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Group: BergmanLab - with tag transposon [52 articles]

Недавние статьи, отправленные по почте членами BergmanLab группы with tag transposon
  • Transgenesis upgrades for Drosophila melanogaster
    Development, Vol. 134, No. 20. (15 October 2007), pp. 3571-3584.
    by Koen J Venken, Hugo J Bellen
    posted to transposon drosophila by cisevol to the group BergmanLab on 2008-07-03 13:58:43 as ** along with 1 person emmahe
  • Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
    BMC Genomics, Vol. 9 (17 May 2008), 226.
    by Nalini Polavarapu, Leonardo Marino-Ramirez, David Landsman, John F Mcdonald, King I Jordan
    posted to transposon mammals cis-regulatory by cisevol to the group BergmanLab on 2008-05-29 22:08:58 as ** along with 1 person and 1 group pradiptaray cis-regulatory-evolution
  • Report of a chimeric origin of transposable elements in a bovine-coding gene.
    Genetics and molecular research : GMR, Vol. 7, No. 1. (2008), pp. 107-116.
    by LM Almeida, ME Amaral, IT Silva, WA Silva, PK Riggs, CM Carareto
    posted to transposon mammals by cisevol to the group BergmanLab on 2008-05-16 15:24:54 as **
  • Transcription of two human genes from a bidirectional endogenous retrovirus promoter.
    Gene (7 November 2005)
    by Catherine A A Dunn, Mark T T Romanish, Leanne E E Gutierrez, Louie N N van de Lagemaat, Dixie L L Mager
    posted to transposon mammals cis-regulatory by cisevol to the group BergmanLab on 2008-05-16 15:21:47 as ** along with 1 person and 3 groups dchughes cis-regulatory-evolution G4ID Genetics-of-Gambling
  • Possible involvement of SINEs in mammalian-specific brain formation.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 11. (18 March 2008), pp. 4220-4225.
    by T Sasaki, H Nishihara, M Hirakawa, K Fujimura, M Tanaka, N Kokubo, C Kimura-Yoshida, I Matsuo, K Sumiyama, N Saitou, T Shimogori, N Okada
    posted to transposon mammals cis-regulatory by cisevol to the group BergmanLab on 2008-04-26 19:38:10 as ** along with 1 person and 1 group FMoncini cis-regulatory-evolution
  • Birth and death of gene overlaps in vertebrates
    BMC Evolutionary Biology, Vol. 7 (16 October 2007), 193.
    by Izabela Makalowska, Chiao-Feng Lin, Kristina Hernandez
    posted to mammals overlapping_gene transposon by cisevol to the group BergmanLab on 2008-04-16 13:01:04 as ** along with 1 person pradiptaray
  • Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns
    Genome Biology, Vol. 7 (20 December 2006), R120.
    by Manuela Sironi, Giorgia Menozzi, Giacomo P Comi, Matteo Cereda, Rachele Cagliani, Nereo Bresolin, Uberto Pozzoli
    posted to families fixation insertion intron mammal transposon by paulcartwright to the group BergmanLab on 2008-03-26 12:39:42 as read along with 2 people and 2 groups dchughes FMoncini G4ID Genetics-of-Gambling
  • Fixation of conserved sequences shapes human intron size and influences transposon-insertion dynamics.
    Trends Genet, Vol. 21, No. 9. (September 2005), pp. 484-488.
    by M Sironi, G Menozzi, GP Comi, N Bresolin, R Cagliani, U Pozzoli
    posted to human insertion intron transposon by paulcartwright to the group BergmanLab on 2008-03-26 12:30:56 as read along with 2 people dchughes FMoncini
  • The origin of recent introns: transposons?
    Genome Biol, Vol. 5, No. 12. (2004)
    by SW Roy
    posted to intron transposon by paulcartwright to the group BergmanLab on 2008-03-26 12:24:37 as read
  • Chimeric retrogenes suggest a role for the nucleolus in LINE amplification.
    FEBS Lett, Vol. 581, No. 16. (26 June 2007), pp. 2877-2882.
    by A Buzdin, E Gogvadze, MH Lebrun
    posted to chimera transposon by cisevol to the group BergmanLab on 2008-03-26 11:43:00 as **
  • At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription.
    J Virol, Vol. 80, No. 21. (November 2006), pp. 10752-10762.
    by A Buzdin, E Kovalskaya-Alexandrova, E Gogvadze, E Sverdlov
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-03-26 11:40:35 as ** along with 1 person yoanjacquemin
  • Exonization of the LTR transposable elements in human genome
    BMC Genomics, Vol. 8 (28 August 2007), 291.
    by Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John Mcdonald
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-03-25 22:07:43 as ** along with 3 people wenhan yoanjacquemin FMoncini
  • Characterization of new hAT transposable elements in 12 Drosophila genomes.
