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Ключевое слово biophysics [363 articles]

Recent papers classified by the tag biophysics.
  • Biophysical basis of brain activity: implications for neuroimaging.
    Q Rev Biophys, Vol. 35, No. 3. (August 2002), pp. 287-325.
    by RG Shulman, F Hyder, DL Rothman
    posted to biophysics brain by xinian on 2006-10-08 03:58:51 as **
  • Bias-induced insulator-metal transition in organic electronics
    (1 Sep 2006)
    by JH Wei, Yijing Yan, SJ Xie, LM Mei
    posted to biophysics transport by wangsd on 2006-09-04 15:52:06 as **
  • Laws in Darwinian Evolutionary Theory
    (14 May 2006)
    by P Ao
    posted to biophysics by wangsd on 2006-05-17 09:01:25 as ** along with 1 person and 1 group livingthingdan livingthing
  • Model-free methods of analyzing domain motions in proteins from simulation: a comparison of normal mode analysis and molecular dynamics simulation of lysozyme.
    Proteins, Vol. 27, No. 3. (March 1997), pp. 425-437.
    by S Hayward, A Kitao, HJ Berendsen
    posted to biophysics collective-dynamics essential-dynamics molecular-dynamics by ttjoseph on 2006-08-18 06:31:09 as ***
  • Kinetics from Nonequilibrium Single-Molecule Pulling Experiments
    Biophys. J., Vol. 85, No. 1. (1 July 2003), pp. 5-15.
    by Gerhard Hummer, Attila Szabo
    posted to biophysics by ttjoseph on 2006-09-29 02:40:39 as ***
  • Can Principal Components Yield a Dimension Reduced Description of Protein Dynamics on Long Time Scales?
    J. Phys. Chem. B, Vol. 110, No. 45. (16 November 2006), pp. 22842-22852.
    by OF Lange, H Grubmuller
    posted to molecular-dynamics essential-dynamics biophysics by ttjoseph on 2007-01-18 16:44:01 as *** along with 1 person ffranca
  • A heuristic procedure for the detection of locally similar substructures of two equivalent structures.
    Protein Eng, Vol. 7, No. 3. (March 1994), pp. 331-333.
    by M Mezei
    posted to algorithms biophysics flexibility by ttjoseph on 2006-03-31 08:11:19 as read along with 1 person dimka
  • Exploring the Helix-Coil Transition via All-Atom Equilibrium Ensemble Simulations.
    Biophys J, Vol. 88, No. 4. (April 2005), pp. 2472-2493.
    by EJ Sorin, VS Pande
    posted to biophysics force-field molecular-dynamics by ttjoseph on 2006-04-03 15:34:45 as ** along with 2 people allmensch loison
  • From the Cover: Free energy reconstruction from nonequilibrium single-molecule pulling experiments
    PNAS, Vol. 98, No. 7. (27 March 2001), pp. 3658-3661.
    by Gerhard Hummer, Attila Szabo
    posted to biophysics free-energy molecular-dynamics by ttjoseph on 2006-09-29 16:03:20 as *** along with 3 people and 1 group cgguido dchen onufriev WeeksLab
  • Thermodynamic calculations in biological systems
    Biophysical Chemistry, Vol. In Press, Corrected Proof
    by Mario L Amzel, Xavier Siebert, Anthony Armstrong, German Pabon
    posted to biophysics molecular-dynamics by ttjoseph on 2006-09-29 15:59:20 as ** along with 5 people and 3 groups barry pansapiens shuns imouthesmp nknii structural_bioinformatics Bioinformatics TCR_Signaling
  • Biomechanics and biophysics of cancer cells.
    Acta Biomater, Vol. 3, No. 4. (July 2007), pp. 413-438.
    by S Suresh
    posted to biomechaniscs biophysics cancer mechanical properties review by tsjipko on 2008-03-04 15:18:38 as ****
  • Estimating intracellular calcium concentrations and buffering without wavelength ratioing.
