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Group: BergmanLab - with tag mammals [30 articles]

Недавние статьи, отправленные по почте членами BergmanLab группы with tag mammals
  • A novel mode of enhancer evolution: The Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity.
    Genome research (7 August 2008)
    by Aileen M M Smith, Maria-Jose J Sanchez, George A A Follows, Sarah Kinston, Ian J J Donaldson, Anthony R R Green, Berthold Göttgens
    posted to transposon mammals cis-regulatory by cisevol to the group BergmanLab on 2008-08-11 19:50:59 as ** along with 1 group cis-regulatory-evolution
  • Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
    BMC Genomics, Vol. 9 (17 May 2008), 226.
    by Nalini Polavarapu, Leonardo Marino-Ramirez, David Landsman, John F Mcdonald, King I Jordan
    posted to transposon mammals cis-regulatory by cisevol to the group BergmanLab on 2008-05-29 22:08:58 as ** along with 2 people and 1 group bryankr pradiptaray cis-regulatory-evolution
  • Report of a chimeric origin of transposable elements in a bovine-coding gene.
    Genetics and molecular research : GMR, Vol. 7, No. 1. (2008), pp. 107-116.
    by LM Almeida, ME Amaral, IT Silva, WA Silva, PK Riggs, CM Carareto
    posted to transposon mammals by cisevol to the group BergmanLab on 2008-05-16 15:24:54 as **
  • Transcription of two human genes from a bidirectional endogenous retrovirus promoter.
    Gene (7 November 2005)
    by Catherine A A Dunn, Mark T T Romanish, Leanne E E Gutierrez, Louie N N van de Lagemaat, Dixie L L Mager
    posted to transposon mammals cis-regulatory by cisevol to the group BergmanLab on 2008-05-16 15:21:47 as ** along with 1 person and 3 groups dchughes cis-regulatory-evolution G4ID Genetics-of-Gambling
  • Possible involvement of SINEs in mammalian-specific brain formation.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 11. (18 March 2008), pp. 4220-4225.
    by T Sasaki, H Nishihara, M Hirakawa, K Fujimura, M Tanaka, N Kokubo, C Kimura-Yoshida, I Matsuo, K Sumiyama, N Saitou, T Shimogori, N Okada
    posted to transposon mammals cis-regulatory by cisevol to the group BergmanLab on 2008-04-26 19:38:10 as ** along with 1 person and 1 group FMoncini cis-regulatory-evolution
  • Overlapping genes in the human and mouse genomes
    BMC Genomics, Vol. 9 (14 April 2008), 169.
    by Chaitanya R Sanna, Wen-Hsiung Li, Liqing Zhang
    posted to mammals overlapping_gene by cisevol to the group BergmanLab on 2008-04-20 13:34:08 as **
  • Non-random retention of protein-coding overlapping genes in Metazoa
    BMC Genomics, Vol. 9 (16 April 2008), 174.
    by Giulia Solda', Mikita Suyama, Paride Pelucchi, Silvia Boi, Alessandro Guffanti, Ermanno Rizzi, Peer Bork, Maria L Tenchini, Francesca D Ciccarelli
    posted to mammals overlapping_gene by cisevol to the group BergmanLab on 2008-04-20 13:33:08 as ** along with 1 person maximilianh
  • Birth and death of gene overlaps in vertebrates
    BMC Evolutionary Biology, Vol. 7 (16 October 2007), 193.
    by Izabela Makalowska, Chiao-Feng Lin, Kristina Hernandez
    posted to mammals overlapping_gene transposon by cisevol to the group BergmanLab on 2008-04-16 13:01:04 as ** along with 1 person pradiptaray
  • At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription.
