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Group: Bioinformatics - library [3487 articles]

Недавние статьи, отправленные по почте членами Bioinformatics группы
  • VisANT: an integrative framework for networks in systems biology
    Brief Bioinform (7 May 2008), bbn020.
    by Zhenjun Hu, Evan S Snitkin, Charles Delisi
  • Molecular Dynamic Simulations of Cisplatin- and Oxaliplatin-d(GG) Intrastand Cross-links Reveal Differences in their Conformational Dynamics.
    J Mol Biol (23 August 2007)
    by Shantanu Sharma, Peng Gong, Brenda Temple, Debadeep Bhattacharyya, Nikolay V V Dokholyan, Stephen G G Chaney
  • Signal Propagation in Proteins and Relation to Equilibrium Fluctuations
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e172.
    by Chakra Chennubhotla, Ivet Bahar
  • Detection of DNA copy number alterations in cancer by array comparative genomic hybridization.
    Genet Med, Vol. 9, No. 9. (September 2007), pp. 574-584.
    posted to cnv by sleepingcell to the group Bioinformatics on 2007-09-19 04:02:58 as ***** along with 2 people frohike hpaces
  • Mutational and selective effects on copy-number variants in the human genome.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by GM Cooper, DA Nickerson, EE Eichler
    posted to cnv by sleepingcell to the group Bioinformatics on 2007-09-07 06:40:45 as ***** along with 2 people mrkrause rdiaz
  • Copy-number variation and association studies of human disease.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    posted to cnv by sleepingcell to the group Bioinformatics on 2007-09-07 06:38:39 as ***** along with 5 people jasonflannick jyuh mrkrause balicea rdiaz
  • Challenges and standards in integrating surveys of structural variation.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by SW Scherer, C Lee, E Birney, DM Altshuler, EE Eichler, NP Carter, ME Hurles, L Feuk
    posted to cnv by sleepingcell to the group Bioinformatics on 2007-09-07 06:34:30 as ***** along with 5 people jasonflannick jyuh bpb rdiaz jlangdon
  • Methods and strategies for analyzing copy number variation using DNA microarrays.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by NP Carter
    posted to cnv by sleepingcell to the group Bioinformatics on 2007-09-07 06:32:50 as ***** along with 4 people jyuh jfr mrkrause rdiaz
  • Association of putative concave protein-binding sites with the fluctuation behavior of residues.
    Protein Sci, Vol. 15, No. 10. (October 2006), pp. 2265-2277.
  • Current progress in bioinformatics 2007.
    Brief Bioinform (27 August 2007)
    by Russ B B Altman
    posted to bioinformatics by sleepingcell to the group Bioinformatics on 2007-08-30 09:48:20 as ***** along with 1 person grahamc
  • Assessing the Significance of Conserved Genomic Aberrations Using High Resolution Genomic Microarrays
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e143.
    by Mitchell Guttman, Carolyn Mies, Katarzyna Dudycz-Sulicz, Sharon J Diskin, Don A Baldwin, Christian J Stoeckert, Gregory R Grant
    posted to cnv by sleepingcell to the group Bioinformatics on 2007-08-30 09:47:49 as ***** along with 4 people and 1 group jfr rdiaz ealloza zwang BioinfoCIPF
  • Sensitive and Specific Real-Time Polymerase Chain Reaction Assays to Accurately Determine Copy Number Variations (CNVs) of Human Complement C4A, C4B, C4-Long, C4-Short, and RCCX Modules: Elucidation of C4 CNVs in 50 Consanguineous Subjects with Defined HLA Genotypes.
    J Immunol, Vol. 179, No. 5. (1 September 2007), pp. 3012-3025.
    by Yee Ling L Wu, Stephanie L L Savelli, Yan Yang, Bi Zhou, Brad H H Rovin, Daniel J J Birmingham, Haikady N N Nagaraja, Lee A A Hebert, C Yung Y Yu
    posted to cnv by sleepingcell to the group Bioinformatics on 2007-08-23 08:16:52 as *****
  • The Scientific Research Potential of Virtual Worlds
    Science, Vol. 317, No. 5837. (27 July 2007), pp. 472-476.
    by William S Bainbridge
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
  • Protein folding: Then and now.
    Arch Biochem Biophys (8 June 2007)
    by Yiwen Chen, Feng Ding, Huifen Nie, Adrian W W Serohijos, Shantanu Sharma, Kyle C C Wilcox, Shuangye Yin, Nikolay V V Dokholyan
  • Opposing activities protect against age-onset proteotoxicity.
