Регистрация | Вход в службу | FAQ      [?] 

Ключевое слово coarse-graining [88 articles]

Recent papers classified by the tag coarse-graining.
  • Coarse-Graining in Polymer Simulation: From the Atomistic to the Mesoscopic Scale and Back
    ChemPhysChem, Vol. 3, No. 9. (2002), pp. 754-769.
    by Florian Müller-Plathe
    posted to coarse-graining simulation by ttjoseph on 2007-02-28 22:55:38 as ** along with 1 person kaz229
  • Coarse grain models and the computer simulation of soft materials
    Journal of Physics: Condensed Matter, Vol. 16, No. 15. (2004), pp. R481-R512.
    by Steve O Nielsen, Carlos F Lopez, Goundla Srinivas, Michael L Klein
    posted to coarse-graining by softsimu on 2008-02-08 17:44:08 as ** along with 2 people kaz229 RamuAnandakrishnan
  • Aggregation and vesiculation of membrane proteins by curvature-mediated interactions
    Nature, Vol. 447, No. 7143., pp. 461-464.
    by Benedict J Reynwar, Gregoria Illya, Vagelis A Harmandaris, Martin M Müller, Kurt Kremer, Markus Deserno
    posted to coarse-graining vesicles by softsimu on 2008-03-18 17:51:29 as ** along with 1 person choonpeng
  • Polymorphic Phase Behavior of Cardiolipin Derivatives Studied by Coarse-Grained Molecular Dynamics
    J. Phys. Chem. B, Vol. 111, No. 25. (28 June 2007), pp. 7194-7200.
    by M Dahlberg
    posted to cardiolipin coarse-graining by softsimu on 2008-01-28 15:00:14 as **
  • Coarse-grained model for phospholipid/cholesterol bilayer employing inverse Monte Carlo with thermodynamic constraints
    J Chem Phys, Vol. 126, No. 7. (2007), 075101.
    by T Murtola, E Falck, M Karttunen, I Vattulainen
    posted to cholesterol coarse-graining imc membranes monte-carlo by softsimu on 2007-12-12 14:20:41 as **
  • Coarse-grained transmembrane proteins: hydrophobic matching, aggregation, and their effect on fusion.
    J Phys Chem B, Vol. 110, No. 27. (13 July 2006), pp. 13614-13623.
    by AF Smeijers, K Pieterse, AJ Markvoort, PA Hilbers
    posted to coarse-graining proteins by softsimu on 2008-01-24 00:55:25 as **
  • Phase behavior of monomeric mixtures and polymer solutions with soft interaction potentials
    The Journal of Chemical Physics, Vol. 114, No. 17. (2001), pp. 7644-7654.
    by CM Wijmans, B Smit, RD Groot
    posted to coarse-graining dpd polymers by softsimu on 2008-02-22 19:35:34 as **
  • Thermodynamically Admissible Form for Discrete Hydrodynamics
    Physical Review Letters, Vol. 83, No. 22. (29 November 1999), 4542.
    by Pep Español, Mar Serrano, Hans C Öttinger
    posted to coarse-graining generic by softsimu on 2008-06-27 21:44:04 as **
  • Multiscale Monte Carlo Algorithm for Simple Fluids
    Physical Review Letters, Vol. 97, No. 19. (2006)
    by AC Maggs
    posted to coarse-graining electrostatics by softsimu on 2008-01-21 22:18:37 as **
  • Coarse Graining of Nonbonded Degrees of Freedom
    Physical Review Letters, Vol. 98, No. 26. (2007), 267801.
    by H Bock, KE Gubbins, SHL Klapp
    posted to coarse-graining by softsimu on 2007-12-12 03:50:41 as **
  • Coarse-Grained Molecular Dynamics Simulations of a Rotating Bacterial Flagellum.
    Biophys J (22 September 2006)
    by Anton Arkhipov, Peter L L Freddolino, Katsumi Imada, Keiichi Namba, Klaus Schulten
    posted to coarse-graining by softsimu on 2008-03-18 17:37:44 as ** along with 1 person choonpeng
  • Implicit solvent simulation models for biomembranes
    European Biophysics Journal, Vol. 35, No. 2. (11 January 2006), pp. 104-124.
    by Grace Brannigan, Lawrence Lin, Frank Brown
    posted to coarse-graining implicit-solvent by softsimu on 2008-03-18 17:50:16 as **
  • Simulations of biomembranes and water: Important technical aspects
    Fluid Phase Equilib., Vol. 261, No. 1-2. (2007), pp. 18-25.
