Регистрация | Вход в службу | FAQ      [?] 

Ключевое слово affy [103 articles]

Recent papers classified by the tag affy.
  • Biological function of unannotated transcription during the early development of Drosophila melanogaster
    Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158.
    by Robert J Manak, Sujit Dike, Victor Sementchenko, Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R Gingeras
    posted to affy development drosophila transcription by Stew on 2007-09-21 21:03:24 as read along with 7 people and 6 groups GeeSharpMinor emptyhb dpollard neveaire djkt wrowell xingxu Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience Cline_lab
  • Calibrating the Performance of SNP Arrays for Whole-Genome Association Studies
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000109.
    by Ke Hao, Eric E Schadt, John D Storey
    posted to affy arrays association snp by Stew on 2008-07-07 08:45:06 as **** along with 4 people brianb caseybrown balicea jyuh
  • Defining the epithelial stem cell niche in skin.
    Science, Vol. 303, No. 5656. (16 January 2004), pp. 359-363.
    by T Tumbar, G Guasch, V Greco, C Blanpain, WE Lowry, M Rendl, E Fuchs
    posted to affy cells epithelial expression skin stem by Stew on 2008-08-14 13:59:06 as ** along with 1 person journal888
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    Nucleic Acids Research, Vol. 33, No. 20. (2005), pp. e175-e175.
    by Manhong Dai, Pinglang Wang, Andrew D Boyd, Georgi Kostov, Brian Athey, Edward G Jones, William E Bunney, Richard M Myers, Terry P Speed, Huda Akil, Stanley J Watson, Fan Meng
    posted to affy microarray by shikin on 2008-06-02 15:09:44 as ** along with 9 people and 2 groups giovenko pcahan1 frohike incovoma nicholso heliopais Montrachet bertelsen waszak Bioinformatics GeneGo
  • Probe set algorithms: Is there a rational best bet?
    BMC Bioinformatics, Vol. 7 (30 August 2006), 395.
    by Jinwook Seo, Eric P Hoffman
    posted to affy microarray normalization by shikin on 2008-05-06 17:59:11 as ** along with 5 people heliopais jfr ghattem rschulz bertelsen
  • Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms
    Nucleic Acids Research, Vol. 33, No. 18. (2005), pp. 5914-5923.
    by Michael Barnes, Johannes Freudenberg, Susan Thompson, Bruce Aronow, Paul Pavlidis
    posted to affy illumina microarray by raylim on 2008-06-10 21:44:52 as ** along with 1 person heliopais
  • affy--analysis of Affymetrix GeneChip data at the probe level.
    Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 307-315.
    by L Gautier, L Cope, BM Bolstad, RA Irizarry
    posted to affy microarray r by raylim on 2008-06-07 00:53:31 as * along with 5 people and 1 group gupton RMGraze kengg bertelsen heliopais Plantandetc
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.
    Nucleic Acids Res, Vol. 33, No. 20. (2005)
    by M Dai, P Wang, AD Boyd, G Kostov, B Athey, EG Jones, WE Bunney, RM Myers, TP Speed, H Akil, SJ Watson, F Meng
    posted to affy expression by pcahan1 on 2006-08-11 19:42:25 as read along with 2 people jfr tuck
  • Genome-wide analysis of transcript isoform variation in humans.
    Nat Genet (13 January 2008)
    by Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, Cathy Provencher, Patrick Beaulieu, Thomas J J Hudson, Rob Sladek, Jacek Majewski
    posted to affy ceph exonarray splice transcriptomic by nicholso on 2008-03-11 14:20:58 as ** along with 7 people GeeSharpMinor jo_davies caseybrown stoffreg meiklej vplagnol jyuh
  • Exon arrays provide accurate assessments of gene expression
    Genome Biology, Vol. 8 (15 May 2007), R82.
    by Karen Kapur, Yi Xing, Zhengqing Ouyang, Wing H Wong
    posted to affy bg exonarray transcriptomic by nicholso on 2008-03-10 15:21:44 as read along with 4 people GeeSharpMinor jfr bertelsen srp33
  • A model of molecular interactions on short oligonucleotide microarrays.
    Nat Biotechnol, Vol. 21, No. 7. (July 2003), pp. 818-821.
    by L Zhang, MF Miles, KD Aldape
    posted to affy bg transcriptomic by nicholso on 2008-03-10 16:22:43 as ** along with 3 people caseybrown bertelsen talponer
  • Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays.
