Bork
    posted to phylogeny server software by marcius to the group SGU-CIPF on 2007-01-03 12:55:33 as ** along with 4 people and 1 group jyuh skhadar hpaces gjuggler BioinfoCIPF
  • SCOR: a Structural Classification of RNA database.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 392-394.
    by PS Klosterman, M Tamura, SR Holbrook, SE Brenner
    posted to databases rna structure by marcius to the group SGU-CIPF on 2006-12-21 14:21:00 as ** along with 1 person and 1 group debatebob BioinfoCIPF
  • RNA structure: the long and the short of it.
    Curr Opin Struct Biol, Vol. 15, No. 3. (June 2005), pp. 302-308.
    by SR Holbrook
    posted to review rna structure by marcius to the group SGU-CIPF on 2006-11-29 12:55:28 as ** along with 2 people and 1 group eckart_bindewald debatebob BioinfoCIPF
  • Discovering disease-genes by topological features in human protein-protein interaction network
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2800-2805.
    by J Xu, Y Li
    posted to bioinformatics disease protein_interactions by marcius to the group SGU-CIPF on 2006-11-24 08:57:33 as ** along with 2 people and 1 group skhadar ealloza BioinfoCIPF
  • Synthetic biology--putting engineering into biology
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2790-2799.
    by Matthias Heinemann, Sven Panke
    posted to biology review synthetic_biology by marcius to the group SGU-CIPF on 2006-11-24 08:21:40 as ** along with 5 people and 1 group aalibes jtaylor Freecat fishtank karfunkel BioinfoCIPF
  • TimeTree: a public knowledge-base of divergence times among organisms
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2971-2972.
    by Hedges, S Blair, Dudley, Joel, Kumar, Sudhir
    posted to phylogeny by marcius to the group SGU-CIPF on 2006-11-23 14:51:07 as ** along with 1 group BioinfoCIPF
  • A protein interaction network for pluripotency of embryonic stem cells
    Nature
    by Jianlong Wang, Sridhar Rao, Jianlin Chu, Xiaohua Shen, Dana N Levasseur, Thorold W Theunissen, Stuart H Orkin
    posted to protein_interactions stem_cells systems_biology by marcius to the group SGU-CIPF on 2006-11-23 11:04:53 as ** along with 6 people and 1 group kentsis wnpx yeastyboy Ao_Li2007 iris_2001 tdmckee BioinfoCIPF
  • Variability and memory of protein levels in human cells
    Nature (19 November 2006)
    by Alex Sigal, Ron Milo, Ariel Cohen, Naama Geva-Zatorsky, Yael Klein, Yuvalal Liron, Nitzan Rosenfeld, Tamar Danon, Natalie Perzov, Uri Alon
    posted to classification protein systems_biology by marcius to the group SGU-CIPF on 2006-11-23 11:02:59 as ** along with 4 people and 2 groups icases jjray margaritis cjeans BioinfoCIPF TNT
  • An RNA folding algorithm including pseudoknots based on dynamic weighted matching.
    Comput Biol Chem, Vol. 30, No. 1. (February 2006), pp. 72-76.
    by H Liu, D Xu, J Shao, Y Wang
    posted to algorithms rna secondary_structure by marcius to the group SGU-CIPF on 2006-11-16 17:44:25 as ** along with 1 person and 1 group eckart_bindewald BioinfoCIPF
  • ProteinRNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2746-2752.
    by N Morozova, J Allers, Y Shamoo
    posted to bioinformatics protein_interactions rna algorithms by marcius to the group SGU-CIPF on 2006-11-16 09:29:09 as ** along with 1 group BioinfoCIPF
  • Mining frequent stem patterns from unaligned RNA sequences.
    Bioinformatics (14 August 2006)
    by Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai
    posted to bioinformatics rna secondary_structure by marcius to the group SGU-CIPF on 2006-11-01 14:13:15 as ** along with 5 people and 2 groups tardigrade andersbj samal dquest plofje microRNA BioinfoCIPF
  • Spatial localization of ligand binding sites from electron current density surfaces calculated from NMR chemical shift perturbations.