    by SV Bennun, AN Dickey, C Xing, R Faller
    posted to coarse-graining by softsimu on 2008-04-11 19:21:52 as **
  • Structure of Spheroidal HDL Particles Revealed by Combined Atomistic and Coarse-Grained Simulations
    Biophys. J., Vol. 94, No. 6. (15 March 2008), pp. 2306-2319.
    by Andrea Catte, James C Patterson, Denys Bashtovyy, Martin K Jones, Feifei Gu, Ling Li, Aldo Rampioni, Durba Sengupta, Timo Vuorela, Perttu Niemela, Mikko Karttunen, Siewert J Marrink, Ilpo Vattulainen, Jere P Segrest
    posted to coarse-graining hdl by softsimu on 2008-03-05 20:55:23 as ** along with 1 person sunnytov
  • Configurational Entropies of Lipids in Pure and Mixed Bilayers from Atomic-Level and Coarse-Grained Molecular Dynamics Simulations
    J. Phys. Chem. B, Vol. 110, No. 31. (10 August 2006), pp. 15602-15614.
    by R Baron, AH Devries, PH Hunenberger, WF Vangunsteren
    posted to coarse-graining by softsimu on 2008-02-18 00:16:58 as **
  • Conformational analysis of lipid molecules by self-organizing maps
    The Journal of Chemical Physics, Vol. 126, No. 5. (2007)
    by Teemu Murtola, Mikko Kupiainen, Emma Falck, Ilpo Vattulainen
    posted to coarse-graining by softsimu on 2008-03-08 20:22:22 as **
  • Coarse Grained Model for Semiquantitative Lipid Simulations
    J. Phys. Chem. B, Vol. 108, No. 2. (15 January 2004), pp. 750-760.
    by SJ Marrink, AH Devries, AE Mark
    posted to coarse-graining by softsimu on 2008-02-18 00:16:34 as ** along with 2 people choonpeng sunnytov
  • Multiscale modeling of lipids and lipid bilayers
    European Biophysics Journal, Vol. 35, No. 1. (19 December 2005), pp. 53-61.
    by Alexander Lyubartsev
    posted to coarse-graining by softsimu on 2008-01-29 01:06:44 as **
  • Tunable generic model for fluid bilayer membranes
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 72, No. 1. (2005)
    by Ira R Cooke, Kurt Kremer, Markus Deserno
    posted to coarse-graining by softsimu on 2008-03-18 17:53:44 as **
  • Automatic coarse graining of polymers
    Polymer, Vol. 45, No. 11. (May 2004), pp. 3869-3876.
    by Roland Faller
    posted to coarse-graining by softsimu on 2008-03-18 17:23:53 as **
  • Transmembrane Peptide-Induced Lipid Sorting and Mechanism of Lalpha-to-Inverted Phase Transition Using Coarse-Grain Molecular Dynamics
    Biophys. J., Vol. 87, No. 4. (1 October 2004), pp. 2107-2115.
    by Steve O Nielsen, Carlos F Lopez, Ivaylo Ivanov, Preston B Moore, John C Shelley, Michael L Klein
    posted to coarse-graining peptides by softsimu on 2008-03-18 18:53:51 as **
  • Coarse-grained computations for a micellar system.
    J Chem Phys, Vol. 122, No. 4. (22 January 2005)
    by DI Kopelevich, AZ Panagiotopoulos, IG Kevrekidis
    posted to coarse-graining micelles by softsimu on 2008-01-19 16:06:47 as ** along with 1 person baaden
  • The MARTINI Coarse-Grained Force Field: Extension to Proteins
    J. Chem. Theory Comput. (16 April 2008)
    by Luca Monticelli, Senthil K Kandasamy, Xavier Periole, Ronald G Larson, Peter D Tieleman, Siewert-Jan Marrink
    posted to coarse-graining martini by softsimu on 2008-06-27 19:29:01 as ** along with 5 people and 1 group middledomain sobolevnrm Ema aqeel DanielParton baker-group
  • The MARTINI Force Field: Coarse Grained Model for Biomolecular Simulations.