    J Virol, Vol. 80, No. 21. (November 2006), pp. 10752-10762.
    by A Buzdin, E Kovalskaya-Alexandrova, E Gogvadze, E Sverdlov
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-03-26 11:40:35 as ** along with 1 person yoanjacquemin
  • Exonization of the LTR transposable elements in human genome
    BMC Genomics, Vol. 8 (28 August 2007), 291.
    by Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John Mcdonald
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-03-25 22:07:43 as ** along with 3 people wenhan yoanjacquemin FMoncini
  • Great exaptations
    Journal of Biology, Vol. 7 (15 February 2008), 5.
    by Kathleen H Burns, Jef D Boeke
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-02-26 11:48:41 as **
  • Comparative expression analysis uncovers novel features of endogenous antisense transcription.
    Hum Mol Genet (18 February 2008)
    by Yuki Okada, Chiaki Tashiro, Koji Numata, Kazufumi Watanabe, Hajime Nakaoka, Naoyuki Yamamoto, Kazue Okubo, Rieko Ikeda, Rintaro Saito, Akio Kanai, Kuniya Abe, Masaru Tomita, Hidenori Kiyosawa
    posted to mammals overlapping_gene by cisevol to the group BergmanLab on 2008-02-20 21:33:15 as **
  • Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs).
    Genome Res, Vol. 17, No. 8. (August 2007), pp. 1139-1145.
    by M Krull, M Petrusma, W Makalowski, J Brosius, J Schmitz
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-02-20 11:30:01 as ** along with 2 people dchughes FMoncini
  • Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene
    BMC Molecular Biology, Vol. 8 (29 November 2007), 109.
    by Maayan Amit, Noa Sela, Hadas Keren, Ze'ev Melamed, Inna Muler, Noam Shomron, Shai Izraeli, Gil Ast
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-02-18 23:25:35 as ** along with 1 person bpcusack
  • Origin and evolution of human microRNAs from transposable elements.
    Genetics (15 April 2007)
    by Jittima Piriyapongsa, Leonardo Mariño-Ramírez, I King K Jordan
    posted to mammals mirna transposon by cisevol to the group BergmanLab on 2008-02-05 21:22:12 as ** along with 6 people and 4 groups gpappas tardigrade andersbj dchughes mtagaya emptyhb microRNA G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo.
    Proc Natl Acad Sci U S A (25 January 2008)
    by Angel Carlos C Roman, Dixan A A Benitez, Jose M M Carvajal-Gonzalez, Pedro M M Fernandez-Salguero
    posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-02-05 21:18:50 as ** along with 1 person and 1 group maximilianh cis-regulatory-evolution
  • Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1073-1078.
    by SJ Wheelan, Y Aizawa, JS Han, JD Boeke
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-02-05 21:08:47 as ** along with 1 person paulcartwright
  • Do Alu repeats shape the primate transcriptome?
    Genome Biology, Vol. 9, No. 2. (2008)
    by Araxi Urrutia, Leandro B Ocana, Laurence Hurst
    posted to cis-regulatory mammals microarray transposon by cisevol to the group BergmanLab on 2008-02-04 22:40:36 as ** along with 4 people and 1 group bpcusack dchughes djkt biomcgary cis-regulatory-evolution
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-01-20 22:36:40 as ** along with 6 people and 1 group gpappas balicea dchughes sebastien_vigneau timflutre yoanjacquemin cis-regulatory-evolution
  • Survey of Human Genes of Retroviral Origin: Identification and Transcriptome of the Genes with Coding Capacity for Complete Envelope Proteins
    J. Virol., Vol. 77, No. 19. (1 October 2003), pp. 10414-10422.
    by Nathalie de Parseval, Vladimir Lazar, Jean-Francois Casella, Laurence Benit, Thierry Heidmann
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-01-18 00:50:14 as ** along with 1 person yoanjacquemin
  • Which transposable elements are active in the human genome?
