Регистрация | Вход в службу | FAQ      [?] 

Ключевое слово e_coli [100 articles]

Recent papers classified by the tag e_coli.
  • How to make a biological switch.
    J Theor Biol, Vol. 203, No. 2. (21 March 2000), pp. 117-133.
    by J Cherry, F Adler
    posted to e_coli kinematics by smithco on 2005-11-29 21:31:01 as ** along with 4 people and 2 groups rklancer monod balicea sstoma Plant-Tissue-Simulation VirtualPlants
  • Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes
    Nucleic Acids Research, Vol. 33, No. 10. (2005), pp. 3165-3175.
    by Aditi Kanhere, Manju Bansal
    posted to eucariotic_transcription_regulation e_coli by lptolik on 2008-09-13 05:56:31 as **
  • Mixture models for analysis of melting temperature data.
    BMC Bioinformatics, Vol. 9 (11 September 2008), 370.
    by Christoffer Nellaker, Fredrik Uhrzander, Joanna Tyrcha, Hakan Karlsson
    posted to e_coli by lptolik on 2008-09-17 10:10:15 as **
  • Increasing the efficiency of bacterial transcription simulations: when to exclude the genome without loss of accuracy
    BMC Bioinformatics, Vol. 9 (12 September 2008), 373.
    by Marco AJ Iafolla, Guang Q Dong, David R Mcmillen
    posted to e_coli by lptolik on 2008-09-17 10:12:30 as **** along with 1 person dolchan
  • The sigma70 family of sigma factors
    Genome Biology, Vol. 4, No. 1. (2003)
    by Mark Paget, John Helmann
    posted to e_coli by lptolik on 2008-09-11 07:38:14 as **
  • A novel method for prokaryotic promoter prediction based on DNA stability.
    BMC Bioinformatics, Vol. 6, No. 1. (5 January 2005)
    by A Kanhere, M Bansal
    posted to e_coli by lptolik on 2008-09-13 05:56:03 as ** along with 1 person ziquje
  • A Mathematical Model for Transcriptional Interference by RNA Polymerase Traffic in Escherichia coli
    Journal of Molecular Biology, Vol. 346, No. 2. (18 February 2005), pp. 399-409.
    by Kim Sneppen, Ian B Dodd, Keith E Shearwin, Adam C Palmer, Rachel A Schubert, Benjamin P Callen, Barry J Egan
    posted to e_coli by lptolik on 2008-09-13 10:50:12 as **
  • DNA A-tracts bending: Polarization effects on electrostatic interactions across their minor groove
    Journal of Theoretical Biology, Vol. 252, No. 4. (21 June 2008), pp. 742-749.
    by Anas M Ababneh, Zaid Q Ababneh, Cathy C Large
    posted to electrostatics e_coli by lptolik on 2008-09-11 17:47:26 as ***
  • Plant bZIP G-box binding factors. 
    European Journal of Biochemistry, Vol. 268, No. 22. (2001), pp. 5655-5666.
    by Yann Sibéril, Pierre Doireau, Pascal Gantet
    posted to eucariotic_transcription_regulation e_coli by lptolik on 2008-09-11 17:49:14 as **
  • Insights on protein-DNA recognition by coarse grain modelling
    Journal of Computational Chemistry, Vol. 9999, No. 9999. (2008), NA.
    by P Poulain, A Saladin, B Hartmann, C Prévost
    posted to electrostatics e_coli by lptolik on 2008-09-11 17:48:51 as **
  • Reevaluating the relationship between EPR spectra and enzyme structure for the iron sulfur clusters in NADH:quinone oxidoreductase.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 31. (31 July 2007), pp. 12720-12725.
    by G Yakovlev, T Reda, J Hirst
    posted to active_sites bovine e_coli electron-transfer epr_spectra iron-sulfur nadh spectroscopy subunits by LHON on 2008-05-12 17:27:13 as *****
  • A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli.
    Genome Res, Vol. 14, No. 2. (February 2004), pp. 201-208.
    by ML Bulyk, AM McGuire, N Masuda, GM Church
    posted to dna_binding e_coli gene_regulation genome protein-dna_interaction transcription_factor by kaarsinogen on 2006-07-17 22:24:10 as ** along with 2 people LeightonP sconlan
  • A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome.