    Nucleic Acids Res, Vol. 31, No. 7. (1 April 2003), pp. 1962-1968.
    by D Hekstra, AR Taussig, M Magnasco, F Naef
    posted to affy bg transcriptomic by nicholso on 2008-03-13 21:57:46 as ** along with 1 person bertelsen
  • Heritability of alternative splicing in the human genome
    Genome Res., Vol. 17, No. 8. (1 August 2007), pp. 1210-1218.
    by Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, David Serre, Harry Zuzan, Tyson A Clark, Anthony Schweitzer, Michelle K Staples, Hui Wang, John E Blume, Thomas J Hudson, Rob Sladek, Jacek Majewski
    posted to affy exonarray splice transcriptomic by nicholso on 2008-04-24 10:03:27 as ** along with 8 people and 3 groups dchughes xingxu msomel caseybrown jo_davies ramensky popgen jyuh Bioinformatics G4ID Genetics-of-Gambling
  • Identification of genetic variants contributing to cisplatin-induced cytotoxicity by use of a genomewide approach.
    Am J Hum Genet, Vol. 81, No. 3. (September 2007), pp. 427-437.
    by RS Huang, S Duan, SJ Shukla, EO Kistner, TA Clark, TX Chen, AC Schweitzer, JE Blume, ME Dolan
    posted to affy exonarray transcriptomic by nicholso on 2008-03-11 14:15:01 as ** along with 2 people caseybrown jyuh
  • The RIN: an RNA integrity number for assigning integrity values to RNA measurements.
    BMC Mol Biol, Vol. 7 (2006)
    by A Schroeder, O Mueller, S Stocker, R Salowsky, M Leiber, M Gassmann, S Lightfoot, W Menzel, M Granzow, T Ragg
    posted to affy rin by nicholso on 2007-07-19 10:23:22 as read along with 3 people and 1 group jyuh jfr cdawson GIG
  • Preprocessing of oligonucleotide array data
    Nat Biotech, Vol. 22, No. 6. (June 2004), pp. 656-658.
    by Zhijin Wu, Rafael A Irizarry
    posted to affy bg transcriptomic by nicholso on 2008-03-10 17:16:36 as ** along with 1 person RMGraze
  • Stochastic models inspired by hybridization theory for short oligonucleotide arrays.
    J Comput Biol, Vol. 12, No. 6. (g 2005), pp. 882-893.
    by Z Wu, RA Irizarry
    posted to affy bg transcriptomic by nicholso on 2008-03-10 16:19:03 as ** along with 2 people miguel rschulz
  • Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 68, No. 1 Pt 1. (July 2003)
    by F Naef, MO Magnasco
    posted to affy bg transcriptomic by nicholso on 2008-03-10 15:29:27 as read along with 3 people Dax42 bertelsen GeeSharpMinor
  • notes Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data.
    BMC Bioinformatics, Vol. 7 (2006)
    by L Jones, DR Goldstein, G Hughes, AD Strand, F Collin, SB Dunnett, C Kooperberg, A Aragaki, JM Olson, SJ Augood, RL Faull, R Luthi-Carter, V Moskvina, AK Hodges
    posted to affy rin by nicholso on 2007-07-18 15:20:10 as read along with 3 people jfr ghattem bertelsen
  • Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays.
    Cancer Res, Vol. 67, No. 12. (15 June 2007), pp. 5635-5642.
    by PJ French, J Peeters, S Horsman, E Duijm, I Siccama, MJ van den Bent, TM Luider, JM Kros, P van der Spek, PA Sillevis Smitt
    posted to affy exonarray splice transcriptomic by nicholso on 2008-03-11 14:22:27 as ** along with 1 person srp33
  • A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.
    Bioinformatics (25 April 2007)
    by Yuanyuan Xiao, Mark R R Segal, Y H H Yang, Ru-Fang F Yeh
    posted to affy by jyuh on 2007-08-01 11:06:53 as ** along with 2 people jfr shigepong
  • Methods for evaluating gene expression from Affymetrix microarray datasets
    BMC Bioinformatics, Vol. 9 (17 June 2008), 284.
    by Ning Jiang, Lindsey J Leach, Xiaohua Hu, Elena Potokina, Tianye Jia, Arnis Druka, Robbie Waugh, Michael J Kearsey, Zewei Luo
    posted to microarray affy by jyuh on 2008-07-05 01:07:21 as ** along with 6 people heliopais caseybrown jfr gabe_rosser tonia_schwartz winterschlaefer
  • Establishment of a protocol for the gene expression analysis of laser microdissected rat kidney samples with affymetrix genechips.
    Toxicol Appl Pharmacol, Vol. 217, No. 1. (15 November 2006), pp. 134-142.
    by K Stemmer, H Ellinger-Ziegelbauer, K Lotz, HJ Ahr, DR Dietrich
    posted to affy ckd by jyuh on 2007-08-25 07:00:18 as **
  • Performance of different small sample RNA amplification techniques for hybridization on Affymetrix GeneChips.
