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Group: SGU-CIPF - with tag comparative_modeling [19 articles]

Недавние статьи, отправленные по почте членами SGU-CIPF группы with tag comparative_modeling
  • Three-dimensional comparative modeling of RNA.
    Nucleic Acids Symp Ser, No. 36. (1997), pp. 69-71.
    by C Zwieb, F Müller
    posted to algorithms bioinformatics comparative_modeling rna by marcius to the group SGU-CIPF on 2006-10-27 21:31:25 as ** along with 1 group BioinfoCIPF
  • Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
    Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. e112-e112.
    by D Chivian, D Baker
    posted to algorithms bioinformatics comparative_modeling sequence_alignment by marcius to the group SGU-CIPF on 2006-10-25 21:43:08 as ** along with 1 person and 1 group j3xucite BioinfoCIPF
  • Structural Modeling of Protein Interactions by Analogy: Application to PSD-95
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 October 2006)
    by Dmitry Korkin, Fred P Davis, Frank Alber, Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B Kennedy, Andrej Sali
    posted to algorithms comparative_docking comparative_modeling protein_domains protein_interactions by marcius to the group SGU-CIPF on 2006-10-22 12:12:40 as ** along with 1 person and 1 group bicko BioinfoCIPF
  • How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
    Journal of Molecular Biology, Vol. 136, No. 3. (25 January 1980), pp. 225-230.
    by Arthur M Lesk, Cyrus Chothia
    posted to biophysics comparative_modeling evolution protein_structure by marcius to the group SGU-CIPF on 2006-04-30 01:12:36 as ** along with 2 people and 3 groups ana barry structural_bioinformatics Bioinformatics BioinfoCIPF
  • Derivation of rules for comparative protein modeling from a database of protein structure alignments.
    Protein Sci, Vol. 3, No. 9. (September 1994), pp. 1582-1596.
    by A Sali, JP Overington
    posted to bioinformatics biophysics comparative_modeling structure_prediction by marcius to the group SGU-CIPF on 2006-04-08 07:26:12 as ** along with 2 people and 3 groups ana bicko structural_bioinformatics Bioinformatics BioinfoCIPF
  • All are not equal: A benchmark of different homology modeling programs
    Protein Sci, Vol. 14, No. 5. (1 May 2005), pp. 1315-1327.
    by Bjorn Wallner, Arne Elofsson
    posted to cafasp casp comparative_modeling by marcius to the group SGU-CIPF on 2006-03-02 03:40:24 as ** along with 6 people and 1 group cdeane karbak eweaver BioNica rsantana hmk BioinfoCIPF
  • Correlation between evolutionary structural development and protein folding.
    Proc Natl Acad Sci U S A, Vol. 102, No. 52. (27 December 2005), pp. 18950-18955.
    by C Nagao, TP Terada, T Yomo, M Sasai
    posted to biophysics comparative_modeling evolution protein_folding structure by marcius to the group SGU-CIPF on 2006-02-09 01:09:32 as ** along with 2 people and 1 group apaydin shuns BioinfoCIPF
  • Practical lessons from protein structure prediction.
    Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891.
    by K Ginalski, NV Grishin, A Godzik, L Rychlewski
    posted to cafasp casp comparative_modeling model_assessment structure_prediction by marcius to the group SGU-CIPF on 2005-12-22 06:53:06 as ** along with 7 people and 3 groups ana aalibes thaliana okarsligil duartemolha dgront mirzazadeh structural_bioinformatics Bioinformatics BioinfoCIPF
  • RNA 3D structure prediction: (1) assessing rna 3D structure similarity from 2D structure similarity.
