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Group: Bioinformatics - with tag evolution [88 articles]

Недавние статьи, отправленные по почте членами Bioinformatics группы with tag evolution
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
  • Quantification of ortholog losses in insects and vertebrates.
    Genome Biology, Vol. 8 (16 November 2007), R242.
    by Stefan Wyder, Evgenia V Kriventseva, Reinhard Schroder, Tatsuhiko Kadowaki, Evgeny M Zdobnov
  • Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e181.
    by Can Alkan, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, Cenk S Sahinalp, Evan E Eichler
    posted to 2007 bioinformatics evolution genome genomics by hpaces to the group Bioinformatics on 2007-11-03 18:38:16 as ** along with 1 person zwang
  • The evolution of genome compression and genomic novelty in RNA viruses.
    Genome Res (4 September 2007)
    by Robert Belshaw, Oliver G G Pybus, Andrew Rambaut
    posted to rna genomics evolution by sleepingcell to the group Bioinformatics on 2007-09-07 06:26:17 as ** along with 4 people dayjm zwang xingxu RedmondSmyth
  • The Opossum genome reveals further evidence for regulatory evolution in mammalian diversification
    Genome Biology, Vol. 8 (09 August 2007), 223.
    by Bernardo Lemos
  • Molecular evolutionary genomics of birds.
    Cytogenet Genome Res, Vol. 117, No. 1-4. (2007), pp. 120-130.
    posted to genomics evolution chicken by sleepingcell to the group Bioinformatics on 2007-08-08 05:56:14 as **
  • Mutation rate variation in multicellular eukaryotes: causes and consequences
    Nature Reviews Genetics, Vol. 8, No. 8., pp. 619-631.
    by Charles F Baer, Michael M Miyamoto, Dee R Denver
  • The distribution of fitness effects of new mutations
    Nature Reviews Genetics, Vol. 8, No. 8., pp. 610-618.
    by Adam Eyre-Walker, Peter D Keightley
    posted to evolution by sleepingcell to the group Bioinformatics on 2007-07-21 07:20:57 as ** along with 3 people joepickrell massivemayhem gjuggler
  • Localizing Recent Adaptive Evolution in the Human Genome
    posted to evolution by sleepingcell to the group Bioinformatics on 2007-06-02 14:45:46 as ** along with 1 person djkt
  • Taxa, individuals, clusters and a few other things
    Biology and Philosophy, Vol. 21, No. 3. (15 June 2006), pp. 353-367.
    by Donald Colless
  • Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 545-555.
    by Hiroshi Kikuta, Mary Laplante, Pavla Navratilova, Anna Z Komisarczuk, Par G Engstrom, David Fredman, Altuna Akalin, Mario Caccamo, Ian Sealy, Kerstin Howe, Julien Ghislain, Guillaume Pezeron, Philippe Mourrain, Staale Ellingsen, Andrew C Oates, Christine Thisse, Bernard Thisse, Isabelle Foucher, Birgit Adolf, Andrea Geling, Boris Lenhard, Thomas S Becker
  • Statistical methods for detecting molecular adaptation.
    TRENDS IN ECOLOGY AND EVOLUTION, Vol. 15, No. 12. (1 December 2000), pp. 496-503.
    by Z Yang, JP Bielawski
  • Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 556-565.
    by Jasmina Ponjavic, Chris P Ponting, Gerton Lunter
  • A Test of Neutral Molecular Evolution Based on Nucleotide Data
    Genetics, Vol. 116, No. 1. (1 May 1987), pp. 153-159.
    by Richard R Hudson, Martin Kreitman, Montserrat Aguade
    posted to evolution molecular by kaspermunch to the group Bioinformatics on 2007-02-27 14:00:06 as ** along with 1 person djkt
  • Evolutionary dynamics on graphs
    Nature, Vol. 433, No. 7023. (20 January 2005), pp. 312-316.
    by Erez Lieberman, Christoph Hauert, Martin A Nowak
  • Darwin's dilemma: the realities of the Cambrian 'explosion'.
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1470. (29 June 2006), pp. 1069-1083.
  • Bushes in the Tree of Life
    PLoS Biology, Vol. 4, No. 11. (1 November 2006), e352.
    by Antonis Rokas, Sean B Carroll
  • Molecular evolution of a microRNA cluster in the PWS/AS region among mammals.
    Gene (1 March 2005)
    by Keisuke Onishi, Shintaroh Ueda
    posted to microrna ncrna evolution by bsmagic to the group Bioinformatics on 2006-11-16 13:31:06 as ** along with 1 person and 1 group mtagaya bioinplant
  • Evolution of small nucleolar RNAs in nematodes.
    Nucleic Acids Res, Vol. 34, No. 9. (2006), pp. 2676-2685.
