neils profile

Recent Activity

• 00:13: Posted Sweet to the extreme: protein glycosylation in Archaea

• 07:54: Posted Evolution and dynamics of protein interactions and networks
• 04:29: Posted Terminal proteins of Streptomyces chromosome can target DNA into eukaryotic nuclei

• 06:41: Posted The statistical significance of nucleotide position-weight matrix matches
• 04:39: Posted Estimating the size of the human interactome
• 03:57: Posted The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information

• 13:09: Posted Biocomputational prediction of small non-coding RNAs in Streptomyces
• 09:16: Posted In pursuit of virtual lead optimization: The role of the receptor structure and ensembles in accurate docking
• 09:16: Added a note to In pursuit of virtual lead optimization: The role of the receptor structure and ensembles in accurate docking
• 00:10: Posted Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
• 00:02: Posted An in Vivo Map of the Yeast Protein Interactome

• 10:37: Posted The cytochromes c-550 of Paracoccus denitrificans and Thiosphaera pantotropha: a need for re-evaluation of the history of Paracoccus cultures
• 10:26: Posted An online database for the detection of novel archaeal sequences in human ESTs.
• 10:25: Posted Pathogenic archaea: do they exist?
• 10:24: Posted Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii.
• 10:24: Posted The NosX and NirX proteins of Paracoccus denitrificans are functional homologues: their role in maturation of nitrous oxide reductase.
• 10:23: Posted Transcriptional analysis of the nirS gene, encoding cytochrome cd1 nitrite reductase, of Paracoccus pantotrophus LMD 92.63.
• 10:21: Posted Transcription regulation of the nir gene cluster encoding nitrite reductase of Paracoccus denitrificans involves NNR and NirI, a novel type of membrane protein.
• 10:20: Posted Nitric oxide is a signal for NNR-mediated transcription activation in Paracoccus denitrificans.
• 10:19: Posted Cytochrome cd1 structure: unusual haem environments in a nitrite reductase and analysis of factors contributing to beta-propeller folds.
• 10:19: Posted Structural characterization of Paracoccus denitrificans cytochrome c peroxidase and assignment of the low and high potential heme sites.
• 10:18: Posted Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme.
• 10:17: Posted Disruption of the Pseudomonas aeruginosa dipZ gene, encoding a putative protein-disulfide reductase, leads to partial pleiotropic deficiency in c-type cytochrome biogenesis.
• 10:12: Posted A proteomic determination of cold adaptation in the Antarctic archaeon, Methanococcoides burtonii.
• 10:11: Posted Serpins in unicellular Eukarya, Archaea, and Bacteria: sequence analysis and evolution.
• 10:11: Posted Biology of the cold adapted archaeon, Methanococcoides burtonii determined by proteomics using liquid chromatography-tandem mass spectrometry.
• 10:09: Posted Predicted roles for hypothetical proteins in the low-temperature expressed proteome of the Antarctic archaeon Methanococcoides burtonii.
• 10:08: Posted Cold adaptation of the Antarctic archaeon, Methanococcoides burtonii assessed by proteomics using ICAT.
• 10:06: Posted Improved success of sparse matrix protein crystallization screening with heterogeneous nucleating agents.
• 10:06: Posted Fibroblast growth factor receptor 2 phosphorylation on serine 779 couples to 14-3-3 and regulates cell survival and proliferation.