    Genetica (14 March 2008)
    by Mauro de Freitas Ortiz, Elgion L Loreto
    posted to flies transposon by cisevol to the group BergmanLab on 2008-03-15 19:59:35 as ** along with 1 person operon
  • Great exaptations
    Journal of Biology, Vol. 7 (15 February 2008), 5.
    by Kathleen H Burns, Jef D Boeke
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-02-26 11:48:41 as **
  • Transposable elements as tools for genomics and genetics in Drosophila
    Brief Funct Genomic Proteomic, Vol. 2, No. 1. (1 January 2003), pp. 57-71.
    by Edward Ryder, Steven Russell
    posted to drosophila p-element transposon by cisevol to the group BergmanLab on 2008-02-23 13:48:18 as ** along with 3 people pradiptaray RMGraze yulian2108
  • Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs).
    Genome Res, Vol. 17, No. 8. (August 2007), pp. 1139-1145.
    by M Krull, M Petrusma, W Makalowski, J Brosius, J Schmitz
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-02-20 11:30:01 as ** along with 2 people dchughes FMoncini
  • Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene
    BMC Molecular Biology, Vol. 8 (29 November 2007), 109.
    by Maayan Amit, Noa Sela, Hadas Keren, Ze'ev Melamed, Inna Muler, Noam Shomron, Shai Izraeli, Gil Ast
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-02-18 23:25:35 as **
  • TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by A Levy, N Sela, G Ast
    posted to transposon by cisevol to the group BergmanLab on 2008-02-18 15:18:17 as **
  • Transposable elements in Coffea (Gentianales: Rubiacea) transcripts and their role in the origin of protein diversity in flowering plants.
    Mol Genet Genomics (30 January 2008)
    by Fabrício R Lopes, Marcelo F Carazzolle, Gonçalo A Pereira, Carlos A Colombo, Claudia M Carareto
    posted to plants transposon by cisevol to the group BergmanLab on 2008-02-11 22:45:30 as ** along with 1 person natstreet
  • Origin and evolution of human microRNAs from transposable elements.
    Genetics (15 April 2007)
    by Jittima Piriyapongsa, Leonardo Mariño-Ramírez, I King K Jordan
    posted to mammals mirna transposon by cisevol to the group BergmanLab on 2008-02-05 21:22:12 as ** along with 6 people and 4 groups gpappas tardigrade andersbj dchughes mtagaya emptyhb microRNA G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes.
    Gene, Vol. 311 (5 June 2003), pp. 1-11.
    by JM Casacuberta, N Santiago
    posted to plants transposon by cisevol to the group BergmanLab on 2008-02-05 21:20:36 as ** along with 2 people gpappas saru
  • Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo.
    Proc Natl Acad Sci U S A (25 January 2008)
    by Angel Carlos C Roman, Dixan A A Benitez, Jose M M Carvajal-Gonzalez, Pedro M M Fernandez-Salguero
    posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-02-05 21:18:50 as ** along with 1 person and 1 group maximilianh cis-regulatory-evolution
  • Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1073-1078.
    by SJ Wheelan, Y Aizawa, JS Han, JD Boeke
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-02-05 21:08:47 as ** along with 1 person paulcartwright
  • Do Alu repeats shape the primate transcriptome?
    Genome Biology, Vol. 9, No. 2. (2008)
    by Araxi Urrutia, Leandro B Ocana, Laurence Hurst
    posted to cis-regulatory mammals microarray transposon by cisevol to the group BergmanLab on 2008-02-04 22:40:36 as ** along with 3 people and 1 group dchughes djkt biomcgary cis-regulatory-evolution
  • Evidence for recent horizontal transfer of gypsy-homologous LTR-retrotransposon gtwin into Drosophila erecta followed by its amplification with multiple aberrations.
    Gene, Vol. 396, No. 1. (1 July 2007), pp. 39-45.
    by AP Kotnova, IA Glukhov, NN Karpova, VB Salenko, NV Lyubomirskaya, YV Ilyin
    posted to drosophila transposon by cisevol to the group BergmanLab on 2008-01-29 23:53:50 as **
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-01-20 22:36:40 as ** along with 6 people and 1 group gpappas balicea dchughes sebastien_vigneau timflutre yoanjacquemin cis-regulatory-evolution
  • Survey of Human Genes of Retroviral Origin: Identification and Transcriptome of the Genes with Coding Capacity for Complete Envelope Proteins
    J. Virol., Vol. 77, No. 19. (1 October 2003), pp. 10414-10422.
    by Nathalie de Parseval, Vladimir Lazar, Jean-Francois Casella, Laurence Benit, Thierry Heidmann
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-01-18 00:50:14 as ** along with 1 person yoanjacquemin
  • Methods for estimating human endogenous retrovirus activities from EST databases.
