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Ключевое слово cis_regulatory_evolution [59 articles]

Recent papers classified by the tag cis_regulatory_evolution.
  • Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 703-714.
    by ET Dermitzakis, CM Bergman, AG Clark
  • The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans
    Nature Genetics, Vol. 37, No. 5. (24 April 2005), pp. 544-548.
    by Dee R Denver, Krystalynne Morris, Todd T Streelman, Stuart K Kim, Michael Lynch, Kelley K Thomas
  • Evolution of cis-regulatory sequence and function in Diptera
    Heredity, Vol. aop, No. current.
    by PJ Wittkopp,
  • Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
    Nature, Vol. 440, No. 7087., pp. 1050-1053.
    by Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, Victoria A Kassner, Thomas M Williams, Shu-Dan Yeh, John R True, Sean B Carroll
  • Possibility of extensive neutral evolution under stabilizing selection with special reference to nonrandom usage of synonymous codons.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 78, No. 9. (September 1981), pp. 5773-5777.
    by M Kimura
    posted to cis_regulatory_evolution population_genetics_modeling by emptyhb on 2008-05-01 00:22:32 as **
  • The Evolution of Transcriptional Regulation in Eukaryotes
    Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419.
    by Gregory A Wray, Matthew W Hahn, Ehab Abouheif, James P Balhoff, Margaret Pizer, Matthew V Rockman, Laura A Romano
  • Large-scale turnover of functional transcription factor binding sites in Drosophila.
    PLoS Comput Biol, Vol. 2, No. 10. (October 2006)
    by AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen
  • Divergence of Hoxc8 early enhancer parallels diverged axial morphologies between mammals and fishes.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 26. (23 December 2003), pp. 15666-15669.
    by S Anand, WC Wang, DR Powell, SA Bolanowski, J Zhang, C Ledje, AB Pawashe, CT Amemiya, CS Shashikant
    posted to cis_regulatory_evolution function_study by emptyhb on 2008-04-14 05:35:04 as **
  • Sequence turnover and tandem repeats in cis-regulatory modules in drosophila.
    Mol Biol Evol, Vol. 22, No. 4. (April 2005), pp. 874-885.
    by S Sinha, ED Siggia
  • Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
    Genome Res, Vol. 15, No. 1. (January 2005), pp. 1-18.
  • An evolutionary constraint: Strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules
    Proceedings of the National Academy of Sciences, Vol. 102, No. 33. (16 August 2005), pp. 11769-11774.
    by Andrew R Cameron, Suk H Chow, Kevin Berney, Tsz-Yeung Chiu, Qiu-Autumn Yuan, Alexander Kramer, Argelia Helguero, Andrew Ransick, Mirong Yun, Eric H Davidson
  • The evolutionary significance of cis-regulatory mutations
    Nature Reviews Genetics, Vol. 8, No. 3., pp. 206-216.
    by Gregory A Wray
  • Position specific variation in the rate of evolution in transcription factor binding sites.
    BMC Evol Biol, Vol. 3, No. 1. (28 August 2003)
    by AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
  • Coordination of a Transcriptional Switch by HMGI(Y) Acetylation
    Science, Vol. 293, No. 5532. (10 August 2001), pp. 1133-1136.
    by Nikhil Munshi, Theodora Agalioti, Stavros Lomvardas, Menie Merika, Guoying Chen, Dimitris Thanos
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
  • Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage
    Science, Vol. 309, No. 5736. (05 August 2005), pp. 938-940.
    by Jan Ihmels, Sven Bergmann, Maryam Gerami-Nejad, Itai Yanai, Mark Mcclellan, Judith Berman, Naama Barkai
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
  • Evolution of alternative transcriptional circuits with identical logic
    Nature, Vol. 443, No. 7110. (2006), pp. 415-420.
    by Annie E Tsong, Brian B Tuch, Hao Li, Alexander D Johnson
  • Shadow Enhancers as a Source of Evolutionary Novelty
    Science, Vol. 321, No. 5894. (5 September 2008), 1314.
    by Joung-Woo Hong, David A Hendrix, Michael S Levine
  • Molecular mechanisms of selector gene function and evolution
    Current Opinion in Genetics & Development, Vol. 12, No. 5. (1 October 2002), pp. 592-600.
    by Richard S Mann, Sean B Carroll
    posted to cis_regulatory_evolution drosophila review by emptyhb on 2008-04-01 06:35:56 as **
  • Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila.
    Nature, Vol. 433, No. 7025. (3 February 2005), pp. 481-487.
  • Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
    BMC Bioinformatics, Vol. 7 (14 August 2006), 376.
    by Daniel A Pollard, Alan M Moses, Venky N Iyer, Michael B Eisen
  • Morphological evolution through multiple cis-regulatory mutations at a single gene
    Nature (15 July 2007)
    by Alistair P Mcgregor, Virginie Orgogozo, Isabelle Delon, Jennifer Zanet, Dayalan G Srinivasan, François Payre, David L Stern
  • Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos.
    Dev Biol (13 February 2008)
    by Thomas Gregor, Alistair PP Mcgregor, Eric FF Wieschaus
  • cis-Regulatory Changes in Kit Ligand Expression and Parallel Evolution of Pigmentation in Sticklebacks and Humans
    Cell, Vol. 131, No. 6. (14 December 2007), pp. 1179-1189.
    by Craig T Miller, Sandra Beleza, Alex A Pollen, Dolph Schluter, Rick A Kittles, Mark D Shriver, David M Kingsley
    posted to cis_regulatory_evolution phenotype by emptyhb on 2008-01-01 23:55:54 as **
  • Rationalization of gene regulation by a eukaryotic transcription factor: calculation of regulatory region occupancy from predicted binding affinities.
