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Ключевое слово 454 [51 articles]

Recent papers classified by the tag 454.
  • Phylogenetic classification of short environmental DNA fragments
    Nucl. Acids Res., Vol. 36, No. 7. (1 April 2008), pp. 2230-2239.
    by Lutz Krause, Naryttza N Diaz, Alexander Goesmann, Scott Kelley, Tim W Nattkemper, Forest Rohwer, Robert A Edwards, Jens Stoye
    posted to taxonomy community_genomics 454 by vrich on 2008-05-09 00:04:42 as **
  • Bacterial flora typing with deep, targeted, chip-based Pyrosequencing
    BMC Microbiology, Vol. 7 (30 November 2007), 108.
    by Andreas Sundquist, Saharnaz Bigdeli, Roxana Jalili, Maurice L Druzin, Sarah Waller, Krisin M Pullen, Yasser Y El-Sayed, Mark M Taslimi, Serafim Batzoglou, Mostafa Ronaghi
    posted to 454 16srrna by vrich on 2008-05-11 23:39:56 as **
  • Pyrosequencing enumerates and contrasts soil microbial diversity
    ISME J, Vol. 1, No. 4. (5 July 2007), pp. 283-290.
    by Luiz F Roesch, Roberta R Fulthorpe, Alberto Riva, George Casella, Alison K Hadwin, Angela D Kent, Samira H Daroub, Flavio A Camargo, William G Farmerie, Eric W Triplett
    posted to 454 by vrich on 2008-05-11 23:34:38 as ** along with 1 person darioacha
  • Short pyrosequencing reads suffice for accurate microbial community analysis
    Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), e120.
    by Zongzhi Liu, Catherine Lozupone, Micah Hamady, Frederic D Bushman, Rob Knight
  • Bacterial carbon processing by generalist species in the coastal ocean
    Nature (27 January 2008)
    by Xiaozhen Mou, Shulei Sun, Robert A Edwards, Robert E Hodson, Mary A Moran
  • Metagenomic and small-subunit rRNA analyses of the genetic diversity of bacteria, archaea, fungi, and viruses in soil
    Appl. Environ. Microbiol. (7 September 2007), AEM.00358-07.
    by Noah Fierer, Mya Breitbart, James Nulton, Peter Salamon, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert A Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, Robert B Jackson
    posted to community_genomics 454 16srrna by vrich on 2008-05-11 22:42:32 as ** along with 2 people mellabee kerekesj
  • Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach
    BMC Genomics, Vol. 7 (29 September 2006), 246.
    by Matthew N Bainbridge, Rene L Warren, Martin Hirst, Tammy Romanuik, Thomas Zeng, Anne Go, Allen Delaney, Malachi Griffith, Matthew Hickenbotham, Vincent Magarini, Elaine R Mardis, Marianne D Sadar, Asim S Siddiqui, Marco A Marra, Steven JM Jones
    posted to 454 sequencer by usagi-kirin on 2007-08-24 18:22:39 as **
  • Genome sequencing in microfabricated high-density picolitre reactors
    Nature (31 July 2005)
    by Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun H Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E Mcdade, Michael P Mckenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan F Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg
  • Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology
    BMC Genomics, Vol. 7 (24 October 2006), 272.
    by Foo Cheung, Brian J Haas, Susanne MD Goldberg, Gregory D May, Yongli Xiao, Christopher D Town
  • Gene discovery and annotation using LCM-454 transcriptome sequencing.
    Genome Res, Vol. 17, No. 1. (January 2007), pp. 69-73.
    by SJ Emrich, WB Barbazuk, L Li, PS Schnable
    posted to 454 sequencer by usagi-kirin on 2007-08-24 18:15:12 as ** along with 5 people semrich jyuh operon plofje ghattem
  • Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol, Vol. 144, No. 1. (May 2007), pp. 32-42.
    by AP Weber, KL Weber, K Carr, C Wilkerson, JB Ohlrogge
  • Robust analysis of 5'-transcript ends (5'-RATE): a novel technique for transcriptome analysis and genome annotation.
    Nucleic Acids Res, Vol. 34, No. 19. (2006)
    by M Gowda, H Li, J Alessi, F Chen, R Pratt, GL Wang
    posted to 454 sequencer by usagi-kirin on 2007-08-24 18:10:03 as ** along with 1 person jyuh
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
  • Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey
    BMC Genomics, Vol. 8 (24 May 2007), 132.
    by Kankshita Swaminathan, Kranthi Varala, Matthew E Hudson
  • 454 sequencing put to the test using the complex genome of barley
    BMC Genomics, Vol. 7 (26 October 2006), 275.
    by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J Close, Beat Keller, Nils Stein
  • Gene expression profiling by massively parallel sequencing
    Genome Res. (21 November 2007), gr.6984908.
    by Tatiana T Torres, Muralidhar Metta, Birgit Ottenwalder, Christian Schlotterer
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
  • Somatosensory cortex responses to median nerve stimulation: fMRI effects of current amplitude and selective attention.