    BMC Bioinformatics, Vol. 8 Suppl 2 (2007)
    by M Oja, J Peltonen, J Blomberg, S Kaski
    posted to est transposon by cisevol to the group BergmanLab on 2008-01-18 00:49:17 as ** along with 2 people Terkko yoanjacquemin
  • Which transposable elements are active in the human genome?
    Trends Genet, Vol. 23, No. 4. (April 2007), pp. 183-191.
    by RE Mills, EA Bennett, RC Iskow, SE Devine
    posted to mammals transposon by cisevol to the group BergmanLab on 2008-01-18 00:48:52 as ** along with 4 people bpb gpappas N0131826 yoanjacquemin
  • Mobile DNA elements in primate and human evolution
    American Journal of Physical Anthropology, Vol. 134, No. S45. (2007), pp. 2-19.
    by Jinchuan Xing, David J Witherspoon, David A Ray, Mark A Batzer, Lynn B Jorde
    posted to mammals transposon by cisevol to the group BergmanLab on 2007-12-31 18:25:37 as ** along with 4 people pradiptaray timflutre ryanraaum urgi
  • Maintenance of transposon-free regions throughout vertebrate evolution
    BMC Genomics, Vol. 8 (20 December 2007), 470.
    by Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick
    posted to mammals noncoding transposon by cisevol to the group BergmanLab on 2007-12-22 13:26:58 as ** along with 2 people and 1 group blobbybirdman idonaldson cis-regulatory-evolution
  • Alu and LINE1 Distributions in the Human Chromosomes: Evidence of Global Genomic Organization Expressed in the Form of Power Laws
    Mol Biol Evol, Vol. 24, No. 11. (1 November 2007), pp. 2385-2399.
    by Diamantis Sellis, Astero Provata, Yannis Almirantis
    posted to mammals transposon by cisevol to the group BergmanLab on 2007-12-14 14:17:39 as ** along with 1 person dchughes
  • Transcriptional cosuppression of yeast Ty1 retrotransposons.
    Genes Dev, Vol. 16, No. 4. (15 February 2002), pp. 467-478.
    by YW Jiang
    posted to fungi transposon by cisevol to the group BergmanLab on 2007-12-10 23:12:53 as **
  • 454 sequencing put to the test using the complex genome of barley
    BMC Genomics, Vol. 7 (26 October 2006), 275.
    by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J Close, Beat Keller, Nils Stein
    posted to 454 transposon by cisevol to the group BergmanLab on 2007-12-10 21:56:39 as ** along with 5 people and 2 groups jmeppley balicea ghattem azazello tpreeprem MBLAB gatech-compgenomics
  • Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey
    BMC Genomics, Vol. 8 (24 May 2007), 132.
    by Kankshita Swaminathan, Kranthi Varala, Matthew E Hudson
    posted to 454 transposon by cisevol to the group BergmanLab on 2007-12-10 20:17:23 as ** along with 3 people and 1 group ghattem GustavoLacerda tpreeprem gatech-compgenomics
  • HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
    Genome Res. (1 June 2007), gr.6286907.
    by Gary P Wang, Angela Ciuffi, Jeremy Leipzig, Charles C Berry, Frederic D Bushman
    posted to pyrosequencing transposon by cisevol to the group BergmanLab on 2007-12-07 13:39:27 as ** along with 2 people cberry epigenetics
  • Genome-wide changes in expression profile of murine endogenous retroviruses (MuERVs) in distant organs after burn injury
    BMC Genomics, Vol. 8 (28 November 2007), 440.
    by Young-Kwan Lee, Alex Chew, Lauren Fitzsimon, Rita Thomas, David Greenhalgh, Kiho Cho
    posted to cis-regulatory transposon by cisevol to the group BergmanLab on 2007-12-03 11:16:30 as **
  • Evaluating the protein coding potential of exonized transposable element sequences
    Biology Direct, Vol. 2 (26 November 2007), 31.
    by Jittima Piriyapongsa, Mark T Rutledge, Sanil Patel, Mark Borodovsky, King I Jordan
    posted to transposon by cisevol to the group BergmanLab on 2007-12-02 23:42:47 as ** along with 1 person wenhan
  • A transposable element inserted just 5' to a Drosophila glue protein gene alters gene expression and chromatin structure.