    Journal of Physical Chemistry B (15 June 2007)
    by Siewert J Marrink, HJ Risselada, Serge Yefimov, DP Tieleman, Alex H Vries
    posted to coarse-graining force force-field martini by softsimu on 2008-01-10 14:23:39 as ** along with 3 people choonpeng dimka sunnytov
  • A systematic method to derive force fields for coarse-grained simulations of phospholipids
    Computer Physics Communications, Vol. 175, No. 4. (15 August 2006), pp. 264-268.
    by J Elezgaray, M Laguerre
    posted to coarse-graining by softsimu on 2008-03-18 18:59:12 as **
  • Multiscale coarse graining of liquid-state systems
    The Journal of Chemical Physics, Vol. 123, No. 13. (2005)
    by Sergei Izvekov, Gregory A Voth
    posted to coarse-graining by softsimu on 2008-03-18 17:34:41 as **
  • Pores in bilayer membranes of amphiphilic molecules: Coarse-grained molecular dynamics simulations compared with simple mesoscopic models
    The Journal of Chemical Physics, Vol. 121, No. 4. (2004), pp. 1890-1900.
    by C Loison, M Mareschal, F Schmid
    posted to pores coarse-graining membranes by softsimu on 2008-01-23 06:35:02 as **
  • A strategy for analysis of (molecular) equilibrium simulations: Configuration space density estimation, clustering, and visualization
    The Journal of Chemical Physics, Vol. 114, No. 5. (2001), pp. 2079-2089.
    by Fred A Hamprecht, Christine Peter, Xavier Daura, Walter Thiel, Wilfred F van Gunsteren
    posted to coarse-graining by softsimu on 2008-03-18 19:02:32 as **
  • A Quantitative Coarse-Grain Model for Lipid Bilayers
    J. Phys. Chem. B, Vol. 112, No. 3. (24 January 2008), pp. 802-815.
    by M Orsi, DY Haubertin, WE Sanderson, JW Essex
    posted to coarse-graining by softsimu on 2008-06-27 19:34:14 as ** along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
  • Calculation of effective interaction potentials from radial distribution functions: A reverse Monte Carlo approach
    Physical Review E, Vol. 52, No. 4. (October 1995), 3730.
    by Alexander P Lyubartsev, Aatto Laaksonen
    posted to coarse-graining imc by softsimu on 2008-01-29 01:06:13 as **
  • Coarse-grained model for phospholipid/cholesterol bilayer
    The Journal of Chemical Physics, Vol. 121, No. 18. (2004), pp. 9156-9165.
    by Teemu Murtola, Emma Falck, Michael Patra, Mikko Karttunen, Ilpo Vattulainen
    posted to cholesterol coarse-graining phospholipid by softsimu on 2008-01-21 18:05:17 as **
  • Coarse-Graining and Self-Dissimilarity of Complex Networks
    (18 Oct 2004)
    by Shalev Itzkovitz, Reuven Levitt, Nadav Kashtan, Ron Milo, Michael Itzkovitz, Uri Alon
    posted to coarse-graining network resolution self-dissimilarity by scis0000001 on 2006-11-25 13:50:59 as **
  • Coarse-graining and self-dissimilarity of complex networks
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 71, No. 1. (2005)
    by Shalev Itzkovitz, Reuven Levitt, Nadav Kashtan, Ron Milo, Michael Itzkovitz, Uri Alon
    posted to coarse-graining network by rgb on 2006-08-03 17:24:33 as ** along with 1 group pileWorks
  • Optimal allocation of replicas in parallel tempering simulations.
    J Chem Phys, Vol. 122, No. 2. (8 January 2005)
    by N Rathore, M Chopra, JJ de Pablo
    posted to coarse-graining methods replica_exchange by baaden on 2005-07-31 12:21:10 as ** along with 2 people dgront sikorski
  • Artifacts in dynamical simulations of coarse-grained model lipid bilayers.
    J Chem Phys, Vol. 122, No. 20. (22 May 2005)
    by AF Jakobsen, OG Mouritsen, G Besold
    posted to cgreview coarse-graining lipid_bilayers soft_matter by baaden on 2005-07-31 12:13:44 as **
  • Coarse graining using pretabulated potentials: Liquid benzene.
    J Chem Phys, Vol. 122, No. 24. (22 June 2005)
    by N Zacharopoulos, N Vergadou, DN Theodorou
    posted to cgreview coarse-graining by baaden on 2005-07-31 12:07:30 as **
  • Coarse-grained kinetic computations for rare events: application to micelle formation.
    J Chem Phys, Vol. 122, No. 4. (22 January 2005)
    by DI Kopelevich, AZ Panagiotopoulos, IG Kevrekidis
    posted to cgreview coarse-graining physchem soft_matter by baaden on 2005-07-31 12:18:39 as **
  • A coarse-grained model for double-helix molecules in solution: spontaneous helix formation and equilibrium properties.