    J Mol Biol, Vol. 284, No. 2. (27 November 1998), pp. 241-254.
    by K Robison, AM McGuire, GM Church
    posted to dna_binding e_coli protein-dna_interaction by kaarsinogen on 2006-01-25 22:38:11 as ** along with 1 person nklee
  • Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.
    Proc Natl Acad Sci U S A, Vol. 99, No. 26. (24 December 2002), pp. 17020-17024.
    by RA Welch, V Burland, G Plunkett, P Redford, P Roesch, D Rasko, EL Buckles, SR Liou, A Boutin, J Hackett, D Stroud, GF Mayhew, DJ Rose, S Zhou, DC Schwartz, NT Perna, HL Mobley, MS Donnenberg, FR Blattner
    posted to e_coli transcription_factor by kaarsinogen on 2005-10-27 21:41:28 as *** along with 2 people madhadron Xavier
  • Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
    Nature, Vol. 409, No. 6819. (25 January 2001), pp. 529-533.
    by Nicole T Perna, Guy Plunkett, Valerie Burland, Bob Mau, Jeremy D Glasner, Debra J Rose, George F Mayhew, Peter S Evans, Jason Gregor, Heather A Kirkpatrick, Gyorgy Posfai, Jeremiah Hackett, Sara Klink, Adam Boutin, Ying Shao, Leslie Miller, Erik J Grotbeck, Wayne N Davis, Alex Lim, Eileen T Dimalanta, Konstantinos D Potamousis, Jennifer Apodaca, Thomas S Anantharaman, Jieyi Lin, Galex Yen, David C Schwartz, Rodney A Welch, Frederick R Blattner
    posted to e_coli genome by kaarsinogen on 2006-07-18 23:56:23 as ** along with 2 people treangen Xavier
  • Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation
    Genome Res., Vol. 14, No. 1. (1 January 2004), pp. 99-108.
    by Moshe Pritsker, Yir-Chung Liu, Michael A Beer, Saeed Tavazoie
    posted to dna_binding e_coli gene_regulation genome protein-dna_interaction transcription_factor by kaarsinogen on 2006-07-17 22:47:37 as ** along with 2 people koller xili03
  • Operons in Escherichia coli: genomic analyses and predictions.
    Proc Natl Acad Sci U S A, Vol. 97, No. 12. (6 June 2000), pp. 6652-6657.
    by H Salgado, G Moreno-Hagelsieb, TF Smith, J Collado-Vides
    posted to e_coli genome operon by kaarsinogen on 2005-05-11 15:49:11 as *** along with 2 people ziquje vladimirov
  • Discovery of novel transcription factor binding sites by statistical overrepresentation.
    Nucleic Acids Res, Vol. 30, No. 24. (15 December 2002), pp. 5549-5560.
    by S Sinha, M Tompa
    posted to dna_binding e_coli transcription_factor by kaarsinogen on 2006-07-17 22:44:59 as ** along with 9 people dquest xiaobeizhao smiddha GeeSharpMinor xi03 xili03 ep161302 wenhan pradiptaray
  • Factors influencing the identification of transcription factor binding sites by cross-species comparison.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1523-1532.
    by LA McCue, W Thompson, CS Carmack, CE Lawrence
    posted to dna_binding e_coli transcription_factor by kaarsinogen on 2005-11-04 20:39:29 as *** along with 2 people dquest nklee
  • Adaptive evolution of transcription factor binding sites.
    BMC Evol Biol, Vol. 4, No. 1. (28 October 2004)
    by J Berg, S Willmann, M Lässig
    posted to dna_binding e_coli protein-dna_interaction transcription_factor by kaarsinogen on 2006-07-17 19:07:37 as ** along with 4 people and 1 group bmajoros jjray discreteonyxorb cisevol cis-regulatory-evolution
  • Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli.
    J Bacteriol, Vol. 175, No. 5. (March 1993), pp. 1484-1492.
    by SP Cohen, H Hächler, SB Levy
    posted to e_coli transcription_factor by kaarsinogen on 2005-10-27 21:41:59 as ***
  • Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
    Science, Vol. 316, No. 5824. (27 April 2007), pp. 593-597.
    by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Y Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita
    posted to e_coli metabolism robustness systems_approach by jjray on 2007-04-27 21:49:27 as read along with 4 people and 1 group raiyar dylan77 ytoya IgorG steinmetzlab
  • Accelerated evolution of resistance in multidrug environments
    Proceedings of the National Academy of Sciences (2008)
    by Matthew Hegreness, Noam Shoresh, Doris Damian, Daniel Hartl, Roy Kishony
    posted to synergistic evolution e_coli bliss_independence bacteria by jjray on 2008-09-09 16:17:38 as ** along with 1 person tmmurali
  • The bacterial adaptive response gene, barA, encodes a novel conserved histidine kinase regulatory switch for adaptation and modulation of metabolism in Escherichia coli.