    Biophys J, Vol. 78, No. 5. (May 2000), pp. 2655-2667.
    by M Maravall, ZF Mainen, BL Sabatini, K Svoboda
    posted to biophysics calcium imaging indicator neuroscience photon two by tmiya on 2006-06-15 20:54:28 as read along with 3 people batallah inbetweener winniew
  • The use of fura-2 for estimating ca buffers and ca fluxes
    Neuropharmacology, Vol. 34, No. 11. (November 1995), pp. 1423-1442.
    by E Neher
    posted to biophysics buffer calcium flux fura-2 by tmiya on 2006-06-21 14:14:35 as ***
  • Interplay of ion binding and attraction in DNA condensed by multivalent cations
    Nucl. Acids Res., Vol. 36, No. 2. (2 February 2008), pp. 501-510.
    by Brian A Todd, Donald C Rau
    posted to biophysics cations condensation dna force multivalent spectroscopy by skoch3 on 2008-04-28 20:51:56 as ***** along with 1 person and 2 groups sobolevnrm baker-group Koch_Lab
  • A micromachined DNA manipulation platform for the stretching and rotation of a single DNA molecule The preliminary results of the current paper were presented at the IEEE 17th International MEMS Conference (IEEE MEMS 2004), Maastricht, Netherlands, 25–29 Jan. 2004.
    Journal of Micromechanics and Microengineering, Vol. 15, No. 1. (2005), pp. 109-117.
    by Chi H Chiou, Gwo B Lee
    posted to beads biomems biophysics dna force magnetic mems microspheres single-molecule by skoch3 on 2007-02-14 06:59:54 as *** along with 1 group Koch_Lab
  • A Comparison of Step-Detection Methods: How Well Can You Do?
    Biophys. J., Vol. 94, No. 1. (1 January 2008), pp. 306-319.
    by Brian C Carter, Michael Vershinin, Steven P Gross
    posted to biophysics detection kinesin single-molecule step by skoch3 on 2008-01-02 23:49:05 as *** along with 2 people and 1 group samjlord melting moernerlab
  • Bending Dynamics of Fluctuating Biopolymers Probed by Automated High-Resolution Filament Tracking
    Biophys. J., Vol. 93, No. 1. (1 July 2007), pp. 346-359.
    by Clifford P Brangwynne, Gijsje H Koenderink, Ed Barry, Zvonimir Dogic, Frederick C Mackintosh, David A Weitz
    posted to actin biophysics dynamics image microtubules processing by skoch3 on 2007-06-11 05:36:28 as ** along with 2 people and 1 group glyg softsimu Koch_Lab
  • The Great Hunt For Extra Compliance
    Biophys. J., Vol. 93, No. 12. (15 December 2007), 4099.
    by Jan Liphardt
    posted to biophysics dna elasticity wlc by skoch3 on 2007-11-29 04:28:47 as **** along with 1 group Koch_Lab
  • Micromachined piconewton force sensor for biophysics investigations
    Applied Physics Letters, Vol. 89, No. 17. (2006)
    by Steven J Koch, Gayle E Thayer, Alex D Corwin, Maarten P de Boer
    posted to summit sensor microspheres micromachined mems magnetic force electromagnet biophysics biomems beads by skoch3 on 2007-02-03 09:24:25 as read along with 1 group Koch_Lab
  • Visualizing single DNA-bound proteins using DNA as a scanning probe
    Nature Methods, Vol. 4, No. 12. (11 November 2007), pp. 1031-1036.
    by Maarten C Noom, Bram van den Broek, Joost van Mameren, Gijs JL Wuite
    posted to biophysics dna dynamic force optical protein single-molecule spectroscopy tweezers by skoch3 on 2007-12-26 22:27:17 as ***** along with 1 group Koch_Lab
  • Pulling geometry-induced errors in single molecule force spectroscopy measurements.