    Science, Vol. 313, No. 5793. (15 September 2006), pp. 1604-1610.
  • PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny.
    PLoS Comput Biol, Vol. 1, No. 7. (December 2005)
  • Applied bioinformatics for the identification of regulatory elements.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287.
  • Practical Strategies for Discovering Regulatory DNA Sequence Motifs
    PLoS Computational Biology, Vol. 2, No. 4. (1 April 2006), e36.
    by Kenzie D Macisaac, Ernest Fraenkel
  • Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans
    Nature, Vol. 424, No. 6946. (17 July 2003), pp. 277-283.
    by Coleen T Murphy, Steven A Mccarroll, Cornelia I Bargmann, Andrew Fraser, Ravi S Kamath, Julie Ahringer, Hao Li, Cynthia Kenyon
    posted to new by ana to the group Bioinformatics on 2007-06-02 03:04:32 as ***** along with 1 person and 1 group johncumbers structural_bioinformatics
  • SISYPHUS--structural alignments for proteins with non-trivial relationships.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by A Andreeva, A Prlić, TJ Hubbard, AG Murzin
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart D De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James J Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques v van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
  • The path of DNA in the kinetochore.
    Curr Biol, Vol. 16, No. 8. (18 April 2006)
    by K Bloom, S Sharma, NV Dokholyan
  • iFold: a platform for interactive folding simulations of proteins.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2693-2694.
    by S Sharma, F Ding, H Nie, D Watson, A Unnithan, J Lopp, D Pozefsky, NV Dokholyan
  • Multiscale Modeling of Nucleosome Dynamics
    Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1457-1470.
    by Shantanu Sharma, Feng Ding, Nikolay V Dokholyan
  • Structural and Chemical Profiling of the Human Cytosolic Sulfotransferases
    PLoS Biology, Vol. 5, No. 5. (1 May 2007), e97.
    by Abdellah Allali-Hassani, Patricia W Pan, Ludmila Dombrovski, Rafael Najmanovich, Wolfram Tempel, Aiping Dong, Peter Loppnau, Fernando Martin, Janet Thonton, Aled M Edwards, Alexey Bochkarev, Alexander N Plotnikov, Masoud Vedadi, Cheryl H Arrowsmith
  • Definitions of enzyme function for the structural genomics era.
    Curr Opin Chem Biol, Vol. 7, No. 2. (April 2003), pp. 230-237.
    by PC Babbitt
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
  • Molecular analysis of Neanderthal DNA from the northern Caucasus.
    Nature, Vol. 404, No. 6777. (30 March 2000), pp. 490-493.
    posted to neanderthal by kaspermunch to the group Bioinformatics on 2007-02-27 20:55:24 as ***** along with 1 person ryanraaum
  • A view of Neandertal genetic diversity.
    Nat Genet, Vol. 26, No. 2. (October 2000), pp. 144-146.
    posted to neanderthal by kaspermunch to the group Bioinformatics on 2007-02-27 20:52:37 as ***** along with 1 person Archaeogenetics
  • DNA sequence of the mitochondrial hypervariable region II from the neandertal type specimen.
    Proc Natl Acad Sci U S A, Vol. 96, No. 10. (11 May 1999), pp. 5581-5585.
    posted to neanderthal by kaspermunch to the group Bioinformatics on 2007-02-27 20:51:27 as ***** along with 2 people Archaeogenetics Mochimasa
  • Neandertal DNA sequences and the origin of modern humans.
    Cell, Vol. 90, No. 1. (11 July 1997), pp. 19-30.
    posted to neanderthal by kaspermunch to the group Bioinformatics on 2007-02-27 20:50:18 as *****
  • Phylogenies from molecular sequences: inference and reliability.
    Annu Rev Genet, Vol. 22 (1988), pp. 521-565.
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:45:41 as *****
  • Evolutionary trees from DNA sequences: a maximum likelihood approach.
    J Mol Evol, Vol. 17, No. 6. (1981), pp. 368-376.
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:43:58 as ***** along with 7 people bpb chrn dquest djkt timflutre dmc elfar
  • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data.
    Genetics, Vol. 161, No. 3. (July 2002), pp. 1307-1320.
    by AJ Drummond, GK Nicholls, AG Rodrigo, W Solomon
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:40:52 as ***** along with 1 person AaronDarling
  • Genomic sequencing of Pleistocene cave bears.