    Cell, Vol. 34, No. 1. (August 1983), pp. 75-84.
    by W McGinnis, AW Shermoen, SK Beckendorf
    posted to cis-regulatory flies transposon by cisevol to the group BergmanLab on 2007-12-01 16:48:38 as ** along with 1 group cis-regulatory-evolution
  • Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
    BMC Genomics, Vol. 8 (21 November 2007), 427.
    by Jiri Macas, Pavel Neumann, Alice Navratilova
    posted to 454 transposon by cisevol to the group BergmanLab on 2007-11-26 17:08:31 as **
  • SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements
    BMC Genetics, Vol. 8 (06 November 2007), 78.
    by Britta Mersch, Noa Sela, Gil Ast, Sandor Suhai, Agnes Hotz-Wagenblatt
    posted to mammals transposon by cisevol to the group BergmanLab on 2007-11-25 22:54:11 as ** along with 1 person paulcartwright
  • The DNA transposon Minos as a tool for transgenesis and functional genomic analysis in vertebrates and invertebrates
    Genome Biology, Vol. 8, No. Suppl 1. (2007)
    by Anastasios Pavlopoulos, Stefan Oehler, Maria Kapetanaki, Charalambos Savakis
    posted to transposon by cisevol to the group BergmanLab on 2007-11-01 12:05:22 as **
  • Predicting preferential DNA vector insertion sites: implications for functional genomics and gene therapy
    Genome Biology, Vol. 8, No. Suppl 1. (2007)
    by Christopher Hackett, Aron Geurts, Perry Hackett
    posted to transposon by cisevol to the group BergmanLab on 2007-11-01 12:02:51 as **
  • Repeated Recruitment of LTR Retrotransposons as Promoters by the Anti-Apoptotic Locus NAIP during Mammalian Evolution
    PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e10.
    by Mark T Romanish, Wynne M Lock, Louie N de Lagemaat, Catherine A Dunn, Dixie L Mager
    posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2007-11-01 10:55:08 as ** along with 3 people and 3 groups dchughes Fei yoanjacquemin G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Exonization of active mouse L1s: a driver of transcriptome evolution?
    BMC Genomics, Vol. 8 (26 October 2007), 392.
    by Tomasz Zemojtel, Tobias Penzkofer, Jorg Schultz, Thomas Dandekar, Richard Badge, Martin Vingron
    posted to mammals transposon by cisevol to the group BergmanLab on 2007-10-26 22:17:39 as ** along with 2 people paulcartwright FMoncini
  • Ancient Exaptation of a CORE-SINE Retroposon into a Highly Conserved Mammalian Neuronal Enhancer of the Proopiomelanocortin Gene.
    PLoS Genet, Vol. 3, No. 10. (5 October 2007)
    by Andrea M M Santangelo, Flávio S J S de Souza, Lucía F F Franchini, Viviana F F Bumaschny, Malcolm J J Low, Marcelo Rubinstein
    posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2007-10-26 22:11:35 as ** along with 1 person and 1 group gpappas cis-regulatory-evolution
  • Remarkable site specificity of local transposition into the Hsp70 promoter of Drosophila melanogaster.
    Genetics, Vol. 173, No. 2. (June 2006), pp. 809-820.
    by VY Shilova, DG Garbuz, EN Myasyankina, B Chen, MB Evgen'ev, ME Feder, OG Zatsepina
    posted to cis-regulatory flies transposon by cisevol to the group BergmanLab on 2007-10-25 11:56:50 as ** along with 1 person and 1 group pradiptaray cis-regulatory-evolution
  • Transposable elements and the evolution of genome organization in mammals.
    Genetica, Vol. 86, No. 1-3. (1992), pp. 287-93.
    by HA Wichman, RA Van den Bussche, MJ Hamilton, RJ Baker
    posted to mammals transposon by paulcartwright to the group BergmanLab on 2007-10-22 12:35:26 as ** along with 1 person sebastien_vigneau
  • Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Joti Giordano, Yongchao Ge, Yevgeniy Gelfand, György Abrusán, Gary Benson, Peter E E Warburton
    posted to defragmentation human transposon by paulcartwright to the group BergmanLab on 2007-10-22 12:27:39 as ** along with 6 people and 2 groups PetrovLab aprasad dchughes sebastien_vigneau N0131826 yoanjacquemin G4ID Genetics-of-Gambling
  • Heat-Shock Promoters: Targets for Evolution by P Transposable Elements in Drosophila.
    PLoS Genet, Vol. 2, No. 10. (6 October 2006)
    by Jean-Claude C Walser, Bing Chen, Martin E E Feder
    posted to cis-regulatory flies p-element transposon by cisevol to the group BergmanLab on 2007-10-21 18:52:05 as ** along with 1 person and 2 groups dpollard EisenLab cis-regulatory-evolution
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