• 09:12: Posted Computational evidence for the catalytic mechanism of glutaminyl cyclase. A DFT investigation
• 09:12: Added a note to Computational evidence for the catalytic mechanism of glutaminyl cyclase. A DFT investigation
• 03:10: Posted Kemp elimination catalysts by computational enzyme design

• 14:33: Added a comment to group forum thread Existing tags on import page
• 13:31: Added a comment to group forum thread Existing tags on import page
• 13:29: Posted Discovering sequence motifs with arbitrary insertions and deletions.
• 10:24: Added a group forum thread Existing tags on import page
• 10:19: Posted Fast protein tertiary structure retrieval based on global surface shape similarity
• 07:51: Posted Protein Disorder Is Positively Correlated with Gene Expression in Escherichia coli
• 07:49: Posted Identification and Characterization of Sulfolobus solfataricus P2 Proteome Using Multidimensional Liquid Phase Protein Separations
• 06:57: Posted Crystal Structure of the FK506 Binding Domain of Plasmodium falciparum FKBP35 in Complex with FK506
• 00:35: Posted The minimum information about a genome sequence (MIGS) specification
• 00:33: Posted Phosphorylation of Retinoblastoma Protein by Viral Protein with Cyclin-Dependent Kinase Function

• 08:29: Posted The Paradoxical Platypus
• 00:43: Posted Genome analysis of the platypus reveals unique signatures of evolution
• 00:43: Posted From the Cover: Extreme polyploidy in a large bacterium

• 02:37: Posted The Leucine-Rich Repeat Domain of Internalin B Folds along a Polarized N-Terminal Pathway

• 23:39: Posted Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
• 15:00: Posted Genomics of an extreme psychrophile, Psychromonas ingrahamii
• 14:13: Posted Vertebrate Genomes Code Excess Proteins with Charge Periodicity of 28 Residues

• 07:56: Posted Structural Evidence for Direct Interactions between the BRCT Domains of Human BRCA1 and a Phospho-peptide from Human ACC1
• 04:53: Added a comment to group forum thread Firefox 3 error message using CiteULike popup window
• 00:28: Posted Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
• 00:27: Posted SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences

• 05:56: Added a group forum thread Firefox 3 error message using CiteULike popup window
• 02:25: Posted Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS
• 02:19: Posted Life without RNase P

• 08:52: Posted A Mechanism for Src Kinase-Dependent Signaling by Noncatalytic Receptors

• 09:21: Posted Calcium-Dependent Heme Structure in the Reduced Forms of the Bacterial Cytochrome c Peroxidase from Paracoccus pantotrophus

• 06:38: Posted A Quick Guide for Computer-Assisted Instruction in Computational Biology and Bioinformatics
• 00:15: Posted Deconstruction of Iterative Multidomain Polyketide Synthase Function

• 12:05: Posted An evaluation of automated homology modelling methods at low target template sequence similarity
• 05:36: Posted Evidence of a chimeric genome in the cyanobacterial ancestor of plastids

• 01:52: Posted Constructing templates for protein structure prediction by simulation of protein folding pathways

• 16:22: Posted NetworKIN: a resource for exploring cellular phosphorylation networks
• 16:16: Posted Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.
• 09:09: Added a comment to group forum thread Author name error
• 06:50: Added a group forum thread Author name error
• 06:46: Posted Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis
• 00:39: Posted The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

• 13:49: Posted Pfam 10 years on: 10 000 families and still growing.
• 13:46: Posted ROC analysis: applications to the classification of biological sequences and 3D structures

• 02:55: Posted Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
• 02:53: Posted Identification of the source of ancient remains through genomic sequencing

• 23:38: Added a comment to group forum thread Export to Endnote returns 'Server error'
• 14:13: Added a comment to group forum thread Export to Endnote returns 'Server error'
• 05:05: Posted Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches
• 03:13: Posted Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data
• 03:12: Posted Predicting Co-Complexed Protein Pairs from Heterogeneous Data

• 07:51: Posted Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications

• 12:25: Posted Indicators from archaeal secretomes.

• 06:32: Posted Global Changes in and Characterization of Specific Sites of Phosphorylation in Mouse and Human Histone H1 Isoforms upon CDK Inhibitor Treatment Using Mass Spectrometry
• 04:43: Posted Evolvability and hierarchy in rewired bacterial gene networks
• 04:12: Posted Using peptide arrays to define nuclear carrier binding sites on nucleoporins
• 00:31: Posted Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles