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Ключевое слово acgh [54 articles]

Recent papers classified by the tag acgh.
  • Copy-number variation and association studies of human disease.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by SA McCarroll, DM Altshuler
    posted to acgh by rdiaz on 2007-10-17 11:34:43 as ** along with 6 people and 1 group jo_davies vplagnol jyuh mrkrause balicea jasonflannick Bioinformatics
  • The population genetics of structural variation.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by DF Conrad, ME Hurles
    posted to acgh by rdiaz on 2007-10-17 11:42:37 as ** along with 3 people jyuh mrkrause jlangdon
  • A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays.
    Cancer Res, Vol. 65, No. 14. (15 July 2005), pp. 6071-6079.
    by Y Nannya, M Sanada, K Nakazaki, N Hosoya, L Wang, A Hangaishi, M Kurokawa, S Chiba, DK Bailey, GC Kennedy, S Ogawa
    posted to acgh by rdiaz on 2007-03-26 17:04:57 as ** along with 4 people jfr bioguru2000 cpnP debasis
  • WebaCGH: an interactive online tool for the analysis and display of array comparative genomic hybridisation data.
    Appl Bioinformatics, Vol. 5, No. 2. (2006), pp. 125-130.
    by C Frankenberger, X Wu, J Harmon, D Church, LM Gangi, DJ Munroe, U Urzúa
    posted to acgh web by rdiaz on 2006-08-10 18:30:26 as ** along with 1 group Bioinformatics
  • Challenges and standards in integrating surveys of structural variation.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by SW Scherer, C Lee, E Birney, DM Altshuler, EE Eichler, NP Carter, ME Hurles, L Feuk
    posted to acgh by rdiaz on 2007-10-17 11:40:53 as read along with 4 people and 1 group jyuh bpb jlangdon jasonflannick Bioinformatics
  • Genomic microarrays in human genetic disease and cancer.
    Hum Mol Genet, Vol. 12 Spec No 2 (15 October 2003)
    by DG Albertson, D Pinkel
    posted to acgh by rdiaz on 2006-08-17 13:34:03 as read
  • CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data
    BMC Genomics, Vol. 7, No. 1. (2006)
    by Bradley Anderson, Michael Gilson, Abigail Scott, Bryan Biehl, Jeremy Glasner, Gireesh Rajashekara, Gary Splitter, Nicole Perna
    posted to acgh by rdiaz on 2007-03-26 16:01:07 as read
  • Genome-wide analysis of DNA copy-number changes using cDNA microarrays.
    Nat Genet, Vol. 23, No. 1. (September 1999), pp. 41-46.
    by JR Pollack, CM Perou, AA Alizadeh, MB Eisen, A Pergamenschikov, CF Williams, SS Jeffrey, D Botstein, PO Brown
    posted to acgh by rdiaz on 2006-08-10 13:55:33 as read
  • Mapping tumor-suppressor genes with multipoint statistics from copy-number-variation data.
    Am J Hum Genet, Vol. 79, No. 1. (July 2006), pp. 13-22.
    by I Ionita, RS Daruwala, B Mishra
    posted to acgh by rdiaz on 2006-08-10 16:45:20 as **** along with 1 person and 1 group OscarRueda Bioinformatics
  • arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.
    BMC Bioinformatics, Vol. 6 (2005)
    by B Menten, F Pattyn, K De Preter, P Robbrecht, E Michels, K Buysse, G Mortier, A De Paepe, S van Vooren, J Vermeesch, Y Moreau, B De Moor, S Vermeulen, F Speleman, J Vandesompele
    posted to acgh adacgh by rdiaz on 2006-12-20 13:53:20 as ****
  • MACAT--microarray chromosome analysis tool.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2112-2113.
    by J Toedling, S Schmeier, M Heinig, B Georgi, S Roepcke
    posted to acgh expression by rdiaz on 2006-08-10 17:45:42 as **
  • WebArray: an online platform for microarray data analysis.