    Biophys J, Vol. 92, No. 9. (1 May 2007)
    by C Ke, Y Jiang, M Rivera, RL Clark, PE Marszalek
    posted to biophysics dna force single-molecule spectroscopy by skoch3 on 2007-04-11 21:47:53 as *** along with 1 group Koch_Lab
  • Three-dimensional force microscope: A nanometric optical tracking and magnetic manipulation system for the biomedical sciences
    Review of Scientific Instruments, Vol. 76, No. 5. (2005)
    by JK Fisher, JR Cummings, KV Desai, L Vicci, B Wilde, K Keller, C Weigle, G Bishop, RM Taylor, Ii, CW Davis, RC Boucher, Timothy E O'Brien, R Superfine
    posted to 3d biophysics force magnetic microscope nanomanipulation spectroscopy by skoch3 on 2007-04-19 19:13:17 as ***** along with 1 group Koch_Lab
  • Two-Dimensional Manipulation and Orientation of Actin-Myosin Systems with Dielectrophoresis
    Nano Lett., Vol. 3, No. 4. (9 April 2003), pp. 431-437.
    by SB Asokan, L Jawerth, RL Carroll, RE Cheney, S Washburn, R Superfine
    posted to actin biophysics dielectrophoresis myosin by skoch3 on 2007-04-19 18:52:00 as **** along with 1 person and 1 group ianwong Koch_Lab
  • Temperature dependent properties of a kinesin-3 motor protein from Thermomyces lanuginosus
    Fungal Genetics and Biology, Vol. In Press, Accepted Manuscript
    by Susan B Rivera, Steven J Koch, Joseph M Bauer, Matthew J Edwards, George D Bachand
    posted to aggregation biochemistry biophysics kinesin motility thermophilic by skoch3 on 2007-02-23 21:47:27 as read along with 1 group Koch_Lab
  • B-S Transition in Short Oligonucleotides
    Biophys. J., Vol. 93, No. 7. (1 October 2007), pp. 2400-2409.
    by Julia Morfill, Ferdinand Kuhner, Kerstin Blank, Robert A Lugmaier, Julia Sedlmair, Hermann E Gaub
    posted to afm biophysics dna dynamic force overstretching spectroscopy by skoch3 on 2007-09-12 18:26:43 as **** along with 1 group Koch_Lab
  • Multi-Nanopore Force Spectroscopy for DNA Analysis
    Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1632-1637.
    by Carolina Tropini, Andre Marziali
    posted to biophysics dna force nanopore sensor single-molecule spectroscopy by skoch3 on 2007-02-20 05:46:22 as *** along with 1 group Koch_Lab
  • Visualization and Mechanical Manipulations of Individual Fibrin Fibers Suggest that Fiber Cross Section Has Fractal Dimension 1.3
    Biophys. J., Vol. 87, No. 6. (1 December 2004), pp. 4226-4236.
    by M Guthold, W Liu, B Stephens, ST Lord, RR Hantgan, DA Erie, RM Taylor, R Superfine
    posted to afm biophysics fibrin force nanomanipulation spectroscopy by skoch3 on 2007-04-19 19:01:52 as **** along with 1 group Koch_Lab
  • Predicting the rupture probabilities of molecular bonds in series.
    Biophys J, Vol. 93, No. 4. (15 August 2007), pp. 1215-1223.
    by G Neuert, CH Albrecht, HE Gaub
    posted to biophysics dna dynamic force sensor spectroscopy by skoch3 on 2007-09-25 10:29:25 as ***** along with 1 group Koch_Lab
  • Atomic Force Microscopy Imaging of SWI/SNF Action: Mapping the Nucleosome Remodeling and Sliding
    Biophys. J., Vol. 93, No. 2. (15 July 2007), pp. 566-578.
    by Fabien Montel, Emeline Fontaine, Philippe St-Jean, Martin Castelnovo, Cendrine Faivre-Moskalenko
    posted to afm biophysics chromatin mapping nucleosomes by skoch3 on 2007-06-26 06:14:06 as *** along with 1 group Koch_Lab
  • Single-Molecule Studies Reveal Dynamics of DNA Unwinding by the Ring-Shaped T7 Helicase
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1299-1309.
