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Ключевое слово co-expression [41 articles]

Recent papers classified by the tag co-expression.
  • A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.
    J Comput Biol, Vol. 9, No. 2. (2002), pp. 447-464.
    by G Thijs, K Marchal, M Lescot, S Rombauts, B De Moor, P Rouzé, Y Moreau
    posted to motif expression co-expression by xwbcn on 2008-09-23 10:57:54 as **
  • Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.
    Science, Vol. 309, No. 5742. (16 September 2005), pp. 1850-1854.
    by P Khaitovich, I Hellmann, W Enard, K Nowick, M Leinweber, H Franz, G Weiss, M Lachmann, S Pääbo
    posted to transcriptome mammal human comparative_study co-expression by xwbcn on 2008-09-22 02:29:15 as ** along with 8 people and 2 groups balicea madhadron nickluscombe hdopazo djkt mikaelhuss JeffR100 usagi-kirin EBI-regulation BioinfoCIPF
  • Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks.
    BMC Genomics, Vol. 7 (2006)
    by MR Carlson, B Zhang, Z Fang, PS Mischel, S Horvath, SF Nelson
    posted to co-expression networks-reconstruction yeast by xwbcn on 2008-05-25 08:17:51 as ** along with 2 people and 1 group jeremymiller kengg GeschwindLab
  • CoXpress: differential co-expression in gene expression data
    BMC Bioinformatics, Vol. 7 (20 November 2006), 509.
    by Michael Watson
    posted to affymetrix co-expression microarray networks software statistics by waszak on 2007-11-13 21:28:58 as ***** along with 5 people jfr dquest shigepong dps gabe_rosser
  • Co-expression of signaling proteins improves robustness of the bacterial chemotaxis pathway.
    J Biotechnol, Vol. 129, No. 2. (30 April 2007), pp. 173-180.
    by L Løvdok, M Kollmann, V Sourjik
    posted to chemotaxis co-expression robustness by vladimirov on 2008-03-14 12:49:22 as **
  • Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes.
    Genomics, Vol. 91, No. 3. (March 2008), pp. 243-248.
    by P Michalak
    posted to review coregulation co-expression by pengchy on 2008-10-09 04:27:19 as ** along with 2 people kengg alhufton
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
    posted to network module conserved_module co-expression by pengchy on 2008-10-09 03:30:26 as ** along with 18 people and 7 groups nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
  • A general framework for weighted gene co-expression network analysis.
    Stat Appl Genet Mol Biol, Vol. 4, No. 1. (2005)
    by B Zhang, S Horvath
    posted to network co-expression by pengchy on 2008-10-09 08:29:51 as ** along with 4 people and 1 group kengg jeremymiller natstreet jo_davies GeschwindLab
  • Conservation and evolution of gene coexpression networks in human and chimpanzee brains
    PNAS, Vol. 103, No. 47. (21 November 2006), pp. 17973-17978.
    by Michael C Oldham, Steve Horvath, Daniel H Geschwind
    posted to network human evolution conservation co-expression by pengchy on 2008-10-09 05:54:19 as ** along with 8 people and 2 groups balicea adepace kengg EsepBib jeremymiller cckan nosada17 giovanni EisenLab GeschwindLab
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to microarray human co-expression by pengchy on 2008-10-08 01:49:47 as ** along with 14 people and 2 groups jiny maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur jo_davies nedwards dragonrez GeschwindLab Indigene
  • Cross-species analysis of biological networks by Bayesian alignment.
    Proc Natl Acad Sci U S A, Vol. 103, No. 29. (18 July 2006), pp. 10967-10972.
    by J Berg, M Lässig
    posted to network evolution cross-species co-expression bayes by pengchy on 2008-10-09 07:08:30 as ** along with 4 people and 1 group jeremymiller jyuh adepace bpcusack EisenLab
  • Employing conservation of co-expression to improve functional inference
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Carsten Daub, Erik Sonnhammer
    posted to functional_inference conservation co-expression by pengchy on 2008-10-05 08:23:35 as ** along with 5 people ptrobajo natstreet lptolik klo barriot
  • Geometric Interpretation of Gene Coexpression Network Analysis
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000117.
    by Steve Horvath, Jun Dong
    posted to network co-expression analysis by pengchy on 2008-10-09 09:06:53 as ** along with 12 people nolodie druvus aramesh2 kengg roys Ema tmmurali Borelli Totobox AbnerCYH davidchavalarias caseybrown
  • Cluster analysis and display of genome-wide expression patterns.
    Proc Natl Acad Sci U S A, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868.
    by MB Eisen, PT Spellman, PO Brown, D Botstein
    posted to co-expression by kintoki on 2008-03-04 03:01:47 as ** along with 21 people and 3 groups macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis nuke2005 lyongu maryee wnpx nirfriedman dquest karfunkel dps jo_davies tvdbulck bozdagd roys flavio48 kdl Bioinformatics BUiGEM
  • von Hippel Lindau binding protein 1-mediated degradation of integrase affects HIV-1 gene expression at a postintegration step.