    BMC Bioinformatics, Vol. 6 (2005)
    by X Xia, M McClelland, Y Wang
    posted to acgh adacgh by rdiaz on 2006-12-20 13:49:24 as ****
  • Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 459-464.
    by G Hodgson, JH Hager, S Volik, S Hariono, M Wernick, D Moore, N Nowak, DG Albertson, D Pinkel, C Collins, D Hanahan, JW Gray
    posted to acgh by rdiaz on 2006-08-10 14:00:38 as read
  • Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model.
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 911-918.
    by P Broët, S Richardson
    posted to acgh by rdiaz on 2006-08-10 16:15:40 as read along with 1 person OscarRueda
  • notes Computation of recurrent minimal genomic alterations from array-CGH data.
    Bioinformatics (24 January 2006)
    by C Rouveirol, N Stransky, Ph Hupé, Ph La Rosa, E Viara, E Barillot, F Radvanyi
    posted to acgh minimal-region by rdiaz on 2006-08-10 16:49:11 as **** along with 2 people archroad OscarRueda
  • ArrayCyGHt: a web application for analysis and visualization of array-CGH data.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2554-2555.
    by SY Kim, SW Nam, SH Lee, WS Park, NJ Yoo, JY Lee, YJ Chung
    posted to acgh web by rdiaz on 2006-08-10 17:44:29 as **
  • notes Breast tumor copy number aberration phenotypes and genomic instability.
    BMC Cancer, Vol. 6 (2006)
    by J Fridlyand, AM Snijders, B Ylstra, H Li, A Olshen, R Segraves, S Dairkee, T Tokuyasu, BM Ljung, AN Jain, J McLennan, J Ziegler, K Chin, S Devries, H Feiler, JW Gray, F Waldman, D Pinkel, DG Albertson
    posted to acgh by rdiaz on 2006-08-10 14:06:28 as ** along with 4 people jfr Garamonfok frohike chrisamiller
  • notes High-resolution characterization of the pancreatic adenocarcinoma genome
    PNAS, Vol. 101, No. 24. (15 June 2004), pp. 9067-9072.
    by Andrew J Aguirre, Cameron Brennan, Gerald Bailey, Raktim Sinha, Bin Feng, Christopher Leo, Yunyu Zhang, Jean Zhang, Joseph D Gans, Nabeel Bardeesy, Craig Cauwels, Carlos Cordon-Cardo, Mark S Redston, Ronald A Depinho, Lynda Chin
    posted to acgh expression minimal-region by rdiaz on 2006-08-10 17:09:11 as **** along with 2 people OscarRueda frohike
  • A new algorithm for detecting low-complexity regions in protein sequences
    Bioinformatics, Vol. 21, No. 2. (January 2005), pp. 160-170.
    by Sung W Shin, Sam M Kim
    posted to acgh by rdiaz on 2007-09-27 15:11:29 as ** along with 6 people nearora sdvillal florianleitner tale Bc91 Evangelia
  • GENOMICS: A Little Gene Xeroxing Goes a Long Way
    Science, Vol. 317, No. 5844. (14 September 2007), 1483a.
    by Jon Cohen
    posted to acgh by rdiaz on 2007-09-28 11:09:34 as **
  • CAPweb: a bioinformatics CGH array Analysis Platform.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by S Liva, P Hupé, P Neuvial, I Brito, E Viara, P La Rosa, E Barillot
    posted to acgh web by rdiaz on 2006-08-10 11:58:29 as **** along with 1 person jackjackjjj
  • Mutational and selective effects on copy-number variants in the human genome.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by GM Cooper, DA Nickerson, EE Eichler
    posted to acgh by rdiaz on 2007-10-17 11:49:36 as read along with 2 people and 1 group daed mrkrause Bioinformatics
  • notes Detection of DNA copy number alterations using penalized least squares regression.