    by Daniel S Johnson, Lu Bai, Benjamin Y Smith, Smita S Patel, Michelle D Wang
    posted to biophysics dna helicase single-molecule unzipping by skoch3 on 2008-06-14 23:31:19 as read along with 1 group Koch_Lab
  • Opening rates of DNA hairpins: Experiment and model
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 1. (2007)
    by Jeungphill Hanne, Giovanni Zocchi, Nikolaos K Voulgarakis, Alan R Bishop, Kim
    posted to biophysics dna dynamic force motion particle pbd spectroscopy tethered unzipping by skoch3 on 2007-08-17 20:54:31 as read along with 1 group Koch_Lab
  • Nano-Scale Dynamic Recognition Imaging on Vascular Endothelial Cells
    Biophys. J., Vol. 93, No. 2. (15 July 2007), pp. L11-13.
    by Lilia A Chtcheglova, Jens Waschke, Linda Wildling, Detlev Drenckhahn, Peter Hinterdorfer
    posted to afm biophysics imaging recognition by skoch3 on 2007-06-26 05:57:48 as ** along with 1 person and 1 group bobturner Koch_Lab
  • Thin-foil magnetic force system for high-numerical-aperture microscopy
    Review of Scientific Instruments, Vol. 77, No. 2. (2006)
    by JK Fisher, J Cribb, KV Desai, L Vicci, B Wilde, K Keller, RM Taylor, Ii, J Haase, K Bloom, Timothy E O'Brien, R Superfine
    posted to biophysics force magnetic microfabricated pieces pole spectroscopy by skoch3 on 2007-04-19 19:09:28 as ***** along with 1 group Koch_Lab
  • Direct Measurement of Local Chromatin Fluidity Using Optical Trap Modulation Force Spectroscopy
    Biophys. J., Vol. 91, No. 12. (15 December 2006), pp. 4632-4637.
    by T Roopa, GV Shivashankar
    posted to biophysics chromatin force mammalian optical single-molecule tweezers by skoch3 on 2007-05-10 08:29:20 as ***** along with 1 group Koch_Lab
  • From the Cover: Mapping hydration dynamics around a protein surface.
    Proc Natl Acad Sci U S A, Vol. 104, No. 47. (20 November 2007), pp. 18461-18466.
    by L Zhang, L Wang, YT Kao, W Qiu, Y Yang, O Okobiah, D Zhong
    posted to biophysics dynamics hydration water by skoch3 on 2007-12-03 03:58:31 as *** along with 2 people and 2 groups sobolevnrm kjell Koch_Lab baker-group
  • Histone Octamer Instability under Single Molecule Experiment Conditions
    J. Biol. Chem., Vol. 280, No. 20. (20 May 2005), pp. 19958-19965.
    by Cyril Claudet, Dimitar Angelov, Philippe Bouvet, Stefan Dimitrov, Jan Bednar
    posted to biophysics chromatin native single-molecule by skoch3 on 2008-05-15 10:10:01 as ***** along with 1 group Koch_Lab
  • Stretching of Homopolymeric RNA Reveals Single-Stranded Helices and Base-Stacking
    Physical Review Letters, Vol. 98, No. 15. (2007)
    by Yeonee Seol, Gary M Skinner, Koen Visscher, Arnaud Buhot, Avraham Halperin
    posted to afm biophysics force rna single-molecule spectroscopy by skoch3 on 2007-06-19 18:45:56 as **** along with 1 person and 1 group awallin Koch_Lab
  • Elasticity of short DNA molecules: theory and experiment for contour lengths of 0.6-7 microm
    Biophys. J. (31 August 2007), biophysj.107.112995.
    by Yeonee Seol, Jinyu Li, Philip Nelson, Thomas T Perkins, MD Betterton
    posted to biophysics dna elasticity wlc by skoch3 on 2007-11-29 04:27:30 as **** along with 2 people and 1 group norris ssfeldman Koch_Lab
  • Analysis of Kinetics in Noisy Systems: Application to Single Molecule Tethered Particle Motion
    Biophys. J., Vol. 93, No. 1. (1 July 2007), pp. 21-36.
    by F Vanzi, L Sacconi, FS Pavone
    posted to biophysics motion particle single-molecule tethered theory by skoch3 on 2007-06-11 05:31:47 as ** along with 1 person and 1 group ssfeldman Koch_Lab
  • DNA looping kinetics analyzed using diffusive hidden markov model.