    J Chem Phys, Vol. 122, No. 12. (22 March 2005)
    by HL Tepper, GA Voth
    posted to cgreview coarse-graining by baaden on 2005-07-31 12:15:37 as **
  • Study of the Villin headpiece folding dynamics by combining coarse-grained Monte Carlo evolution and all-atom molecular dynamics.
    Proteins, Vol. 58, No. 2. (1 February 2005), pp. 459-471.
    by GM De Mori, G Colombo, C Micheletti
    posted to cgreview coarse-graining folding by baaden on 2005-07-31 12:17:47 as **
  • Mesoscale model of polymer melt structure: self-consistent mapping of molecular correlations to coarse-grained potentials.
    J Chem Phys, Vol. 122, No. 10. (8 March 2005)
    by HS Ashbaugh, HA Patel, SK Kumar, S Garde
    posted to cgreview coarse-graining parameterization by baaden on 2005-07-31 12:16:40 as **
  • Maturation dynamics of bacteriophage HK97 capsid.
    Structure (Camb), Vol. 13, No. 3. (March 2005), pp. 413-421.
    by AJ Rader, DH Vlad, I Bahar
    posted to coarse-graining elastic_network gnm by baaden on 2005-07-31 16:47:34 as **
  • Spatially adaptive grand canonical ensemble Monte Carlo simulations.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 71, No. 2 Pt 2. (February 2005)
    by A Chatterjee, MA Katsoulakis, DG Vlachos
    posted to coarse-graining by baaden on 2005-07-31 16:45:20 as *
  • Long-timescale simulation methods.
    Curr Opin Struct Biol, Vol. 15, No. 2. (April 2005), pp. 151-156.
    by R Elber
    posted to cgreview coarse-graining methods by baaden on 2005-07-31 12:36:40 as **
  • iGNM: a database of protein functional motions based on Gaussian Network Model.
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2978-2987.
    by LW Yang, X Liu, CJ Jursa, M Holliman, AJ Rader, HA Karimi, I Bahar
    posted to cgreview coarse-graining elastic_network by baaden on 2005-07-31 12:42:12 as ** along with 3 people and 3 groups barry yongzhao choonpeng structural_bioinformatics Bioinformatics TSRI_MGL
  • Structural dynamics of nucleosome core particle: comparison with nucleosomes containing histone variants.
    Proteins, Vol. 58, No. 3. (15 February 2005), pp. 683-696.
    by A Ramaswamy, I Bahar, I Ioshikhes
    posted to coarse-graining elastic_network gnm by baaden on 2005-07-31 16:48:04 as **
  • The energy landscape as a unifying theme in molecular science.
    Philos Transact A Math Phys Eng Sci, Vol. 363, No. 1827. (15 February 2005)
    by DJ Wales
    posted to cgreview coarse-graining by baaden on 2005-07-31 16:49:22 as **
  • Balancing energy and entropy: A minimalist model for the characterization of protein folding landscapes.
    Proc Natl Acad Sci U S A, Vol. 102, No. 29. (19 July 2005), pp. 10141-10146.
    by P Das, S Matysiak, C Clementi
    posted to coarse-graining folding methods by baaden on 2005-07-31 17:03:26 as **
  • A structural perspective on protein-protein interactions.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 313-324.
    by RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali
    posted to cgreview coarse-graining proteins by baaden on 2005-07-31 14:17:16 as ** along with 13 people and 1 group bicko anita chad_davis dgront sriram_s ruvido cjeans Evangelia Pao-Yang marti higueruelo jteyra timg structure-bii
  • Normal-modes-based prediction of protein conformational changes guided by distance constraints.
    Biophys J, Vol. 88, No. 5. (May 2005), pp. 3109-3117.
    by W Zheng, BR Brooks
    posted to cgreview coarse-graining elastic_network methods proteins by baaden on 2005-07-31 13:12:29 as ** along with 1 person aqeel
  • Multi-scale Molecular Modeling of Chemical Reactivity
    Molecular Simulation, Vol. 30, No. 11 - 12. (January 2004), pp. 699-748.
    by Erik E Santiso, Keith E Gubbins
    posted to cgreview coarse-graining methods physchem review by baaden on 2005-07-31 14:00:20 as **
    • Вы можете ссылаться на эту страницу по адресу: http://www.citeulike.org/tag/coarse-graining

    Result page: 1 2 Next RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.