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Ключевое слово alternative-splicing [47 articles]

Recent papers classified by the tag alternative-splicing.
  • A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing.
    Genome Res (24 May 2007)
    by Rodger B B Voelker, J Andrew A Berglund
    posted to alternative-splicing evolution introns by rvoelker on 2008-01-16 19:56:44 as read along with 4 people and 2 groups dchughes djkt olympos lilou G4ID Genetics-of-Gambling
  • Splicing graphs and EST assembly problem.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by S Heber, M Alekseyev, SH Sze, H Tang, PA Pevzner
    posted to alternative-splicing genome-annotation by nedwards on 2007-08-08 13:54:19 as ** along with 3 people and 1 group greg setar Cortel spliceml
  • The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome.
    Nucleic Acids Res, Vol. 32, No. 13. (2004), pp. 3977-3983.
    by J Leipzig, P Pevzner, S Heber
    posted to alternative-splicing genome-annotation by nedwards on 2007-08-08 13:54:51 as ** along with 6 people and 1 group greg setar Cortel radek dchughes antonkratz spliceml
  • Human X-Box binding protein-1 confers both estrogen independence and antiestrogen resistance in breast cancer cell lines
    FASEB J. (27 July 2007), fj.06-7990com.
    by Bianca P Gomez, Rebecca B Riggins, Ayesha N Shajahan, Uwe Klimach, Aifen Wang, Anatasha C Crawford, Yuelin Zhu, Alan Zwart, Mingyue Wang, Robert Clarke
    posted to alternative-splicing breast-cancer cancer by nedwards on 2007-09-12 02:29:26 as **
  • Expression of Mouse Abcg2 mRNA during Hematopoiesis Is Regulated by Alternative Use of Multiple Leader Exons and Promoters
    J. Biol. Chem., Vol. 281, No. 40. (6 October 2006), pp. 29625-29632.
    by Yang Zong, Sheng Zhou, Soghra Fatima, Brian P Sorrentino
    posted to alternative-splicing by nedwards on 2007-08-29 15:56:44 as **
  • Genome-wide analysis of transcript isoform variation in humans.
    Nat Genet (13 January 2008)
    by Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, Cathy Provencher, Patrick Beaulieu, Thomas J J Hudson, Rob Sladek, Jacek Majewski
    posted to alternative-splicing transcription by meiklej on 2008-02-07 15:46:56 as ** along with 7 people GeeSharpMinor nicholso jo_davies caseybrown stoffreg vplagnol jyuh
  • Extraction of transcript diversity from scientific literature.
    PLoS Comput Biol, Vol. 1, No. 1. (June 2005)
    by PK Shah, LJ Jensen, S Boué, P Bork
    posted to information-extraction alternative-splicing by larsjuhljensen on 2008-03-24 14:45:46 as read along with 3 people and 1 group Cortel yas zlu T_lab
  • SRprises along a messenger's journey.
    Mol Cell, Vol. 17, No. 5. (4 March 2005), pp. 613-615.
    by Y Huang, JA Steitz
    posted to alternative-splicing cell-biology mrna nuclear-export by imouthesmp on 2005-09-20 01:43:49 as ***
  • The mutually exclusive flip and flop exons of AMPA receptor genes were derived from an intragenic duplication in the vertebrate lineage.
    J Mol Evol, Vol. 62, No. 2. (February 2006), pp. 121-131.
    by YC Chen, WH Lin, DW Tzeng, WY Chow
    posted to alternative-splicing ampa-receptor by dchughes to the group G4ID on 2006-03-30 10:11:24 as ** along with 1 person and 1 group Iden-J_GluR Genetics-of-Gambling
  • Modern origin of numerous alternatively spliced human introns from tandem arrays
    PNAS, Vol. 104, No. 3. (16 January 2007), pp. 882-886.