    J Biotechnol, Vol. 129, No. 4. (10 May 2007), pp. 628-634.
    by F Wagner, U Radelof
    posted to affy wga by jyuh on 2007-07-15 10:39:15 as **
  • AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
    Bioinformatics (27 July 2007)
    by Hongfang Liu, Barry R R Zeeberg, Qu Gang, A Gunes G Koru, Alessandro Ferrucci, Ari Kahn, Michael C C Ryan, Antej Nuhanovic, Peter J J Munson, William C C Reinhold, David W W Kane, John N N Weinstein
    posted to affy microarray by jyuh on 2007-08-18 05:28:10 as ** along with 7 people giovenko jfr ghattem ryanraaum heliopais Montrachet bertelsen
  • A comprehensive re-analysis of the Golden Spike data: towards a benchmark for differential expression methods
    BMC Bioinformatics, Vol. 9 (26 March 2008), 164.
    by Richard D Pearson
    posted to affy by jyuh on 2008-08-25 04:44:18 as ** along with 1 person bertelsen
  • BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips
    BMC Bioinformatics, Vol. 8 (12 November 2007), 439.
    by Ernest Turro, Natalia Bochkina, Anne-Mette K Hein, Sylvia Richardson
    posted to r microarray bayes affy by jyuh on 2008-09-24 04:18:12 as ** along with 3 people jfr shigepong waszak
  • Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
    BMC Bioinformatics, Vol. 8 (15 January 2007), 13.
    by Maria A Stalteri, Andrew P Harrison
    posted to affy by jyuh on 2007-08-18 05:29:27 as ** along with 7 people jfr gpalidwor hpiwowar frohike ghattem bertelsen heliopais
  • Exon-Level Expression Profiling: A Comprehensive Transcriptome Analysis of Oral Fluids
    Clin Chem, Vol. 54, No. 5. (1 May 2008), pp. 824-832.
    by Zhanzhi Hu, Bernhard G Zimmermann, Hui Zhou, Jianghua Wang, Bradley S Henson, Weixia Yu, David Elashoff, Guido Krupp, David T Wong
    posted to wga saliva microarray affy by jyuh on 2008-05-01 03:30:20 as **
  • On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation
    Biology Direct, Vol. 3 (03 June 2008), 23.
    by Wing-Cheong Wong, Marie Loh, Frank Eisenhaber
    posted to affy cross-platform illumina by jyuh on 2008-07-25 11:29:37 as ** along with 3 people heliopais ptrobajo jfr
  • IGG: A Tool to Integrate GeneChips for Genetic Studies
    Bioinformatics (14 September 2007), btm458.
    by Li Miao-Xin, Jiang Lin, Ho, Song You-Qiang, Sham
    posted to affy illumina by jyuh on 2008-03-16 03:06:50 as ** along with 1 person rdiaz
  • nuID: A universal naming schema of oligonucleotides for Illumina, Affymetrix, and other microarrays
    Biology Direct, Vol. 2 (31 May 2007), 16.
    by Pan Du, Warren A Kibbe, Simon M Lin
    posted to affy illumina name r by jyuh on 2008-07-14 04:21:47 as ** along with 2 people heliopais jfr
  • EzArray: a web-based highly automated Affymetrix expression array data management and analysis system
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuerong Zhu, Yuelin Zhu, Wei Xu
    posted to microarray affy by jyuh on 2008-02-01 02:16:08 as ** along with 5 people and 1 group Zephyrus cannin heliopais jfr zhouyu Roswell Cancer Crosstalk
  • Salvaging Affymetrix probes after probe-level re-annotation.
    BMC research notes, Vol. 1, No. 1. (19 August 2008)
    by Wim W de Leeuw, Han H Rauwerda, Martijs M Jonker, Timo T Breit
    posted to microarray affy by jyuh on 2008-09-07 06:13:19 as ** along with 2 people heliopais bertelsen
  • PQN and DQN: algorithms for expression microarrays.
    J Theor Biol, Vol. 243, No. 2. (21 November 2006), pp. 273-278.
    by WM Liu, R Li, JZ Sun, J Wang, J Tsai, W Wen, A Kohlmann, PM Williams
    posted to affy low_level methodology by jfr on 2007-05-11 14:43:09 as *
  • affyGG: Computational protocols for genetical genomics with Affymetrix arrays
    Bioinformatics (16 December 2007), btm614.
    by Rudi Alberts, Gonzalo Vera, Ritsert C Jansen
    posted to affy qtl software by jfr on 2008-06-13 16:44:49 as ** along with 2 people djkt giovanni
  • The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies.