    Bioinformatics (1 September 2005)
    by Tao Huang, Baolin Wu, Paul Lizardi, Hongyu Zhao
    posted to acgh web by rdiaz on 2006-08-10 17:34:38 as read along with 1 person pcahan1
  • Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability
    Nat Rev Genet, Vol. 8, No. 8. (2007), pp. 639-646.
    by Jacques S Beckmann, Xavier Estivill, Stylianos E Antonarakis
    posted to acgh by rdiaz on 2007-10-17 11:31:32 as read along with 1 person and 1 group ryanraaum Bioinformatics
  • STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments.
    Genome Res (9 August 2006)
    by Sharon J J Diskin, Thomas Eck, Joel Greshock, Yael P P Mosse, Tara Naylor, Christian J J Stoeckert, Barbara L L Weber, John M M Maris, Gregory R R Grant
    posted to acgh minimal-region web by rdiaz on 2006-08-11 11:26:46 as **** along with 1 person jfr
  • CGHPRO -- a comprehensive data analysis tool for array CGH.
    BMC Bioinformatics, Vol. 6 (2005)
    by W Chen, F Erdogan, HH Ropers, S Lenzner, R Ullmann
    posted to acgh web by rdiaz on 2006-08-10 17:48:13 as ** along with 1 person jackjackjjj
  • Methods and strategies for analyzing copy number variation using DNA microarrays.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by NP Carter
    posted to acgh by rdiaz on 2007-10-17 11:45:37 as ** along with 4 people and 1 group jo_davies jyuh jfr mrkrause Bioinformatics
  • What a difference copy number variation makes
    BioEssays, Vol. 29, No. 4. (2007), pp. 311-313.
    by Hildegard Kehrer-Sawatzki
    posted to acgh by rdiaz on 2007-10-29 08:48:59 as ** along with 5 people and 3 groups Zephyrus balicea dchughes cerami jyuh Bioinformatics G4ID Genetics-of-Gambling
  • CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data.
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3308-3311.
    by AA Margolin, J Greshock, TL Naylor, Y Mosse, JM Maris, G Bignell, AI Saeed, J Quackenbush, BL Weber
    posted to acgh web by rdiaz on 2006-08-10 18:28:29 as **
  • notes Integrating copy number polymorphisms into array CGH analysis using a robust HMM.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by SP Shah, X Xuan, RJ Deleeuw, M Khojasteh, WL Lam, R Ng, KP Murphy
    posted to acgh hmm by rdiaz on 2006-08-09 13:15:18 as ***** along with 4 people and 1 group pcahan1 OscarRueda jackjackjjj frohike Bioinformatics
  • A model-based scan statistic for identifying extreme chromosomal regions of gene expression in human tumors.
    Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2867-2874.
    by AM Levin, D Ghosh, KR Cho, SL Kardia
    posted to acgh by rdiaz on 2006-08-11 13:23:32 as read
  • An improved method for detecting and delineating genomic regions with altered gene expression in cancer
    Genome Biology, Vol. 9, No. 1. (2008)
    by Bjorn Nilsson, Mikael Johansson, Anders Heyden, Sven Nelander, Thoas Fioretos
    posted to acgh amplifications deletions emiel microarray by ptrobajo on 2008-04-04 22:30:54 as ** along with 4 people rdiaz natstreet barriot jfr
  • A fast and flexible method for the segmentation of aCGH data.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by E Ben-Yaacov, YC Eldar
    posted to acgh analysis data by nuin on 2008-08-12 18:09:48 as ** along with 2 people talponer aviad_work
  • Origin and functional significance of large-scale chromosomal imbalances in neuroblastoma.
    Cytogenet Genome Res, Vol. 118, No. 2-4. (2007), pp. 110-115.
    by RL Stallings
    posted to acgh chromosomal imbalance neuroblastoma by fpattyn to the group Neuroblastoma on 2007-11-21 12:57:27 as **
  • Technology: A new tool for analysing structural variation
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 822-822.
    by Magdalena Skipper
    posted to acgh cnv technique by ealloza to the group BioinfoCIPF on 2007-10-22 11:16:32 as ** along with 1 person rdiaz
  • Array comparative genomic hybridization and computational genome annotation in constitutional cytogenetics: suggesting candidate genes for novel submicroscopic chromosomal imbalance syndromes.