    Proc Natl Acad Sci U S A, Vol. 104, No. 34. (21 August 2007), pp. 13615-13620.
    by A Mousnier, N Kubat, A Massias-Simon, E Ségéral, JC Rain, R Benarous, S Emiliani, C Dargemont
    posted to co-expression by kintoki on 2008-03-18 04:20:41 as **
  • A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans
    Nature Genetics, Vol. 40, No. 2. (27 January 2008), pp. 181-188.
    by Insuk Lee, Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G Fraser, Edward M Marcotte
    posted to co-expression by kintoki on 2008-03-27 09:29:12 as ** along with 9 people and 1 group tharris jyuh tmmurali balicea capitall roys jiny meiklej jfr C. elegans / WormBase
  • Relating whole-genome expression data with protein-protein interactions.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46.
    by R Jansen, D Greenbaum, M Gerstein
    posted to co-expression by kintoki on 2008-03-04 03:05:27 as ** along with 8 people gurkanbebek gespim grahamc cjeans iris_2001 paolomarcatili nedwards carlk
  • A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae.
    Nucleic Acids Res, Vol. 29, No. 17. (1 September 2001), pp. 3513-3519.
    by A Grigoriev
    posted to co-expression by kintoki on 2008-03-04 03:04:27 as ** along with 2 people gurkanbebek tmmurali
  • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 482-486.
    by H Ge, Z Liu, GM Church, M Vidal
    posted to co-expression by kintoki on 2008-03-04 03:03:24 as ** along with 10 people and 1 group BioGeek lfriedl wnpx mmt gespim bluto ruvido grahamc roys paolomarcatili kdl
  • iVici: Interrelational Visualization and Correlation Interface.
    Genome Biol, Vol. 6, No. 13. (2005)
    by K Tarassov, SW Michnick
    posted to software co-expression by jfr on 2007-01-10 10:55:40 as *
  • Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms
    PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e89.
    by Brynn H Voy, Jon A Scharff, Andy D Perkins, Arnold M Saxton, Bhavesh Borate, Elissa J Chesler, Lisa K Branstetter, Michael A Langston
    posted to systems_biology radiation methodology co-expression by jfr on 2007-01-10 10:44:01 as read along with 2 people jiny wnpx
  • Topological and functional discovery in a gene coexpression meta-network of gastric cancer.
    Cancer Res, Vol. 66, No. 1. (1 January 2006), pp. 232-241.
    by A Aggarwal, DL Guo, Y Hoshida, ST Yuen, KM Chu, S So, A Boussioutas, X Chen, D Bowtell, H Aburatani, SY Leung, P Tan
    posted to co-expression by jfr on 2006-12-15 16:26:03 as ** along with 1 person kengg
  • Prediction of human disease genes by human-mouse conserved coexpression analysis.
    PLoS computational biology, Vol. 4, No. 3. (March 2008)
    by U Ala, RM Piro, E Grassi, C Damasco, L Silengo, M Oti, P Provero, F Di Cunto
    posted to co-expression by jfr on 2008-05-16 10:25:50 as ** along with 3 people ptrobajo jyuh wenhui
  • Utility of correlation measures in analysis of gene expression.
    NeuroRx, Vol. 3, No. 3. (July 2006), pp. 384-395.
    by A Almudevar, LB Klebanov, X Qiu, P Salzman, AY Yakovlev
    posted to co-expression by jfr on 2007-01-10 10:15:06 as *** along with 1 person heliopais
  • Analysis of promoter regions of co-expressed genes identified by microarray analysis
    BMC Bioinformatics, Vol. 7 (17 August 2006), 384.
    by Srinivas Veerla, Mattias Hoglund
    posted to regulation co-expression by jfr on 2007-01-10 14:01:35 as ** along with 5 people and 1 group gpalidwor giovanni SeungjoonOh heliopais nuin GeschwindLab
  • Identification of the proliferation/differentiation switch in the cellular network of multicellular organisms.
    PLoS Comput Biol, Vol. 2, No. 11. (24 November 2006)
    by K Xia, H Xue, D Dong, S Zhu, J Wang, Q Zhang, L Hou, H Chen, R Tao, Z Huang, Z Fu, YG Chen, JD Han
    posted to co-expression genomics network proliferation systems_biology by jfr on 2007-06-08 17:13:37 as *** along with 1 person and 1 group tmmurali Bioinformatics
  • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes.
