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454 algorithm alignment application assembly binding binding-site-prediction binding-site-predictions bioinformatics c-myc chip chip-chip chip-on-chip chromatin cis-regulatory-elements comparison copy-number ctcf e-box factor functional_genomics genome-wide genomics high-throughput histone human_genome immunoprecipitation method microarray microrna network nucleosomes promoter regulation regulatory_networks review sequencing short-read software solexa statics stem_cell tfbs tfs tool toread transcription transcription_factor

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