    Mol Cell Biochem, Vol. 253, No. 1-2. (November 2003), pp. 167-177.
    by SN Sahu, S Acharya, H Tuminaro, I Patel, K Dudley, JE LeClerc, TA Cebula, S Mukhopadhyay
    posted to bacteria bara csra e_coli two-component_system by jjray on 2008-02-18 17:53:57 as **
  • Stimulus-dependent differential regulation in the Escherichia coli PhoQ PhoP system
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 16305-16310.
    by Tim Miyashiro, Mark Goulian
    posted to bacteria e_coli gene_expression gene_regulation phopq signaling transcriptional_regulation two-component_system by jjray on 2008-03-26 22:00:05 as read
  • Regulation of Autophosphorylation of Escherichia coli Nitrogen Regulator II by the PII Signal Transduction Protein
    J. Bacteriol., Vol. 181, No. 6. (15 March 1999), pp. 1906-1911.
    by Peng Jiang, Alexander J Ninfa
    posted to atp bacteria e_coli phosphorylation signaling two-component_system by jjray on 2008-08-20 19:06:01 as read
  • Mutations That Alter the Kinase and Phosphatase Activities of the Two-Component Sensor EnvZ
    J. Bacteriol., Vol. 180, No. 17. (1 September 1998), pp. 4538-4546.
    by Weihong Hsing, Frank D Russo, Karen K Bernd, Thomas J Silhavy
    posted to two-component_system signaling phosphorylation e_coli bacteria atp by jjray on 2008-10-07 20:54:51 as **
  • Hierarchy and feedback in the evolution of the Escherichia coli transcription network
    PNAS, Vol. 104, No. 13. (27 March 2007), pp. 5516-5520.
    by Cosentino, P Jona, B Bassetti, H Isambert
    posted to e_coli evolution feedback feedforward gene_regulation network_motifs systems_approach by jjray on 2007-04-10 19:33:31 as read along with 3 people cjeans zwang dquest
  • The TorR high-affinity binding site plays a key role in both torR autoregulation and torCAD operon expression in Escherichia coli.
    J Bacteriol, Vol. 182, No. 4. (February 2000), pp. 961-966.
    by M Ansaldi, G Simon, M Lepelletier, V Méjean
    posted to e_coli gene_regulation tor two-component_system by jjray on 2008-03-27 21:03:43 as read
  • Cross-talk suppression between the CpxA-CpxR and EnvZ-OmpR two-component systems in E. coli
    Molecular Microbiology, Vol. 70, No. 2. (2008), pp. 494-506.
    by Albert Siryaporn, Mark Goulian
    posted to two-component_system signaling e_coli crosstalk bacteria by jjray on 2008-09-26 15:35:15 as read
  • The bacterial adaptive response gene, barA, encodes a novel conserved histidine kinase regulatory switch for adaptation and modulation of metabolism in Escherichia coli
    Molecular and Cellular Biochemistry, Vol. 253, No. 1. (1 November 2003), pp. 167-177.
    by Surasri N Sahu, Sharmistha Acharya, Helina Tuminaro, Isha Patel, Kim Dudley, Eugene J Leclerc, Thomas A Cebula, Suman Mukhopadhyay
    posted to bacteria bara e_coli metabolism signaling two-component_system by jjray on 2008-02-18 19:44:04 as ** along with 1 person srfairclough
  • Receptor density balances signal stimulation and attenuation in membrane-assembled complexes of bacterial chemotaxis signaling proteins
    Proceedings of the National Academy of Sciences
    by Tatiana Y Besschetnova, David J Montefusco, Abdalin E Asinas, Anthony L Shrout, Frances M Antommattei, Robert M Weis
    posted to adaptation bacteria e_coli receptor signaling by jjray on 2008-08-19 16:35:05 as **
  • It's a noisy business! Genetic regulation at the nanomolar scale
    Trends in Genetics, Vol. 15, No. 2. (1 February 1999), pp. 65-69.