  • Evolutionary patterns of non-coding RNAs
    Theory in Biosciences, Vol. 123, No. 4. (15 April 2005), pp. 301-369.
    by Athanasius F Bompfunewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L Hofacker, Jorg Lehmann, Kristin Missal, Axel Mosig, Bettina Muller, Sonja J Prohaska
    posted to evolution ncrna by bsmagic to the group Bioinformatics on 2006-11-16 13:27:43 as ** along with 3 people and 1 group evaf Eonwe ilh bioinplant
  • Accurate identification of alternatively spliced exons using support vector machine
    Bioinformatics, Vol. 21, No. 7. (Apr 2005), pp. 897-901.
    by G Dror, R Sorek, R Shamir
  • Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes
    RNA, Vol. 10, No. 7. (Jul 2004), pp. 1005-1018.
    by H Itoh, T Washio, M Tomita
  • How prevalent is functional alternative splicing in the human genome?
    Trends Genet, Vol. 20, No. 2. (Feb 2004), pp. 68-71.
    by R Sorek, R Shamir, G Ast
  • Alternative splicing, the gene concept, and evolution
    Hist Philos Life Sci, Vol. 26, No. 1. (2004)
    by SM Downes
  • Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila
    Genome Res, Vol. 14, No. 2. (Feb 2004), pp. 273-279.
    by DL Halligan, Eyre A Walker, P Andolfatto, PD Keightley
  • Identification and analysis of alternative splicing events conserved in human and mouse
    Proc Natl Acad Sci U S A, Vol. 102, No. 8. (Feb 2005), pp. 2850-2855.
    by GW Yeo, E Van Nostrand, D Holste, T Poggio, CB Burge
  • Integrating genomic homology into gene structure prediction
    Bioinformatics, Vol. 17 Suppl 1 (2001), pp. S140-S148.
    by I Korf, P Flicek, D Duan, MR Brent
  • A gene expression map for the euchromatic genome of Drosophila melanogaster
    Science, Vol. 306, No. 5696. (Oct 2004), pp. 655-660.
  • Gene finding with a hidden Markov model of genome structure and evolution
    Bioinformatics, Vol. 19, No. 2. (Jan 2003), pp. 219-227.
    by JS Pedersen, J Hein
  • How did alternative splicing evolve?
    Nat Rev Genet, Vol. 5, No. 10. (Oct 2004), pp. 773-782.
    by G Ast
  • Heuristic approach to deriving models for gene finding
    Nucleic Acids Res, Vol. 27, No. 19. (Oct 1999), pp. 3911-3920.
  • GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    Nucleic Acids Res, Vol. 29, No. 12. (Jun 2001), pp. 2607-2618.
  • PyEvolve: a toolkit for statistical modelling of molecular evolution
    BMC Bioinformatics, Vol. 5, No. 1. (Jan 2004)
  • Comparative analyses of multi-species sequences from targeted genomic regions
    Nature, Vol. 424, No. 6950. (Aug 2003), pp. 788-793.
    by JW Thomas, JW Touchman, RW Blakesley, GG Bouffard, Beckstrom SM Sternberg, EH Margulies, M Blanchette, AC Siepel, PJ Thomas, JC Mcdowell, B Maskeri, NF Hansen, MS Schwartz, RJ Weber, WJ Kent, D Karolchik, TC Bruen, R Bevan, DJ Cutler, S Schwartz, L Elnitski, JR Idol, AB Prasad, Lee SQ Lin, VV Maduro, TJ Summers, ME Portnoy, NL Dietrich, N Akhter, K Ayele, B Benjamin, K Cariaga, CP Brinkley, SY Brooks, S Granite, X Guan, J Gupta, P Haghighi, SL Ho, MC Huang, E Karlins, PL Laric, R Legaspi, MJ Lim, QL Maduro, CA Masiello, SD Mastrian, JC Mccloskey, R Pearson, S Stantripop, EE Tiongson, JT Tran, C Tsurgeon, JL Vogt, MA Walker, KD Wetherby, LS Wiggins, AC Young, LH Zhang, K Osoegawa, B Zhu, B Zhao, CL Shu, PJ De Jong, CE Lawrence, AF Smit, A Chakravarti, D Haussler, P Green, W Miller, ED Green
  • Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences
    Trends Genet, Vol. 19, No. 3. (Mar 2003), pp. 115-119.
    by FA Kondrashov, EV Koonin
  • Ultraconserved elements in the human genome
    Science, Vol. 304, No. 5675. (May 2004), pp. 1321-1325.