    by Degen Zhuo, Richard Madden, Sherif A Elela, Benoit Chabot
    posted to human-genome human-genetics alternative-splicing by dchughes to the group G4ID on 2007-01-17 12:55:47 as ** along with 3 people and 3 groups grahamc usagi-kirin paulcartwright ParkinsonLab_at_MaRS Genetics-of-Gambling BergmanLab
  • Differing patterns of selection in alternative and constitutive splice sites
    Genome Res. (7 June 2007), gr.6347907.
    by Kavita Garg, Phil Green
    posted to alternative-splicing by dchughes to the group G4ID on 2007-09-17 13:00:32 as ** along with 3 people and 1 group jcaddy djkt olympos Genetics-of-Gambling
  • RNA-binding proteins switch gears to drive alternative splicing in neurons
    Nat Struct Mol Biol, Vol. 14, No. 7. (July 2007), pp. 577-579.
    by Paula J Grabowski
    posted to splicing neuroscience neuron alternative-splicing by dchughes to the group G4ID on 2007-07-06 11:30:52 as ** along with 1 person and 1 group N0131826 Genetics-of-Gambling
  • Alternative splicing in human transcriptome: Functional and structural influence on proteins
    Gene, Vol. 380, No. 2. (1 October 2006), pp. 63-71.
    by Kei Yura, Masafumi Shionyu, Kei Hagino, Atsushi Hijikata, Yoshinori Hirashima, Taku Nakahara, Tatsuya Eguchi, Kazuki Shinoda, Akihiro Yamaguchi, Ken-Ichi Takahashi
    posted to alternative-splicing by dchughes to the group G4ID on 2006-09-16 15:11:08 as ** along with 1 group Genetics-of-Gambling
  • Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
    Genes Dev., Vol. 21, No. 6. (15 March 2007), pp. 708-718.
    by Julie Z Ni, Leslie Grate, John P Donohue, Christine Preston, Naomi Nobida, Georgeann O'Brien, Lily Shiue, Tyson A Clark, John E Blume, Manuel Ares
    posted to alternative-splicing nonsense-mediated-mrna-decay by dchughes to the group G4ID on 2007-03-19 11:44:20 as ** along with 1 group Genetics-of-Gambling
  • SR proteins: a foot on the exon before the transition from intron to exon definition
    Trends in Genetics, Vol. 23, No. 1. (January 2007), pp. 5-7.
    by Oren Ram, Gil Ast
    posted to alternative-splicing splicing sr-proteins by dchughes to the group G4ID on 2007-03-01 10:36:11 as ** along with 1 group Genetics-of-Gambling
  • Cellular signals modulate alternative splicing
    Journal of Biomedical Science, Vol. 14, No. 4. (16 July 2007), pp. 517-522.
    by Woan-Yuh Tarn
    posted to alternative-splicing by dchughes to the group G4ID on 2007-07-22 15:54:07 as ** along with 1 group Genetics-of-Gambling
  • Intron size in mammals: complexity comes to terms with economy
    Trends in Genetics, Vol. 23, No. 1. (January 2007), pp. 20-24.
    by Uberto Pozzoli, Giorgia Menozzi, Giacomo P Comi, Rachele Cagliani, Nereo Bresolin, Manuela Sironi
    posted to alternative-splicing intron-size by dchughes to the group G4ID on 2007-01-08 10:25:10 as ** along with 1 group Genetics-of-Gambling
  • Splicing and the Evolution of Proteins in Mammals
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e14.
    by Joanna L Parmley, Araxi O Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D Hurst
    posted to alternative-splicing evolution exonic-splicing-enhancer-elements splicing by dchughes to the group G4ID on 2007-02-14 13:00:38 as ** along with 7 people and 6 groups operon aalibes dpollard kehan stajich jwestbrook gileswl biodiversity_conservation Bioinformatics EisenLab King_Lab GrassBase Genetics-of-Gambling
  • Maps, Codes, and Sequence Elements: Can We Predict the Protein Output from an Alternatively Spliced Locus?