    Biophys J, Vol. 92, No. 8. (15 April 2007)
    by JF Beausang, C Zurla, C Manzo, D Dunlap, L Finzi, PC Nelson
    posted to beads biophysics brownian dna fluctuation hidden looping markov microspheres motion particle single-molecule tethered by skoch3 on 2007-03-29 21:08:22 as read along with 1 group Koch_Lab
  • Biophysics of Computation: Information Processing in Single Neurons (Computational Neuroscience)
    (28 October 2004)
    by Christof Koch
    posted to biophysics computational mathematical modeling by sidr on 2008-04-05 16:34:47 as **** along with 2 people Dax42 awooga
  • Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems
    (01 December 2001)
    by Peter Dayan, LF Abbott
    posted to biophysics computational mathematical modeling plasticity by sidr on 2008-04-05 15:52:24 as *** along with 8 people eldan bayesian dwf awooga rwilliamson bmcwilliams napvasconcelos robotact
  • DNAlive: A tool for the physical analysis of DNA at the genomic scale.
    Bioinformatics (Oxford, England) (9 June 2008)
    by J Ramon R Goñi, Carlos Fenollosa, Alberto Pérez, David Torrents, Modesto Orozco
    posted to bioinformatics biophysics chromatin by sebastien_vigneau on 2008-06-22 01:35:20 as ** along with 1 group BergmanLab
  • Ratiometric measurement and identification of single diffusing molecules
    Chemical Physics, Vol. 247, No. 1. (1 August 1999), pp. 85-106.
    by Maxime Dahan, Ashok A Deniz, Taekjip Ha, Daniel S Chemla, Peter G Schultz, Shimon Weiss
    posted to biophysics fret shot_noise single_molecule by seamus1089 on 2008-06-09 11:55:38 as *** along with 1 person yusdi
  • Mathematical Biophysics of the Central Nervous System (Mathematical biophysics monograph series)
    by Alston S Householder, Herbert D Landahl
    posted to biomathematics biophysics mathematical-biophysics nervous-systems neuroscience by Scis0000002 on 2008-08-20 12:13:33 as **
  • Towards a Hierarchical Model of Consciousness, Intelligence, Mind and Body
    ArXiv Computer Science e-prints (November 2005)
    by Prashant
    posted to biophysics hierarchy by scis0000001 on 2007-04-12 07:55:01 as **
  • Econophysics: Can physicists contribute to the science of economics?
    by HE Stanley, LAN Amaral, D Canning, P Gopikrishnan, Y Lee, Y Liu
    posted to biology biophysics economics econophysics physics by scis0000001 on 2007-03-20 14:10:02 as ** along with 1 person Alelima
  • Category Theory and Higher Dimensional Algebra: potential descriptive tools in neuroscience
    ArXiv Mathematics e-prints (June 2003)
    by R Brown, T Porter
    posted to biophysics category-theory higher-dimensional-algebra higher-dimensional-category-theory memory-evolutive-system neuroscience by scis0000001 on 2007-04-12 07:51:50 as ** along with 1 person jrw
  • Low Force Decelerates L-selectin Dissociation from P-selectin Glycoprotein Ligand-1 and Endoglycan
    J. Biol. Chem., Vol. 279, No. 3. (16 January 2004), pp. 2291-2298.
    by Krishna K Sarangapani, Tadayuki Yago, Arkadiusz G Klopocki, Michael B Lawrence, Claudia B Fieger, Steven D Rosen, Rodger P Mcever, Cheng Zhu
    posted to biophysics by schaffner364 on 2008-06-03 00:56:58 as *****
  • Fluorescent Biomembrane Probe for Ratiometric Detection of Apoptosis
    J. Am. Chem. Soc., Vol. 129, No. 7. (21 February 2007), pp. 2187-2193.
    by VV Shynkar, AS Klymchenko, C Kunzelmann, G Duportail, CD Muller, AP Demchenko, JM Freyssinet, Y Mely
    posted to biophysics dual-emission esipt readout by samjlord on 2007-02-28 00:38:45 as * along with 1 group moernerlab
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