    Science, Vol. 309, No. 5734. (22 July 2005), pp. 597-599.
    by JP Noonan, M Hofreiter, D Smith, JR Priest, N Rohland, G Rabeder, J Krause, JC Detter, S Pääbo, EM Rubin
    posted to ancient dna by kaspermunch to the group Bioinformatics on 2007-02-27 20:38:38 as ***** along with 1 person joshuashen
  • Nuclear gene sequences from a late pleistocene sloth coprolite.
    Curr Biol, Vol. 13, No. 13. (1 July 2003), pp. 1150-1152.
    by H Poinar, M Kuch, G Mcdonald, P Martin, S Pääbo
    posted to ancient dna by kaspermunch to the group Bioinformatics on 2007-02-27 20:36:43 as *****
  • Evolution, systematics, and phylogeography of pleistocene horses in the new world: a molecular perspective.
    PLoS Biol, Vol. 3, No. 8. (August 2005)
    by J Weinstock, E Willerslev, A Sher, W Tong, SY Ho, D Rubenstein, J Storer, J Burns, L Martin, C Bravi, A Prieto, D Froese, E Scott, L Xulong, A Cooper
    posted to ancient dna genetics population by kaspermunch to the group Bioinformatics on 2007-02-27 20:33:17 as *****
  • Rise and fall of the Beringian steppe bison.
    Science, Vol. 306, No. 5701. (26 November 2004), pp. 1561-1565.
    by B Shapiro, AJ Drummond, A Rambaut, MC Wilson, PE Matheus, AV Sher, OG Pybus, MT Gilbert, I Barnes, J Binladen, E Willerslev, AJ Hansen, GF Baryshnikov, JA Burns, S Davydov, JC Driver, DG Froese, CR Harington, G Keddie, P Kosintsev, ML Kunz, LD Martin, RO Stephenson, J Storer, R Tedford, S Zimov, A Cooper
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:30:35 as *****
  • Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis.
    Genetics, Vol. 167, No. 2. (June 2004), pp. 747-760.
    by J Hey, R Nielsen
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:25:06 as ***** along with 1 person AaronDarling
  • Distinguishing migration from isolation: a Markov chain Monte Carlo approach.
    Genetics, Vol. 158, No. 2. (June 2001), pp. 885-896.
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:23:44 as *****
  • Line-of-descent and genealogical processes, and their applications in population genetics models.
    Theor Popul Biol, Vol. 26, No. 2. (October 1984), pp. 119-164.
    by S Tavaré
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:22:12 as *****
  • Properties of a neutral allele model with intragenic recombination.
    Theor Popul Biol, Vol. 23, No. 2. (April 1983), pp. 183-201.
    by RR Hudson
    posted to populaton by kaspermunch to the group Bioinformatics on 2007-02-27 20:16:46 as *****
  • Genealogical inference from microsatellite data.
    Genetics, Vol. 150, No. 1. (September 1998), pp. 499-510.
    by IJ Wilson, DJ Balding
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:14:33 as *****
  • Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model.
    Theor Popul Biol, Vol. 53, No. 2. (April 1998), pp. 143-151.
    by R Nielsen
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:13:22 as *****
  • Estimating ancestral population parameters.
    Genetics, Vol. 145, No. 3. (March 1997), pp. 847-855.
    by J Wakeley, J Hey
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:11:53 as ***** along with 2 people djkt ryanraaum
  • The coalescent process with selfing.
    Genetics, Vol. 146, No. 3. (July 1997), pp. 1185-1195.
    posted to coalescent by kaspermunch to the group Bioinformatics on 2007-02-27 20:11:00 as *****
  • Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling.
    Genetics, Vol. 140, No. 4. (August 1995), pp. 1421-1430.
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:09:19 as *****
  • Sampling theory for neutral alleles in a varying environment.
    Philos Trans R Soc Lond B Biol Sci, Vol. 344, No. 1310. (29 June 1994), pp. 403-410.
    posted to coalescent by kaspermunch to the group Bioinformatics on 2007-02-27 20:07:50 as *****
  • Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates.
    Genet Res, Vol. 59, No. 2. (April 1992), pp. 139-147.
    posted to population by kaspermunch to the group Bioinformatics on 2007-02-27 20:06:17 as *****
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