    Neuron, Vol. 52, No. 4. (22 November 2006), pp. 574-576.
    by Shalini Sharma, Douglas L Black
    posted to alternative-splicing by dchughes to the group G4ID on 2006-11-24 12:57:22 as ** along with 1 group Genetics-of-Gambling
  • Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms
    PNAS, Vol. 103, No. 22. (30 May 2006), pp. 8390-8395.
    by Pedro R Romero, Saima Zaidi, Ya Y Fang, Vladimir N Uversky, Predrag Radivojac, Christopher J Oldfield, Marc S Cortese, Megan Sickmeier, Tanguy Legall, Zoran Obradovic, Keith A Dunker
    posted to alternative-splicing by dchughes to the group G4ID on 2006-05-31 12:07:32 as ** along with 2 people and 2 groups eoghanharr stajich Genetics-of-Gambling Berkeley Mycology
  • The MicroRNA miR-124 Promotes Neuronal Differentiation by Triggering Brain-Specific Alternative Pre-mRNA Splicing
    Molecular Cell, Vol. 27, No. 3. (3 August 2007), pp. 435-448.
    by Eugene V Makeyev, Jiangwen Zhang, Monica A Carrasco, Tom Maniatis
    posted to mirna alternative-splicing by dchughes to the group G4ID on 2007-08-04 11:39:52 as ** along with 4 people and 2 groups andersbj sebastien_vigneau maralena bootsy microRNA Genetics-of-Gambling
  • The impact of alternative splicing in vivo: Mouse models show the way.
    RNA (11 June 2007)
    by Tarik Möröy, Florian Heyd
    posted to alternative-splicing by dchughes to the group G4ID on 2007-07-18 12:44:37 as ** along with 1 person and 1 group sebastien_vigneau Genetics-of-Gambling
  • Mammalian mRNA Splice-Isoform Selection Is Tightly Controlled
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1079-1087.
    by Jennifer L Chisa, David T Burke
    posted to alternative-splicing by dchughes to the group G4ID on 2007-07-26 17:00:10 as ** along with 1 group Genetics-of-Gambling
  • Micromanaging Alternative Splicing during Muscle Differentiation
    Developmental Cell, Vol. 12, No. 2. (February 2007), pp. 171-172.
    by Christopher S Bland, Thomas A Cooper
    posted to mirna alternative-splicing by dchughes to the group G4ID on 2007-02-06 10:41:45 as ** along with 1 person and 2 groups andersbj microRNA Genetics-of-Gambling
  • The connection between splicing and cancer
    J Cell Sci, Vol. 119, No. 13. (1 July 2006), pp. 2635-2641.
    by Anabella Srebrow, Alberto R Kornblihtt
    posted to alternative-splicing cancer by dchughes to the group G4ID on 2006-06-21 14:20:40 as ** along with 2 people and 1 group frohike srp33 Genetics-of-Gambling
  • Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements
    PLoS Genetics, Vol. 3, No. 5. (1 May 2007), e85.
    by Gene W Yeo, Eric L Nostrand, Tiffany Y Liang
    posted to alternative-splicing by dchughes to the group G4ID on 2007-07-28 10:12:58 as ** along with 1 person and 1 group mdimon Genetics-of-Gambling
  • The implications of alternative splicing in the ENCODE protein complement.
    Proc Natl Acad Sci U S A, Vol. 104, No. 13. (27 March 2007), pp. 5495-5500.
    by ML Tress, PL Martelli, A Frankish, GA Reeves, JJ Wesselink, C Yeats, PL Olason, M Albrecht, H Hegyi, A Giorgetti, D Raimondo, J Lagarde, RA Laskowski, G López, MI Sadowski, JD Watson, P Fariselli, I Rossi, A Nagy, W Kai, Z Størling, M Orsini, Y Assenov, H Blankenburg, C Huthmacher, F Ramírez, A Schlicker, F Denoeud, P Jones, S Kerrien, S Orchard, SE Antonarakis, A Reymond, E Birney, S Brunak, R Casadio, R Guigo, J Harrow, H Hermjakob, DT Jones, T Lengauer, C A Orengo, L Patthy, JM Thornton, A Tramontano, A Valencia
    posted to alternative-splicing by dchughes to the group G4ID on 2007-05-17 10:49:51 as ** along with 4 people and 3 groups stevanspringer Cortel winterschlaefer antonkratz Bioinformatics FAB-lab Genetics-of-Gambling
  • Exon Silencing by UAGG Motifs in Response to Neuronal Excitation
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e36.
