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Ключевое слово biopax [11 articles]

Recent papers classified by the tag biopax.
  • PAX of mind for pathway researchers.
    Drug Discov Today, Vol. 10, No. 13. (1 July 2005), pp. 937-942.
    by JS Luciano
    posted to biopax data dt format pathway representation by wnpx on 2006-11-17 15:55:21 as ** along with 3 people balajis dullhunk lenov
  • Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX
    Bioinformatics, Vol. 21, No. 24. (15 December 2005), pp. 4401-4407.
    by Lena Strömbäck, Patrick Lambrix
    posted to biopax data dt format pathway psi-mi representation sbml by wnpx on 2007-10-17 19:19:55 as ** along with 3 people and 2 groups kuhn balajis dagmar dIEMoSIRIS compneur
  • Systematic reconstruction of TRANSPATH data into Cell System Markup Language
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Masao Nagasaki, Ayumu Saito, Chen Li, Euna Jeong, Satoru Miyano
    posted to biopax by JeremyZucker on 2008-07-31 20:13:56 as ** along with 2 people reyez bootsy
  • CO: A chemical ontology for identification of functional groups and semantic comparison of small molecules.
    FEBS Lett, Vol. 579, No. 21. (29 August 2005), pp. 4685-4691.
    by HJ Feldman, M Dumontier, S Ling, N Haider, CW Hogue
    posted to biopax metabolic-reconstruction semantic-web by JeremyZucker on 2007-10-30 19:31:58 as **** along with 1 person and 1 group kuhn MetabolicModeling
  • An efficient grid layout algorithm for biological networks utilizing various biological attributes
    BMC Bioinformatics, Vol. 8 (06 March 2007), 76.
    by Kaname Kojima, Masao Nagasaki, Euna Jeong, Mitsuru Kato, Satoru Miyano
    posted to biopax graph-layout by JeremyZucker on 2008-07-31 20:09:21 as **
  • e-Science and biological pathway semantics.
    BMC Bioinformatics, Vol. 8 Suppl 3 (2007)
    by JS Luciano, RD Stevens
    posted to biopax semantic-web by JeremyZucker on 2007-10-17 21:26:03 as ** along with 6 people jyuh dullhunk bootsy tral dansullivanblk alanrw
  • Biopathways representation and simulation on hybrid functional Petri net.
    In silico biology, Vol. 3, No. 3. (2003), pp. 389-404.
    by H Matsuno, Y Tanaka, H Aoshima, A Doi, M Matsui, S Miyano
    posted to biopax petri-net by JeremyZucker on 2008-07-31 20:14:49 as **
  • A versatile petri net based architecture for modeling and simulation of complex biological processes.
    Genome informatics. International Conference on Genome Informatics, Vol. 15, No. 1. (2004), pp. 180-197.
    by M Nagasaki, A Doi, H Matsuno, S Miyano
    posted to biopax petri-net by JeremyZucker on 2008-07-31 20:14:22 as **
  • A review of standards for data exchange within systems biology.
    Proteomics, Vol. 7, No. 6. (16 March 2007), pp. 857-867.
    by Lena Strömbäck, David Hall, Patrick Lambrix
    posted to standards sbml psimi dataintegration biopax by dagmar to the group compneur on 2007-04-27 07:29:54 as ***** along with 3 people and 1 group bootsy hpiwowar AlexanderPico dIEMoSIRIS
  • WikiPathways: Pathway Editing for the People
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e184.
    by Alexander R Pico, Thomas Kelder, Martijn P van Iersel, Kristina Hanspers, Bruce R Conklin, Chris Evelo
    posted to biopax gpml pathway sbml wiki by dullhunk on 2008-07-30 08:32:22 as ** along with 10 people and 2 groups cerami AlexanderPico thomaskelder iBartomeus renatomilani ajaymalik jarredmccaffrey laurianw amarois tharris ConklinLab behavior_flexibility
  • BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks
    Bioinformatics (16 November 2007), btm553.
    by Andrei Zinovyev, Eric Viara, Laurence Calzone, Emmanuel Barillot
    posted to biopax cytoscape visualization by dullhunk on 2008-03-25 10:56:11 as ** along with 5 people jyuh jfr grahamc sgoetz idonaldson
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