    RNA, Vol. 11, No. 3. (March 2005), pp. 241-247.
    by S Baskerville, DP Bartel
    posted to co-expression mirna by jfr on 2008-04-21 09:09:39 as read along with 5 people and 1 group mtagaya ealloza lp2 heliopais maralena microRNA
  • Correlation test to assess low-level processing of high-density oligonucleotide microarray data.
    BMC Bioinformatics, Vol. 6 (2005)
    by A Ploner, LD Miller, P Hall, J Bergh, Y Pawitan
    posted to affy bioinformatics co-expression low_level by jfr on 2007-01-09 10:26:44 as *** along with 2 people ghattem giovenko
  • Differential coexpression analysis using microarray data and its application to human cancer
    Bioinformatics, Vol. 21, No. 24. (15 December 2005), pp. 4348-4355.
    by Jung K Choi, Ungsik Yu, Ook J Yoo, Sangsoo Kim
    posted to co-expression by jfr on 2007-01-10 12:04:21 as **** along with 2 people dragonrez gabe_rosser
  • Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
    BMC Bioinformatics, Vol. 7 (02 June 2006), 276.
    by Michal J Okoniewski, Crispin J Miller
    posted to co-expression low_level microarray_technology by jfr on 2006-12-15 16:50:45 as ** along with 4 people dquest medmhw heliopais bertelsen
  • Genome-wide co-expression based prediction of differential expressions.
    Bioinformatics (15 November 2007)
    by Yinglei Lai
    posted to microarray_analysis feature_selection co-expression by jfr on 2008-09-03 11:13:53 as read along with 4 people and 1 group jyuh shigepong aubinhon gongScience Integrative_biology_behavior
  • Eigengene networks for studying the relationships between co-expression modules
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Peter Langfelder, Steve Horvath
    posted to co-expression network software by jfr on 2008-05-04 22:58:45 as ** along with 1 person AlexanderPico
  • Clusters of Co-expressed Genes in Mammalian Genomes Are Conserved by Natural Selection
    Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 767-775.
    by Gregory AC Singer, Andrew T Lloyd, Lukasz B Huminiecki, Kenneth H Wolfe
    posted to co-expression by JeffR100 on 2006-12-13 20:29:01 as ** along with 2 people jeremymiller Garamonfok
  • Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans.
    Nature, Vol. 418, No. 6901. (29 August 2002), pp. 975-979.
    by PJ Roy, JM Stuart, J Lund, SK Kim
    posted to co-expression by JeffR100 on 2006-12-13 20:31:10 as ** along with 2 people and 1 group tharris tardigrade C. elegans / WormBase
  • Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues
    PNAS, Vol. 102, No. 24. (14 June 2005), pp. 8621-8626.
    by T Mijalski, A Harder, T Halder, M Kersten, M Horsch, TM Strom, HV Liebscher, F Lottspeich, Hrabe M de Angelis, J Beckers
    posted to co-expression by JeffR100 on 2006-12-13 20:26:44 as ** along with 1 person kengg
  • A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression.
    Nat Genet, Vol. 26, No. 2. (October 2000), pp. 183-186.
    by BA Cohen, RD Mitra, JD Hughes, GM Church
    posted to co-expression by JeffR100 on 2006-12-13 20:30:23 as ** along with 1 person jpoyatos
  • Regulation of adjacent yeast genes.
    Trends Genet, Vol. 16, No. 3. (March 2000), pp. 109-111.
    by S Kruglyak, H Tang
    posted to co-expression by JeffR100 on 2006-12-13 20:28:53 as ** along with 1 person jpoyatos
  • A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Arun K Ramani, Zhihua Li, Traver G Hart, Mark W Carlson, Daniel R Boutz, Edward M Marcotte
    posted to co-expression human interactions prediction protein-protein by grahamc on 2008-05-28 02:49:05 as *** along with 8 people and 1 group jeremymiller tmmurali biomcgary phoenixzxl zwang giovanni ardalby ptrobajo OPIG
  • Quantifying the relationship between co-expression, co-regulation and gene function.
    BMC Bioinformatics, Vol. 5 (25 February 2004)
    by DJ Allocco, IS Kohane, AJ Butte
    posted to co-expression co-regulation microarray by gpalidwor on 2006-10-23 02:13:31 as *** along with 1 person maryee
  • An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse.
    BMC Bioinformatics, Vol. 7, No. 1. (26 January 2006)
    by Ryung S Kim, Hongkai Ji, Wing H Wong
    posted to co-expression co-regulation by gpalidwor on 2006-10-23 02:14:36 as ** along with 3 people tuck troels_marstrand minostro
  • Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data.
    Brief Bioinform, Vol. 6, No. 4. (December 2005), pp. 331-343.
    by PC Boutros, AB Okey
    posted to annotation biology clustering co-expression co-regulation microarray proteomics review by bertelsen on 2008-06-10 20:41:00 as **** along with 8 people jfr metamerist tabu samal srfairclough akastrin xili03 renatomilani
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