    Trends Genet, Vol. 23, No. 4. (April 2007), pp. 183-191.
    by RE Mills, EA Bennett, RC Iskow, SE Devine
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-01-18 00:48:52 as ** along with 4 people bpb gpappas N0131826 yoanjacquemin
  • Mobile DNA elements in primate and human evolution
    American Journal of Physical Anthropology, Vol. 134, No. S45. (2007), pp. 2-19.
    by Jinchuan Xing, David J Witherspoon, David A Ray, Mark A Batzer, Lynn B Jorde
    posted to mammals transposon by cisevol to the group BergmanLab on 2007-12-31 18:25:37 as ** along with 4 people pradiptaray timflutre ryanraaum urgi
  • Maintenance of transposon-free regions throughout vertebrate evolution
    BMC Genomics, Vol. 8 (20 December 2007), 470.
    by Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick
    posted to mammals noncoding transposon by cisevol to the group BergmanLab on 2007-12-22 13:26:58 as ** along with 2 people and 1 group blobbybirdman idonaldson cis-regulatory-evolution
  • Alu and LINE1 Distributions in the Human Chromosomes: Evidence of Global Genomic Organization Expressed in the Form of Power Laws
    Mol Biol Evol, Vol. 24, No. 11. (1 November 2007), pp. 2385-2399.
    by Diamantis Sellis, Astero Provata, Yannis Almirantis
    posted to mammals transposon by cisevol to the group BergmanLab on 2007-12-14 14:17:39 as ** along with 1 person dchughes
  • SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements
    BMC Genetics, Vol. 8 (06 November 2007), 78.
    by Britta Mersch, Noa Sela, Gil Ast, Sandor Suhai, Agnes Hotz-Wagenblatt
    posted to mammals transposon by cisevol to the group BergmanLab on 2007-11-25 22:54:11 as ** along with 1 person paulcartwright
  • Repeated Recruitment of LTR Retrotransposons as Promoters by the Anti-Apoptotic Locus NAIP during Mammalian Evolution
    PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e10.
    by Mark T Romanish, Wynne M Lock, Louie N de Lagemaat, Catherine A Dunn, Dixie L Mager
    posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2007-11-01 10:55:08 as ** along with 3 people and 3 groups dchughes Fei yoanjacquemin G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Exonization of active mouse L1s: a driver of transcriptome evolution?
    BMC Genomics, Vol. 8 (26 October 2007), 392.
    by Tomasz Zemojtel, Tobias Penzkofer, Jorg Schultz, Thomas Dandekar, Richard Badge, Martin Vingron
    posted to mammals transposon by cisevol to the group BergmanLab on 2007-10-26 22:17:39 as ** along with 2 people paulcartwright FMoncini
  • Ancient Exaptation of a CORE-SINE Retroposon into a Highly Conserved Mammalian Neuronal Enhancer of the Proopiomelanocortin Gene.
    PLoS Genet, Vol. 3, No. 10. (5 October 2007)
    by Andrea M M Santangelo, Flávio S J S de Souza, Lucía F F Franchini, Viviana F F Bumaschny, Malcolm J J Low, Marcelo Rubinstein
    posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2007-10-26 22:11:35 as ** along with 2 people and 1 group dchughes gpappas cis-regulatory-evolution
  • Housekeeping genes tend to show reduced upstream sequence conservation
    Genome Biology, Vol. 8 (13 July 2007), R140.
    by Domenec Farre, Nicolas Bellora, Loris Mularoni, Xavier Messeguer, Mar
    posted to cis-regulatory mammals noncoding by cisevol to the group BergmanLab on 2007-10-23 19:01:52 as ** along with 3 people and 2 groups djkt Garamonfok gjuggler Bioinformatics cis-regulatory-evolution
  • Transposable elements and the evolution of genome organization in mammals.
    Genetica, Vol. 86, No. 1-3. (1992), pp. 287-93.
    by HA Wichman, RA Van den Bussche, MJ Hamilton, RJ Baker
    posted to mammals transposon by paulcartwright to the group BergmanLab on 2007-10-22 12:35:26 as ** along with 1 person sebastien_vigneau
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