jfr profile

Recent Activity

• 16:57: posted The need for standards, not guidelines, in biological data reporting and sharing
• 16:51: posted Standardizing the standards.
• 16:22: posted Are we stuck in the standards?

• 18:40: posted ArrayExpress service for reviewers/editors of DNA microarray papers
• 18:39: posted Lack of correct data format and comparability limits future integrative microarray research
• 18:32: posted Impact of microarray data quality on genomic data submissions to the FDA
• 10:01: posted Molecular signatures predict outcomes of breast cancer.

• 10:54: posted Sizing up miRNAs as cancer genes
• 10:51: posted Open software for biologists: from famine to feast
• 10:21: posted Linking oncogenic pathways with therapeutic opportunities

• 18:17: posted Gene-expression profiling in breast cancer.
• 18:15: posted MIAME, we have a problem.
• 18:13: posted Microarrays and molecular research: noise discovery?
• 18:11: posted Individualized care for patients with cancer - a work in progress.
• 18:08: posted Technology insight: Emerging techniques to predict response to preoperative chemotherapy in breast cancer.
• 18:07: posted Getting the Noise Out of Gene Arrays
• 18:06: posted Facts from text-is text mining ready to deliver?
• 18:04: posted Trawling for genes that predict response to breast cancer adjuvant therapy.
• 15:19: posted Clinical proteomics: translating benchside promise into bedside reality.
• 14:36: posted DNA microarrays in clinical cancer research.
• 14:32: posted In the pursuit of complexity: systems medicine in cancer biology.

• 17:38: posted Clinical trial design for microarray predictive marker discovery and assessment.
• 17:36: posted Targeted cancer therapy
• 17:33: posted Chipping away at the chip bias: RNA degradation in microarray analysis.
• 17:25: posted Microarray reality checks in the context of a complex disease.
• 14:47: posted Identification of gene interactions associated with disease from gene expression data using synergy networks
• 14:42: posted Sharing and reusing gene expression profiling data in neuroscience.
• 14:36: posted The use of logic relationships to model colon cancer gene expression networks with mRNA microarray data.
• 14:22: posted ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays
• 14:18: posted An improved method for detecting and delineating genomic regions with altered gene expression in cancer
• 14:10: posted Identification and validation of colorectal neoplasia-specific methylation markers for accurate classification of disease.
• 14:08: posted Spatial preferences of microRNA targets in 3' untranslated regions
• 14:05: posted Cross-generation and cross-laboratory predictions of Affymetrix microarrays by rank-based methods.

• 17:25: posted Regulation of microRNA expression: the hypoxic component.
• 17:19: posted A susceptibility gene set for early onset colorectal cancer that integrates diverse signaling pathways: implication for tumorigenesis.
• 17:15: posted A segmental maximum a posteriori approach to genome-wide copy number profiling.
• 17:08: posted Multimarker phenotype predicts adverse survival in patients with lymph node-negative colorectal cancer.
• 17:06: posted A genome-wide map of aberrantly expressed chromosomal islands in colorectal cancer
• 17:03: posted Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data.
• 16:50: posted Single nucleotide polymorphism array analysis of chromosomal instability patterns discriminates rectal adenomas from carcinomas
• 16:47: posted Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer
• 16:40: posted Array CGH identifies distinct DNA copy number profiles of oncogenes and tumor suppressor genes in chromosomal- and microsatellite-unstable sporadic colorectal carcinomas
• 16:38: posted Common and distinct genomic events in sporadic colorectal cancer and diverse cancer types.
• 16:34: posted Computational Methods for the Analysis of Array Comparative Genomic Hybridization.
• 16:29: posted Comprehensive analysis of loss of heterozygosity events in glioblastoma using the 100K SNP mapping arrays and comparison with copy number abnormalities defined by BAC array comparative genomic hybridization.

• 17:08: posted wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data.
• 17:05: posted Argonaute--a database for gene regulation by mammalian microRNAs.
• 14:27: posted Genomic analysis of epithelial ovarian cancer.
• 13:29: posted Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions.
• 13:26: posted Real-time quantification of microRNAs by stem-loop RT-PCR.
• 11:23: posted MicroRNAs accurately identify cancer tissue origin.
• 11:22: posted The minimum information about a genome sequence (MIGS) specification
• 09:11: posted Discovering microRNAs from deep sequencing data using miRDeep
• 09:09: posted Small is beautiful: microRNAs and breast cancer-where are we now?