    Journal of molecular biology, Vol. 323, No. 1. (11 October 2002), pp. 1-8.
    by X Liu, ND Clarke
    posted to cis_regulatory_evolution dna-protein_interaction by emptyhb on 2008-08-11 21:13:28 as **
  • Frequent Gain and Loss of Functional Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e99.
    by Scott W Doniger, Justin C Fay
  • Colloquium Papers: Emerging principles of regulatory evolution.
    Proc Natl Acad Sci U S A, Vol. 104 Suppl 1 (15 May 2007), pp. 8605-8612.
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
  • Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
    Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560.
    by Christopher D Brown, David S Johnson, Arend Sidow
  • Functional Analysis of Repressor Binding Sites in the iab-2 Regulatory Region of the abdominal-A Homeotic Gene
    Developmental Biology, Vol. 218, No. 1. (1 February 2000), pp. 38-52.
    by Mary J Shimell, Aidan J Peterson, John Burr, Jeffrey A Simon, Michael B O'Connor
  • Human-Specific Gain of Function in a Developmental Enhancer
    Science, Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350.
    by Shyam Prabhakar, Axel Visel, Jennifer A Akiyama, Malak Shoukry, Keith D Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R Fitzpatrick, Veena Afzal, Len A Pennacchio, Edward M Rubin, James P Noonan
  • The evolution of transcription-initiation sites.
    Mol Biol Evol, Vol. 22, No. 4. (April 2005), pp. 1137-1146.
    by M Lynch, DG Scofield, X Hong
  • Evidence for widespread degradation of gene control regions in hominid genomes.
    PLoS Biol, Vol. 3, No. 2. (February 2005)
  • Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes.
    Mol Biol Evol, Vol. 21, No. 2. (February 2004), pp. 348-363.
  • Evolutionary dynamics of the enhancer region of even-skipped in Drosophila.
    Mol Biol Evol, Vol. 12, No. 6. (November 1995), pp. 1002-1011.
    by MZ Ludwig, M Kreitman
  • Species-Specific Transcription in Mice Carrying Human Chromosome 21
    Science (11 September 2008), 1160930.
    by Michael D Wilson, Nuno L Barbosa-Morais, Dominic Schmidt, Caitlin M Conboy, Lesley Vanes, Victor L Tybulewicz, Elizabeth M Fisher, Simon Tavare, Duncan T Odom
  • Two or Four Bristles: Functional Evolution of an Enhancer of scute in Drosophilidae
    PLoS Biology, Vol. 4, No. 12. (1 November 2006), e386.
    by Sylvain Marcellini, Pat Simpson
  • notes Conservation of regulatory elements between two species of Drosophila.
    BMC Bioinformatics, Vol. 4 (20 November 2003)
    by E Emberly, N Rajewsky, ED Siggia
  • Genomic Inferences of the cis-Regulatory Nucleotide Polymorphisms Underlying Gene Expression Differences between Drosophila melanogaster Mating Races.
    Mol Biol Evol (5 June 2006)
    by Naoki Osada, Michael H H Kohn, Chung-I I Wu
  • A Test of the Null Model for 5' UTR Evolution Based on GC Content
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 801-804.
    by Max Reuter, Jan Engelstadter, Pierre Fontanillas, Laurence D Hurst
    posted to cis_regulatory_evolution by emptyhb on 2008-06-04 00:33:22 as ** along with 1 person djkt
  • notes Comparative genomics at the vertebrate extremes.
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 456-465.
    by D Boffelli, MA Nobrega, EM Rubin
  • Evidence for stabilizing selection in a eukaryotic enhancer element
    Nature, Vol. 403, No. 6769. (3 February 2000), pp. 564-567.
    by Michael Z Ludwig, Casey Bergman, Nipam H Patel, Martin Kreitman
  • notes Evolutionary analysis of the cis-regulatory region of the spicule matrix gene SM50 in strongylocentrotid sea urchins.
    Developmental biology, Vol. 315, No. 2. (15 March 2008), pp. 567-578.
    by J Walters, E Binkley, R Haygood, LA Romano
  • Close sequence comparisons are sufficient to identify human cis-regulatory elements.
    Genome Res (12 June 2006)
    by Shyam Prabhakar, Francis Poulin, Malak Shoukry, Veena Afzal, Edward M M Rubin, Olivier Couronne, Len A A Pennacchio
  • The effects of selection against spurious transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 6. (June 2003), pp. 901-906.
    by MW Hahn, JE Stajich, GA Wray
  • Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence
    PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e29.
    by Dirk A Kleinjan, Ruth M Bancewicz, Philippe Gautier, Ralf Dahm, Helia B Schonthaler, Giuseppe Damante, Anne Seawright, Ann M Hever, Patricia L Yeyati, Veronica van Heyningen, Pedro Coutinho
  • A position-dependent organisation of retinoid response elements is conserved in the vertebrate Hox clusters.
    Trends in genetics : TIG, Vol. 19, No. 9. (September 2003), pp. 476-479.
    posted to cis_regulatory_evolution by emptyhb on 2008-04-14 05:43:34 as **
  • Evolution at two levels in humans and chimpanzees.
    Science, Vol. 188, No. 4184. (11 April 1975), pp. 107-116.
    by MC King, AC Wilson
  • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.
    Development, Vol. 125, No. 5. (March 1998), pp. 949-958.
    by MZ Ludwig, NH Patel, M Kreitman
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