    Genet Med, Vol. 9, No. 9. (September 2007), pp. 642-649.
    by S Van Vooren, B Coessens, B De Moor, Y Moreau, JR Vermeesch
    posted to aberration acgh cytogenetics mining by ealloza to the group BioinfoCIPF on 2007-10-17 19:01:19 as **
  • BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data
    Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1144-1146.
    by JC Marioni, NP Thorne, S Tavare
    posted to acgh segmentation by ellakat on 2008-08-11 22:28:22 as **
  • A Probe-Density Based Analysis Method for Array CGH data: Simulation, Normalization and Centralization.
    Bioinformatics (Oxford, England) (4 July 2008)
    by Hung-I Harry I Chen, Fang-Han H Hsu, Yuan Jiang, Mong-Hsun H Tsai, Pan-Chyr C Yang, Paul S S Meltzer, Eric Y Y Chuang, Yidong Chen
    posted to acgh normalization by ellakat on 2008-08-12 00:20:19 as ** along with 3 people jfr talponer nuin
  • A comparison study: applying segmentation to array CGH data for downstream analyses
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4084-4091.
    by Hanni Willenbrock, Jane Fridlyand
    posted to acgh segmentation by ellakat on 2008-08-11 22:28:58 as ** along with 1 person shigepong
  • A faster circular binary segmentation algorithm for the analysis of array CGH data.
    Bioinformatics (18 January 2007)
    by E S S Venkatraman, A B B Olshen
    posted to acgh segmentation by ellakat on 2008-08-11 22:28:41 as ** along with 2 people and 1 group rdiaz shigepong Bioinformatics
  • Detection of large-scale variation in the human genome.
    Nat Genet, Vol. 36, No. 9. (September 2004), pp. 949-951.
    by AJ Iafrate, L Feuk, MN Rivera, ML Listewnik, PK Donahoe, Y Qi, SW Scherer, C Lee
    posted to acgh duplication genome-wide human variation by ealloza on 2008-04-14 12:49:15 as read along with 5 people and 2 groups daed pcahan1 dchughes bioguru2000 Ema G4ID Genetics-of-Gambling
  • Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer.
    Proceedings of the National Academy of Sciences of the United States of America (5 May 2008)
    by Lin Zhang, Stefano Volinia, Tomas Bonome, George Adrian A Calin, Joel Greshock, Nuo Yang, Chang-Gong G Liu, Antonis Giannakakis, Pangiotis Alexiou, Kosei Hasegawa, Cameron N N Johnstone, Molly S S Megraw, Sarah Adams, Heini Lassus, Jia Huang, Sippy Kaur, Shun Liang, Praveen Sethupathy, Arto Leminen, Victor A A Simossis, Raphael Sandaltzopoulos, Yoshio Naomoto, Dionyssios Katsaros, Phyllis A A Gimotty, Angela Demichele, Qihong Huang, Ralf Bützow, Anil K K Rustgi, Barbara L L Weber, Michael J J Birrer, Artemis G G Hatzigeorgiou, Carlo M M Croce, George Coukos
    posted to acgh cancer epigenetics human microrna by ealloza on 2008-05-26 10:54:01 as read along with 2 people maralena bootsy
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
    posted to acgh cgh cnv by colinveal on 2007-06-11 16:07:09 as read along with 27 people and 7 groups jo_davies psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
  • Feedback Circuit among INK4 Tumor Suppressors Constrains Human Glioblastoma Development
    Cancer Cell, Vol. 13, No. 4. (8 April 2008), pp. 355-364.
    by Ruprecht Wiedemeyer, Cameron Brennan, Timothy P Heffernan, Yonghong Xiao, John Mahoney, Alexei Protopopov, Hongwu Zheng, Graham Bignell, Frank Furnari, Webster K Cavenee, William C Hahn, Koichi Ichimura, Peter V Collins, Gerald C Chu, Michael R Stratton, Keith L Ligon, Andrew P Futreal, Lynda Chin
    posted to acgh algorithm cancer expression by chrisamiller on 2008-06-26 21:34:47 as **** along with 1 person crmlab
  • Novel patterns of genome rearrangement and their association with survival in breast cancer.