  • Initial sequencing and analysis of the human genome
    Nature, Vol. 409, No. 6822. (Feb 2001), pp. 860-921.
    by ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, K Devon, K Dewar, M Doyle, W Fitzhugh, R Funke, D Gage, K Harris, A Heaford, J Howland, L Kann, J Lehoczky, R Levine, P Mcewan, K Mckernan, J Meldrim, JP Mesirov, C Miranda, W Morris, J Naylor, C Raymond, M Rosetti, R Santos, A Sheridan, C Sougnez, Stange N Thomann, N Stojanovic, A Subramanian, D Wyman, J Rogers, J Sulston, R Ainscough, S Beck, D Bentley, J Burton, C Clee, N Carter, A Coulson, R Deadman, P Deloukas, A Dunham, I Dunham, R Durbin, L French, D Grafham, S Gregory, T Hubbard, S Humphray, A Hunt, M Jones, C Lloyd, A Mcmurray, L Matthews, S Mercer, S Milne, JC Mullikin, A Mungall, R Plumb, M Ross, R Shownkeen, S Sims, RH Waterston, RK Wilson, LW Hillier, JD Mcpherson, MA Marra, ER Mardis, LA Fulton, AT Chinwalla, KH Pepin, WR Gish, SL Chissoe, MC Wendl, KD Delehaunty, TL Miner, A Delehaunty, JB Kramer, LL Cook, RS Fulton, DL Johnson, PJ Minx, SW Clifton, T Hawkins, E Branscomb, P Predki, P Richardson, S Wenning, T Slezak, N Doggett, JF Cheng, A Olsen, S Lucas, C Elkin, E Uberbacher, M Frazier, RA Gibbs, DM Muzny, SE Scherer, JB Bouck, EJ Sodergren, KC Worley, CM Rives, JH Gorrell, ML Metzker, SL Naylor, RS Kucherlapati, DL Nelson, GM Weinstock, Y Sakaki, A Fujiyama, M Hattori, T Yada, A Toyoda, T Itoh, C Kawagoe, H Watanabe, Y Totoki, T Taylor, J Weissenbach, R Heilig, W Saurin, F Artiguenave, P Brottier, T Bruls, E Pelletier, C Robert, P Wincker, DR Smith, Doucette L Stamm, M Rubenfield, K Weinstock, HM Lee, J Dubois, A Rosenthal, M Platzer, G Nyakatura, S Taudien, A Rump, H Yang, J Yu, J Wang, G Huang, J Gu, L Hood, L Rowen, A Madan, S Qin, RW Davis, NA Federspiel, AP Abola, MJ Proctor, RM Myers, J Schmutz, M Dickson, J Grimwood, DR Cox, MV Olson, R Kaul, C Raymond, N Shimizu, K Kawasaki, S Minoshima, GA Evans, M Athanasiou, R Schultz, BA Roe, F Chen, H Pan, J Ramser, H Lehrach, R Reinhardt, WR Mccombie, de La, N Dedhia, H Blocker, K Hornischer, G Nordsiek, R Agarwala, L Aravind, JA Bailey, A Bateman, S Batzoglou, E Birney, P Bork, DG Brown, CB Burge, L Cerutti, HC Chen, D Church, M Clamp, RR Copley, T Doerks, SR Eddy, EE Eichler, TS Furey, J Galagan, JG Gilbert, C Harmon, Y Hayashizaki, D Haussler, H Hermjakob, K Hokamp, W Jang, LS Johnson, TA Jones, S Kasif, A Kaspryzk, S Kennedy, WJ Kent, P Kitts, EV Koonin, I Korf, D Kulp, D Lancet, TM Lowe, A Mclysaght, T Mikkelsen, JV Moran, N Mulder, VJ Pollara, CP Ponting, G Schuler, J Schultz, G Slater, AF Smit, E Stupka, J Szustakowski, Thierry D Mieg, Thierry J Mieg, L Wagner, J Wallis, R Wheeler, A Williams, YI Wolf, KH Wolfe, SP Yang, RF Yeh, F Collins, MS Guyer, J Peterson, A Felsenfeld, KA Wetterstrand, A Patrinos, MJ Morgan, J Szustakowki, P de Jong, JJ Catanese, K Osoegawa, H Shizuya, S Choi, YJ Chen
  • What makes species unique? The contribution of proteins with obscure features
    Genome Biology, Vol. 7 (19 July 2006), R57.
    by Martin Gollery, Jeff Harper, John Cushman, Taliah Mittler, Thomas Girke, Jian-Kang Zhu, Julia Bailey-Serres, Ron Mittler
  • Comparative Genomics of Brassica oleracea and Arabidopsis thaliana Reveal Gene Loss, Fragmentation, and Dispersal after Polyploidy
    Plant Cell, Vol. 18, No. 6. (1 June 2006), pp. 1348-1359.
    by Christopher D Town, Foo Cheung, Rama Maiti, Jonathan Crabtree, Brian J Haas, Jennifer R Wortman, Erin E Hine, Ryan Althoff, Tamara S Arbogast, Luke J Tallon, Marielle Vigouroux, Martin Trick, Ian Bancroft
  • Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.
    Nat Genet (31 July 2005)
    by Michele Morgante, Stephan Brunner, Giorgio Pea, Kevin Fengler, Andrea Zuccolo, Antoni Rafalski
  • A New Twist on Transposons: The Maize Genome Harbors Helitron Insertion
    Plant Cell, Vol. 15, No. 2. (1 February 2003), pp. 293-295.
    by Nancy A Eckardt
    p