    by Ping An, Paula J Grabowski
    posted to alternative-splicing neuron neuroscience splicing by dchughes to the group G4ID on 2007-02-14 13:03:27 as ** along with 1 group Genetics-of-Gambling
  • Oriented Scanning Is the Leading Mechanism Underlying 5′ Splice Site Selection in Mammals
    PLoS Genetics, Vol. 2, No. 9. (1 September 2006), e138.
    by Keren Borensztajn, Marie-Laure Sobrier, Philippe Duquesnoy, Anne-Marie Fischer, Jacqueline Tapon-Bretaudière, Serge Amselem
    posted to alternative-splicing splicing by dchughes to the group G4ID on 2006-10-08 12:11:43 as ** along with 1 person and 1 group raistrick Genetics-of-Gambling
  • Alternative splicing switches on the brain
    Nature Reviews Neuroscience, Vol. 8, No. 8., pp. 576-576.
    by Patrick Goymer
    posted to ptb alternative-splicing by dchughes to the group G4ID on 2007-07-22 16:11:50 as ** along with 1 group Genetics-of-Gambling
  • Characterization and prediction of alternative splice sites
    Gene, Vol. 366, No. 2. (1 February 2006), pp. 219-227.
    by Magnus Wang, Antonio Marin
    posted to alternative-splicing bioinformatics by dchughes to the group G4ID on 2006-02-15 12:47:13 as ** along with 1 person and 1 group GustavoLacerda Genetics-of-Gambling
  • Functional consequences of new exon acquisition in mammalian chromodomain Y-like (CDYL) genes
    Trends in Genetics, Vol. 23, No. 9. (September 2007), pp. 427-431.
    by Xin Li, Jing Liang, Haijing Yu, Bing Su, Chunjie Xiao, Yongfeng Shang, Wen Wang
    posted to exonisation alternative-splicing alternative-promoters by dchughes to the group G4ID on 2007-08-20 12:21:35 as ** along with 1 group Genetics-of-Gambling
  • Sing the Genome Electric: Excited Cells Adjust Their Splicing
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e55.
    by Manuel Ares
    posted to alternative-splicing neuron neuroscience by dchughes to the group G4ID on 2007-02-14 13:30:13 as ** along with 1 group Genetics-of-Gambling
  • Heritability of alternative splicing in the human genome
    Genome Res., Vol. 17, No. 8. (1 August 2007), pp. 1210-1218.
    by Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, David Serre, Harry Zuzan, Tyson A Clark, Anthony Schweitzer, Michelle K Staples, Hui Wang, John E Blume, Thomas J Hudson, Rob Sladek, Jacek Majewski
    posted to alternative-splicing by dchughes to the group G4ID on 2007-09-17 12:51:04 as ** along with 8 people and 2 groups xingxu msomel caseybrown nicholso jo_davies ramensky popgen jyuh Bioinformatics Genetics-of-Gambling
  • Alternative Splicing: New Insights from Global Analyses
    Cell, Vol. 126, No. 1. (14 July 2006), pp. 37-47.
    by Benjamin J Blencowe
    posted to alternative-splicing by dchughes to the group G4ID on 2006-07-16 11:55:27 as ** along with 5 people and 2 groups jfr saru jwestbrook mdimon cchand King_Lab Genetics-of-Gambling
  • An intronic sequence mutated in flexed-tail mice regulates splicing of Smad5
    Mammalian Genome, Vol. 18, No. 12. (December 2007), pp. 852-860.