    Genome Inform Ser Workshop Genome Inform, Vol. 15, No. 2. (2004), pp. 112-120.
    by JE Barreda D C, Y Shigenobu, E Ichiishi, CA Del Carpio M
    posted to casp comparative_modeling rna secondary_structure structure by marcius to the group SGU-CIPF on 2005-12-20 06:19:07 as ** along with 1 person and 1 group eckart_bindewald BioinfoCIPF
  • Progress in Modeling of Protein Structures and Interactions
    Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642.
    by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker
    posted to ab-initio bioinformatics biophysics cafasp comparative_modeling review structure_prediction by marcius to the group SGU-CIPF on 2005-10-28 00:14:41 as read along with 13 people and 2 groups thaliana jwm vavi bicko KyuhoLee eweaver tny nickolay dgront rsantana mirzazadeh insectopalo barry BioinfoCIPF structural_bioinformatics
  • Convergent evolution as a mechanism for pathogenic adaptation.
    Trends Microbiol (7 September 2005)
    by Sergey Sikora, Alex Strongin, Adam Godzik
    posted to comparative_modeling computational_biology evolution molecular_mimicry by marcius to the group SGU-CIPF on 2005-10-26 04:17:30 as ** along with 1 person and 3 groups ana structural_bioinformatics Bioinformatics BioinfoCIPF
  • Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.
    Proteins (26 September 2005)
    by Andrzej Koliński, Janusz M M Bujnicki
    posted to ab-initio bioinformatics comparative_modeling model_assessment structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 09:12:12 as *** along with 2 people and 1 group nigham dgront BioinfoCIPF
  • Assessment of predictions submitted for the CASP6 comparative modelling category.
    Proteins (26 September 2005)
    by Michael Tress, Iakes Ezkurdia, Osvaldo Graña, Gonzalo López, Alfonso Valencia
    posted to cafasp casp comparative_modeling protein_structure structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 08:59:31 as **** along with 3 people and 1 group nigham ffranca magia215 BioinfoCIPF
  • Prediction of novel and analogous folds using fragment assembly and fold recognition.
    Proteins (26 September 2005)
    by D T T Jones, K Bryson, A Coleman, L J J McGuffin, M I I Sadowski, J S S Sodhi, J J J Ward
    posted to cafasp casp comparative_modeling model_assessment protein_fragments protein_structure structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 08:57:29 as **** along with 1 group BioinfoCIPF
  • SPARKS 2 and SP(3) servers in CASP 6.
    Proteins (26 September 2005)
    by Hongyi Zhou, Yaoqi Zhou
    posted to cafasp casp comparative_modeling model_assessment protein_structure structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 08:56:27 as *** along with 1 person and 1 group j3xucite BioinfoCIPF
  • Evaluating the usefulness of protein structure models for molecular replacement.
    Bioinformatics, Vol. 21, No. suppl_2. (1 September 2005)
    by Alejandro Giorgetti, Domenico Raimondo, Adriana Erica E Miele, Anna Tramontano
    posted to comparative_modeling protein_structure by marcius to the group SGU-CIPF on 2005-10-22 08:54:54 as ** along with 1 person and 1 group ffranca BioinfoCIPF
  • Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation.
    Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351.
    by B Qian, AR Ortiz, D Baker
    posted to biophysics clustering comparative_modeling protein_structure structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 05:00:32 as **** along with 4 people and 3 groups ana barry lna dgront structural_bioinformatics Bioinformatics BioinfoCIPF
  • Protein structure comparison by alignment of distance matrices
    Journal of Molecular Biology, No. 223. (1993), pp. 123-128.
    by L Holm, C Sander
    posted to comparative_modeling protein_structure sequence_alignment by marcius to the group SGU-CIPF on 2005-10-22 03:09:40 as ** along with 1 group BioinfoCIPF
  • Comparative protein modelling by satisfaction of spatial restraints.
    J Mol Biol, Vol. 234, No. 3. (December 1993), pp. 779-815.
    by A Sali, TL Blundell
    posted to comparative_modeling by marcius to the group SGU-CIPF on 2005-10-22 02:57:26 as ** along with 1 group BioinfoCIPF
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