    Genome Res, Vol. 16, No. 12. (December 2006), pp. 1465-1479.
    by J Hicks, A Krasnitz, B Lakshmi, NE Navin, M Riggs, E Leibu, D Esposito, J Alexander, J Troge, V Grubor, S Yoon, M Wigler, K Ye, AL Børresen-Dale, B Naume, E Schlicting, L Norton, T Hägerström, L Skoog, G Auer, S Månér, P Lundin, A Zetterberg
    posted to acgh breast cancer firestorm by chrisamiller on 2008-06-26 22:30:49 as read along with 2 people jfr cerami
  • notes Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities
    Cancer Res, Vol. 66, No. 23. (1 December 2006), pp. 11502-11513.
    by Elizabeth A Maher, Cameron Brennan, Patrick Y Wen, Laura Durso, Keith L Ligon, Aaron Richardson, Deepak Khatry, Bin Feng, Raktim Sinha, David N Louis, John Quackenbush, Peter M Black, Lynda Chin, Ronald A Depinho
    posted to subtypes gbm cancer acgh by chrisamiller on 2008-09-25 04:01:45 as ****
  • A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes
    Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 515-527.
    by Richard M Neve, Koei Chin, Jane Fridlyand, Jennifer Yeh, Frederick L Baehner, Tea Fevr, Laura Clark, Nora Bayani, Jean-Philippe Coppe, Frances Tong
    posted to acgh breast cancer celllines clustering expression subtypes by chrisamiller on 2008-06-26 21:08:43 as read along with 4 people jfr lhonigberg jayster4 jdiezperezj
  • Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
    Proceedings of the National Academy of Sciences (6 December 2007), 0710052104.
    by Rameen Beroukhim, Gad Getz, Leia Nghiemphu, Jordi Barretina, Teli Hsueh, David Linhart, Igor Vivanco, Jeffrey C Lee, Julie H Huang, Sethu Alexander, Jinyan Du, Tweeny Kau, Roman K Thomas, Kinjal Shah, Horacio Soto, Sven Perner, John Prensner, Ralph M Debiasi, Francesca Demichelis, Charlie Hatton, Mark A Rubin, Levi A Garraway, Stan F Nelson, Linda Liau, Mischel, Tim F Cloughesy, Matthew Meyerson, Todd A Golub, Eric S Lander, Ingo K Mellinghoff, William R Sellers
    posted to acgh algorithm cancer recurrence by chrisamiller on 2008-06-26 21:12:17 as read along with 5 people and 2 groups srp33 jfr oelemento cerami loopback007 Cancer_Stem_Cells Glioma Reviews
  • notes High resolution genomic analysis of sporadic breast cancer using array-based comparative genomic hybridization
    Breast Cancer Research, Vol. 7, No. 6. (2005), pp. R1186-R1198.
    by Tara Naylor, Joel Greshock, Yan Wang, Theresa Colligon, QC Yu, Virginia Clemmer, Tal Zaks, Barbara Weber
    posted to acgh breast cancer celllines tumors by chrisamiller on 2008-06-26 21:36:49 as ***
  • Genomic and transcriptional aberrations linked to breast cancer pathophysiologies.
    Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 529-541.
    by K Chin, S DeVries, J Fridlyand, PT Spellman, R Roydasgupta, WL Kuo, A Lapuk, RM Neve, Z Qian, T Ryder, F Chen, H Feiler, T Tokuyasu, C Kingsley, S Dairkee, Z Meng, K Chew, D Pinkel, A Jain, BM Ljung, L Esserman, DG Albertson, FM Waldman, JW Gray
    posted to acgh breast cancer clustering expression subtypes tumors by chrisamiller on 2008-06-26 21:07:44 as read along with 2 people jfr frohike
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