    by Shailaja Hegde, Laurie Lenox, Andrew Lariviere, Prashanth Porayette, John Perry, Michele Yon, Robert Paulson
    posted to alternative-splicing intron splicing by dchughes on 2007-12-16 16:46:08 as **
  • Alternative splicing: current perspectives
    BioEssays, Vol. 30, No. 1. (2008), pp. 38-47.
    by Eddo Kim, Amir Goren, Gil Ast
    posted to alternative-splicing by dchughes on 2007-12-18 13:37:47 as ** along with 1 person balicea
  • Use of an exon-trapping vector for the evaluation of splice-site mutations
    Mammalian Genome, Vol. 18, No. 9. (2007), pp. 670-676.
    by Boris Schneider, Andrea Koppius, Reinhard Sedlmeier
    posted to alternative-splicing splicing by dchughes on 2007-11-08 09:51:18 as **
  • Alternative trans-splicing: a novel mode of pre-mRNA processing.
    Biol Cell, Vol. 98, No. 2. (February 2006), pp. 135-140.
    by T Horiuchi, T Aigaki
    posted to alternative-splicing splicing trans-splicing by dchughes on 2007-12-06 10:53:15 as ** along with 1 person rklancer
  • Conserved RNA secondary structures promote alternative splicing.
    RNA (New York, N.Y.), Vol. 14, No. 8. (August 2008), pp. 1463-1469.
    by PJ Shepard, KJ Hertel
    posted to alternative-splicing by dchughes on 2008-09-02 10:32:57 as **
  • Alternative splicing of Alu exons--two arms are better than one.
    Nucleic Acids Res (14 February 2008)
    by Nurit Gal-Mark, Schraga Schwartz, Gil Ast
    posted to alternative-splicing alu alu-exonisation retrotransposon by dchughes on 2008-03-06 12:29:04 as ** along with 1 person and 1 group paulcartwright BergmanLab
  • Genome-wide detection of alternative splicing in expressed sequences of human genes.
    Nucleic Acids Res, Vol. 29, No. 13. (1 July 2001), pp. 2850-2859.
    by B Modrek, A Resch, C Grasso, C Lee
    posted to alternative-splicing by dchughes on 2008-09-16 13:06:10 as ** along with 4 people and 1 group kaspermunch frohike raylim antonkratz Bioinformatics
  • Identification of two GTP-independent alternatively spliced forms of tissue transglutaminase in human leukocytes, vascular smooth muscle, and endothelial cells
    FASEB J., Vol. 21, No. 14. (1 December 2007), pp. 4131-4143.
    by Thung-S Lai, Yusha Liu, Weidong Li, Charles S Greenberg
    posted to alternative-splicing mir tg2 by dchughes on 2007-12-18 13:11:54 as **
  • Evolutionary impact of limited splicing fidelity in mammalian genes.
    Trends Genet, Vol. 23, No. 10. (October 2007), pp. 484-488.
    by C Zhang, AR Krainer, MQ Zhang
    posted to alternative-splicing splicing by dchughes on 2007-10-30 13:32:14 as ** along with 1 person bpcusack
  • Optimal spliced alignments of short sequence reads
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180.
    by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch
    posted to transcript software sequencing mapper alternative-splicing by cthachuk on 2008-09-10 23:22:00 as read along with 3 people caseybrown Ema Neeperando
  • Sircah: a tool for the detection and visualization of alternative transcripts
    Bioinformatics, Vol. 24, No. 17. (1 September 2008), pp. 1959-1960.
    by Eoghan D Harrington, Peer Bork
    posted to alternative-splicing analysis tool visualization by cthachuk on 2008-08-25 17:47:00 as **
  • The in vivo minigene approach to analyze tissue-specific splicing.
    Brain Res Brain Res Protoc, Vol. 4, No. 3. (December 1999), pp. 383-394.
    by O Stoss, P Stoilov, AM Hartmann, O Nayler, S Stamm
    posted to alternative-splicing expression minigene splicing by cassj on 2005-03-24 12:45:14 as **
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