    Clin Neurophysiol, Vol. 111, No. 10. (October 2000), pp. 1738-1744.
    posted to 454 by SinghalLab on 2007-05-23 18:06:40 as **
  • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    Nature Methods, Vol. 5, No. 3. (10 February 2008), pp. 235-237.
    by Micah Hamady, Jeffrey J Walker, Kirk J Harris, Nicholas J Gold, Rob Knight
  • A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases
    N Engl J Med, Vol. 358, No. 10. (6 March 2008), pp. 991-998.
    by Gustavo Palacios, Julian Druce, Lei Du, Thomas Tran, Chris Birch, Thomas Briese, Sean Conlan, Phenix-Lan Quan, Jeffrey Hui, John Marshall, Jan F Simons, Michael Egholm, Christopher D Paddock, Wun-Ju Shieh, Cynthia S Goldsmith, Sherif R Zaki, Mike Catton, Ian W Lipkin
    posted to virus self metagenomics 454 by sconlan on 2008-07-03 20:42:57 as read along with 1 person oelemento
  • A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder.
    Science (6 September 2007)
    by Diana L L Cox-Foster, Sean Conlan, Edward C C Holmes, Gustavo Palacios, Jay D D Evans, Nancy A A Moran, Phenix-Lan L Quan, Thomas Briese, Mady Hornig, David M M Geiser, Vince Martinson, Dennis Vanengelsdorp, Abby L L Kalkstein, Andrew Drysdale, Jeffrey Hui, Junhui Zhai, Liwang Cui, Stephen K K Hutchison, Jan Fredrik F Simons, Michael Egholm, Jeffery S S Pettis, W Ian I Lipkin
  • MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant.
    Genome Res (5 September 2006)
    by Cheng Lu, Karthik Kulkarni, Frédéric F F Souret, Ramesh Muthuvalliappan, Shivakundan Singh S Tej, R Scott S Poethig, Ian R R Henderson, Steven E E Jacobsen, Wenzhong Wang, Pamela J J Green, Blake C C Meyers
  • Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE).
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 910-916.
    by AA Bhinge, J Kim, GM Euskirchen, M Snyder, VR Iyer
  • Genome assembly forensics: finding the elusive mis-assembly
    Genome Biology, Vol. 9 (14 March 2008), R55.
    by Adam M Phillippy, Michael C Schatz, Mihai Pop
    posted to assembly 454 by GustavoLacerda on 2008-07-07 13:50:55 as ** along with 3 people Neeperando fernan lp2
  • Accuracy and quality of massively-parallel DNA pyrosequencing
    Genome Biology, Vol. 8 (20 July 2007), R143.
    by Susan M Huse, Julie A Huber, Hilary G Morrison, Mitchell L Sogin, David M Welch
  • Data handling strategies for high throughput pyrosequencers.
    BMC Bioinformatics, Vol. 8 Suppl 1 (2007)
    posted to 454 by GustavoLacerda on 2007-10-06 21:01:46 as ** along with 1 person ghattem
  • A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.
    Proc Natl Acad Sci U S A (13 July 2006)
    by Susanne M D M Goldberg, Justin Johnson, Dana Busam, Tamara Feldblyum, Steve Ferriera, Robert Friedman, Aaron Halpern, Hoda Khouri, Saul A A Kravitz, Federico M M Lauro, Kelvin Li, Yu-Hui H Rogers, Robert Strausberg, Granger Sutton, Luke Tallon, Torsten Thomas, Eli Venter, Marvin Frazier, J Craig C Venter
  • EagleView: a genome assembly viewer for next-generation sequencing technologies.
    Genome research (11 June 2008)
    by Weichun Huang, Gabor T T Marth
  • Quality scores and SNP detection in sequencing-by-synthesis systems
    Genome Res. (22 January 2008), gr.070227.107.
    by William Brockman, Pablo Alvarez, Sarah Young, Manuel Garber, Georgia Giannoukos, William L Lee, Carsten Russ, Eric S Lander, Chad Nusbaum, David B Jaffe
  • Molecular biology: Power sequencing
    Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1197-1198.
    by Brenton R Graveley
  • Assembling genomes on large-scale parallel computers
    Journal of Parallel and Distributed Computing, Vol. In Press, Corrected Proof
    posted to 454 by GustavoLacerda on 2007-11-25 00:17:58 as **
  • OSLay: optimal syntenic layout of unfinished assemblies
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1573-1579.
    by Daniel C Richter, Stephan C Schuster, Daniel H Huson
    posted to 454 assembly by GustavoLacerda on 2008-02-07 17:23:06 as **
  • Short read fragment assembly of bacterial genomes
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 324-330.
    by Mark J Chaisson, Pavel A Pevzner
  • The year of sequencing
    Nature Methods, Vol. 5, No. 1., pp. 11-14.
    by Kelly R Chi
    posted to 454 by GustavoLacerda on 2008-02-07 16:43:32 as **
  • A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1401-1414.