    J Am Chem Soc, Vol. 124, No. 39. (2 October 2002), pp. 11758-11763.
    by MA McCoy, DF Wyss
    posted to experimental nmr protein_complexes protein_interactions by marcius to the group SGU-CIPF on 2006-10-30 10:40:13 as ** along with 1 group BioinfoCIPF
  • Three-dimensional comparative modeling of RNA.
    Nucleic Acids Symp Ser, No. 36. (1997), pp. 69-71.
    by C Zwieb, F Müller
    posted to algorithms bioinformatics comparative_modeling rna by marcius to the group SGU-CIPF on 2006-10-27 21:31:25 as ** along with 1 group BioinfoCIPF
  • From The Cover: Global mapping of the protein structure space and application in structure-based inference of protein function
    PNAS, Vol. 102, No. 10. (8 March 2005), pp. 3651-3656.
    by Jingtong Hou, Se-Ran Jun, Chao Zhang, Sung-Hou Kim
    posted to algorithms bioinformatics clustering protein_structure by marcius to the group SGU-CIPF on 2006-10-26 08:42:48 as ** along with 1 person and 1 group tny BioinfoCIPF
  • Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
    Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. e112-e112.
    by D Chivian, D Baker
    posted to algorithms bioinformatics comparative_modeling sequence_alignment by marcius to the group SGU-CIPF on 2006-10-25 21:43:08 as ** along with 1 person and 1 group j3xucite BioinfoCIPF
  • RNA structures and folding: from conventional to new issues in structure predictions.
    Curr Opin Struct Biol, Vol. 7, No. 2. (April 1997), pp. 229-235.
    by P Schuster, PF Stadler, A Renner
    posted to prediction review rna structure by marcius to the group SGU-CIPF on 2006-10-23 17:16:19 as ** along with 1 person and 1 group emidio_capriotti BioinfoCIPF
  • Protein–Protein Interactions More Conserved within Species than across Species
    PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e79.
    by Sven Mika, Burkhard Rost
    posted to algorithms evolution protein_domains protein_interactions by marcius to the group SGU-CIPF on 2006-10-22 12:13:05 as ** along with 3 people and 1 group chad_davis skhadar dquest BioinfoCIPF
  • Structural Modeling of Protein Interactions by Analogy: Application to PSD-95
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 October 2006)
    by Dmitry Korkin, Fred P Davis, Frank Alber, Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B Kennedy, Andrej Sali
    posted to algorithms comparative_docking comparative_modeling protein_domains protein_interactions by marcius to the group SGU-CIPF on 2006-10-22 12:12:40 as ** along with 2 people and 1 group bicko chad_davis BioinfoCIPF
  • The Many Faces of Protein–Protein Interactions: A Compendium of Interface Geometry
    PLoS Computational Biology, Vol. 2, No. 9. (1 September 2006), e124.
    by Wan K Kim, Andreas Henschel, Christof Winter, Michael Schroeder
    posted to algorithms databases protein_domains protein_interactions by marcius to the group SGU-CIPF on 2006-10-22 12:12:00 as ** along with 5 people and 1 group wilbur bicko chad_davis choonpeng Evangelia BioinfoCIPF
  • Localization of protein-binding sites within families of proteins.
    Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360.
    by D Korkin, FP Davis, A Sali
    posted to bioinformatics comparative_docking protein_interactions by marcius to the group SGU-CIPF on 2006-10-22 12:11:09 as ** along with 5 people and 3 groups wilbur barry tjimenez bicko chad_davis structural_bioinformatics Bioinformatics BioinfoCIPF
  • NMR spectroscopy of RNA.
    Chembiochem, Vol. 4, No. 10. (6 October 2003), pp. 936-962.
    by B Fürtig, C Richter, J Wöhnert, H Schwalbe
    posted to nmr review rna by marcius to the group SGU-CIPF on 2006-10-22 12:10:22 as ** along with 1 group BioinfoCIPF
  • Mapping protein-protein interactions in solution by NMR spectroscopy.
    Biochemistry, Vol. 41, No. 1. (8 January 2002), pp. 1-7.
    by ER Zuiderweg
    posted to nmr protein_interactions review by marcius to the group SGU-CIPF on 2006-10-22 12:09:51 as ** along with 1 person and 1 group dgruiz BioinfoCIPF
  • Use of 19F NMR spectroscopy to screen chemical libraries for ligands that bind to proteins.
    Org Biomol Chem, Vol. 2, No. 5. (7 March 2004), pp. 725-731.
    by T Tengel, T Fex, H Emtenas, F Almqvist, I Sethson, J Kihlberg
    posted to ligand nmr protein_interactions by marcius to the group SGU-CIPF on 2006-10-22 12:09:26 as ** along with 1 group BioinfoCIPF
  • A multi-model approach to nucleic acid-based drug development.
    BioDrugs, Vol. 18, No. 1. (2004), pp. 37-50.
    by I Gautherot, R Sodoyer
    posted to discovery drug nmr rna by marcius to the group SGU-CIPF on 2006-10-22 12:09:02 as ** along with 1 group BioinfoCIPF
  • Studies of protein-ligand interactions by NMR.
    Biochem Soc Trans, Vol. 31, No. Pt 5. (October 2003), pp. 1006-1009.
    by J Clarkson, ID Campbell
    posted to nmr protein_interactions by marcius to the group SGU-CIPF on 2006-10-22 12:08:27 as ** along with 1 group BioinfoCIPF
  • Protein-protein interaction analysis by nuclear magnetic resonance spectroscopy.
    Methods Mol Biol, Vol. 261 (2004), pp. 79-92.
    by G Gao, JG Williams, SL Campbell
    posted to nmr protein_interactions by marcius to the group SGU-CIPF on 2006-10-22 12:08:07 as ** along with 1 group BioinfoCIPF
  • 1H MR spectroscopy of the brain: absolute quantification of metabolites.
    Radiology, Vol. 240, No. 2. (August 2006), pp. 318-332.
    by JF Jansen, WH Backes, K Nicolay, ME Kooi
    posted to metabolomics nmr by marcius to the group SGU-CIPF on 2006-10-22 12:07:24 as ** along with 1 group BioinfoCIPF
  • Virtual drug discovery and development for neglected diseases through public-private partnerships.
    Nat Rev Drug Discov, Vol. 2, No. 11. (November 2003), pp. 919-928.
    by S Nwaka, RG Ridley
    posted to discovery disease drug review views by marcius to the group SGU-CIPF on 2006-10-21 15:23:40 as ** along with 1 group BioinfoCIPF
  • Antimalarial drug discovery: efficacy models for compound screening.
    Nat Rev Drug Discov, Vol. 3, No. 6. (June 2004), pp. 509-520.
    by DA Fidock, PJ Rosenthal, SL Croft, R Brun, S Nwaka
    posted to discovery disease drug review views by marcius to the group SGU-CIPF on 2006-10-21 15:22:59 as ** along with 1 group BioinfoCIPF
  • Drug discovery and beyond: the role of public-private partnerships in improving access to new malaria medicines
    Transactions of the Royal Society of Tropical Medicine and Hygiene, Vol. 99, No. Supplement 1. (2005), pp. 20-29.
    by Solomon Nwaka
    posted to discovery disease drug review views by marcius to the group SGU-CIPF on 2006-10-21 15:22:06 as ** along with 1 person and 1 group cmmorel BioinfoCIPF
  • Evaluation of library ranking efficacy in virtual screening.
    J Comput Chem, Vol. 26, No. 1. (15 January 2005), pp. 11-22.
    by M Kontoyianni, GS Sokol, LM McClellan
    posted to algorithms docking drug ligand protein by marcius to the group SGU-CIPF on 2006-10-21 14:25:23 as ** along with 3 people and 1 group BragilMassoud nachtalp schuwi BioinfoCIPF
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