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A Stochastic Pi Calculus for Concurrent Objects

by: Céline Kuttler, Cédric Lhoussaine, Joachim Niehren
Algebraic Biology (2007), pp. 232-246.


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We present SpiCO, a new modeling and simulation language for systems biology. SpiCO is based on the stochastic π calculus. It supports higher level modeling via multi-profile concurrent objects with static inheritance. We present a semantics for SpiCO in terms of continuous time Markov chains, and show how to compile SpiCO back into the biochemical stochastic π calculus while preserving semantics.


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