    BMC Bioinformatics, Vol. 7 (2006)
    by RG Verhaak, FJ Staal, PJ Valk, B Lowenberg, MJ Reinders, D de Ridder
    posted to affy evaluation low_level by jfr on 2007-11-23 15:31:50 as * along with 3 people RMGraze ghattem frohike
  • Probe selection for high-density oligonucleotide arrays.
    Proc Natl Acad Sci U S A, Vol. 100, No. 20. (30 September 2003), pp. 11237-11242.
    by R Mei, E Hubbell, S Bekiranov, M Mittmann, FC Christians, MM Shen, G Lu, J Fang, WM Liu, T Ryder, P Kaplan, D Kulp, TA Webster
    posted to affy annotation probe_design by jfr on 2007-07-20 17:17:06 as **
  • Utilization of two sample t-test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies.
    BMC Bioinformatics, Vol. 7 (2006)
    by Z Hu, GR Willsky
    posted to affy low_level by jfr on 2006-12-15 16:49:47 as **
  • How high is the level of technical noise in microarray data?
    Biology Direct, Vol. 2 (11 April 2007), 9.
    by Lev Klebanov, Andrei Yakovlev
    posted to affy low_level by jfr on 2007-07-10 11:36:56 as * along with 2 people ghattem heliopais
  • How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results.
    BMC Bioinformatics, Vol. 7 (2006)
    by FF Millenaar, J Okyere, ST May, M van Zanten, LA Voesenek, AJ Peeters
    posted to feature_selection evaluation affy by jfr on 2007-01-10 13:59:46 as * along with 6 people GeeSharpMinor gabe_rosser neveaire ghattem waszak pure39
  • Robust estimators for expression analysis.
    Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1585-1592.
    by E Hubbell, WM Liu, R Mei
    posted to methodology low_level affy by jfr on 2007-01-11 13:55:03 as * along with 2 people GeeSharpMinor wirawan
  • SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 57-63.
    by Jianping Hua, David W Craig, Marcel Brun, Jennifer Webster, Victoria Zismann, Waibhav Tembe, Keta Joshipura, Matthew J Huentelman, Edward R Dougherty, Dietrich A Stephan
    posted to affy genotyping software snp-arrays by jfr on 2008-02-12 10:57:43 as ** along with 1 person Ayest
  • Accurately quantifying low-abundant targets amid similar sequences by revealing hidden correlations in oligonucleotide microarray data.
    Proc Natl Acad Sci U S A, Vol. 103, No. 37. (12 September 2006), pp. 13629-13634.
    by LA Marcelino, V Backman, A Donaldson, C Steadman, JR Thompson, SP Preheim, C Lien, E Lim, D Veneziano, MF Polz
    posted to microarray_technology low_level affy by jfr on 2007-01-10 13:11:15 as *
  • Exploratory methods for checking quality of microarray data.
    Bioinformation, Vol. 1, No. 10. (2007), pp. 423-428.
    by EK Lee, T Park
    posted to affy quality_control by jfr on 2007-09-05 11:43:20 as **
  • A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat
    BMC Bioinformatics, Vol. 8 (20 April 2007), 132.
    by Rudi Alberts, Peter Terpstra, Menno Hardonk, Leonid V Bystrykh, Gerald de Haan, Rainer Breitling, Jan-Peter Nap, Ritsert C Jansen
    posted to affy annotation by jfr on 2007-07-19 14:37:31 as ** along with 2 people jyuh ghattem
  • High correspondence between Affymetrix exon and standard expression arrays.
    Biotechniques, Vol. 42, No. 2. (February 2007), pp. 181-185.
    by MJ Okoniewski, Y Hey, SD Pepper, CJ Miller
    posted to affy exon_arrays gene_expression by jfr on 2008-02-15 16:01:31 as read
  • An application for assessing quality of RNA hybridized to Affymetrix GeneChips.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2699-2701.
    by KJ Archer, T Guennel
    posted to affy microarray_technology quality_control by jfr on 2007-09-04 17:05:33 as ** along with 2 people ghattem waszak
  • Improved precision and accuracy for microarrays using updated probe set definitions
    BMC Bioinformatics, Vol. 8 (08 February 2007), 48.
    by Rickard Sandberg, Ola Larsson
    posted to affy annotation by jfr on 2007-06-08 16:06:37 as ** along with 5 people gpalidwor shigepong ghattem heliopais bertelsen
  • An analysis of intra array repeats: the good, the bad and the non informative
    BMC Genomics, Vol. 7 (05 June 2006), 136.
    by Yedid Elbez, Shlomit Farkash-Amar, Itamar Simon
    posted to affy bioinformatics by jfr on 2007-01-09 10:09:18 as **
    • Вы можете ссылаться на эту страницу по адресу: http://www.citeulike.org/tag/affy

    Result page: 1 2 3 Next RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.