  • Common Functions for Diverse Small RNAs of Land Plants.
    Plant Cell (29 June 2007)
    by Michael J J Axtell, Jo Ann A Snyder, David P P Bartel
    posted to plant mirna 454 by andersbj to the group microRNA on 2007-07-04 09:21:37 as ***** along with 1 person and 1 group stajich Berkeley Mycology
  • High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes.
    PLoS ONE, Vol. 2 (2007)
    by N Fahlgren, MD Howell, KD Kasschau, EJ Chapman, CM Sullivan, JS Cumbie, SA Givan, TF Law, SR Grant, JL Dangl, JC Carrington
    posted to 454 arabidopsis mirna nonconserved by andersbj to the group microRNA on 2007-02-15 20:24:27 as ***** along with 3 people jmjimenez natstreet tardigrade
  • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.
    Genes Dev, Vol. 20, No. 24. (15 December 2006), pp. 3407-3425.
  • Diversity of microRNAs in human and chimpanzee brain.
    Nat Genet (29 October 2006)
    by Eugene Berezikov, Fritz Thuemmler, Linda W W van Laake, Ivanela Kondova, Ronald Bontrop, Edwin Cuppen, Ronald H A H Plasterk
  • Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5555-5560.
    by Yuichi Hongoh, Vineet K Sharma, Tulika Prakash, Satoko Noda, Todd D Taylor, Toshiaki Kudo, Yoshiyuki Sakaki, Atsushi Toyoda, Masahira Hattori, Moriya Ohkuma
  • Microbial Population Structures in the Deep Marine Biosphere
    Science, Vol. 318, No. 5847. (5 October 2007), pp. 97-100.
    by Julie A Huber, David B Welch, Hilary G Morrison, Susan M Huse, Phillip R Neal, David A Butterfield, Mitchell L Sogin
  • Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
    BMC Genomics, Vol. 8 (21 November 2007), 427.
    by Jiri Macas, Pavel Neumann, Alice Navratilova
    posted to 454 transposon by cisevol to the group BergmanLab on 2007-11-26 17:08:31 as **
  • GenomicsMassively parallel sequencing
    Nature, Vol. 437, No. 7057. (14 September 2005), pp. 326-327.
    by Yu-Hui Rogers, Craig J Venter
    posted to sequencing comment 454 by cdawson to the group GIG on 2007-04-14 11:00:20 as *** along with 3 people mcox dayjm arve
  • Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis.
    Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3318-3323.
    by HM Chen, YH Li, SH Wu
  • High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Evandro Novaes, Derek Drost, William Farmerie, Georgios Pappas, Dario Grattapaglia, Ronald Sederoff, Matias Kirst
    posted to eucalyptus est 454 by gpappas on 2008-06-30 15:38:40 as **** along with 1 person natstreet
  • Structural evolution of larger gold clusters
    Zeitschrift für Physik D Atoms, Molecules and Clusters, Vol. 40, No. 1. (1 May 1997), pp. 503-508.
    by , Charles L Cleveland, , Uzi Landman, , Marat N Shafigullin, , Peter W Stephens, , Robert L Whetten
    posted to 75 454 212 by davidpearmain on 2008-06-15 23:19:01 as **
  • The complete genome of an individual by massively parallel DNA sequencing
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876.
    by David A Wheeler, Maithreyan Srinivasan, Michael Egholm, Yufeng Shen, Lei Chen, Amy Mcguire, Wen He, Yi-Ju Chen, Vinod Makhijani, Thomas G Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L Turcotte, Gerard P Irzyk, James R Lupski, Craig Chinault, Xing-Zhi Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M Muzny, Marcel Margulies, George M Weinstock, Richard A Gibbs, Jonathan M Rothberg
  • notes Functional metagenomic profiling of nine biomes
    Nature (12 March 2008)
    by Elizabeth A Dinsdale, Robert A Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren Mcdaniel, Mary A Moran, Karen E Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R Brito, Yijun Ruan, Brandon K Swan, Rick Stevens, David L Valentine, Rebecca V Thurber, Linda Wegley, Bryan A White, Forest Rohwer
  • Microbial ecology of four coral atolls in the Northern Line Islands.
    PLoS ONE, Vol. 3, No. 2. (2008)
    by EA Dinsdale, O Pantos, S Smriga, RA Edwards, F Angly, L Wegley, M Hatay, D Hall, E Brown, M Haynes, L Krause, E Sala, SA Sandin, RV Thurber, BL Willis, F Azam, N Knowlton, F Rohwer
    posted to coral 454 by bluto on 2008-05-06 08:38:39 as read
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