    by Harley H Mcadams, Adam Arkin
    posted to e_coli gene_regulation gillespie_algorithm mathematical_model network noise review stochastic by jjray on 2007-06-04 18:18:49 as read along with 1 person rflrob
  • Crystal Structure of the C-terminal Domain of the Two-Component System Transmitter Protein Nitrogen Regulator II (NRII; NtrB), Regulator of Nitrogen Assimilation in Escherichia coli
    Biochemistry, Vol. 43, No. 21. (1 June 2004), pp. 6670-6678.
    by Y Song, D Peisach, AA Pioszak, Z Xu, AJ Ninfa
    posted to bacteria e_coli phosphorylation two-component_system by jjray on 2008-08-19 22:55:52 as read
  • The Escherichia coli BarA-UvrY two-component system is a virulence determinant in the urinary tract.
    BMC Microbiol, Vol. 6 (2006)
    by H Tomenius, AK Pernestig, K Jonas, D Georgellis, R Möllby, S Normark, O Melefors
    posted to bacteria bara csra e_coli two-component_system by jjray on 2008-02-18 17:50:26 as read
  • Evolutionary Dynamics of Prokaryotic Transcriptional Regulatory Networks
    Journal of Molecular Biology, Vol. 358, No. 2. (28 April 2006), pp. 614-633.
    by Madan, Sarah A Teichmann, L Aravind
    posted to transcriptional_regulation prokaryote network evolutionary_dynamics evolution e_coli bacteria by jjray on 2008-10-07 15:23:53 as ** along with 6 people balabu Retchless tny tvdbulck timflutre cjeans
  • Control of rpoS transcription in Escherichia coli and Pseudomonas: why so different?
    Mol Microbiol, Vol. 49, No. 1. (July 2003), pp. 1-9.
    by V Venturi
    posted to bacteria bara e_coli sigma_factor transcription by jjray on 2008-02-18 17:53:09 as read
  • Function of conserved histidine-243 in phosphatase activity of EnvZ, the sensor for porin osmoregulation in Escherichia coli
    J. Bacteriol., Vol. 179, No. 11. (1 June 1997), pp. 3729-3735.
    by W Hsing, TJ Silhavy
    posted to two-component_system signaling e_coli bacteria atp by jjray on 2008-10-07 21:04:00 as **
  • Rapid Dephosphorylation of the TorR Response Regulator by the TorS Unorthodox Sensor in Escherichia coli
    J. Bacteriol., Vol. 183, No. 8. (15 April 2001), pp. 2691-2695.
    by Mireille Ansaldi, Cecile Jourlin-Castelli, Michele Lepelletier, Laurence Théraulaz, Vincent Méjean
    posted to e_coli gene_regulation tor two-component_system by jjray on 2008-03-27 20:52:42 as **
  • Genetic and Biochemical Studies of Phosphatase Activity of PhoR
    J. Bacteriol., Vol. 185, No. 3. (1 February 2003), pp. 1112-1115.
    by Daniel O Carmany, Kristine Hollingsworth, William R Mccleary
    posted to bacteria e_coli two-component_system by jjray on 2008-02-11 18:16:38 as **
  • Genetic and functional characterization of the Escherichia coli BarA-UvrY two-component system: point mutations in the HAMP linker of the BarA sensor give a dominant-negative phenotype.
    J Bacteriol, Vol. 187, No. 21. (November 2005), pp. 7317-7324.
    by H Tomenius, AK Pernestig, CF Méndez-Catalá, D Georgellis, S Normark, O Melefors
    posted to bacteria bara csra e_coli two-component_system by jjray on 2008-02-08 16:22:25 as read
  • An unsuspected autoregulatory pathway involving apocytochrome TorC and sensor TorS in Escherichia coli.
    Proc Natl Acad Sci U S A, Vol. 98, No. 20. (25 September 2001), pp. 11615-11620.
    by S Gon, C Jourlin-Castelli, L Théraulaz, V Méjean
    posted to e_coli gene_regulation tor two-component_system by jjray on 2008-03-27 20:53:06 as **
  • Anticipatory Behavior Within Microbial Genetic Networks
    Science (8 May 2008), 1154456.
    by Ilias Tagkopoulos, Yir-Chung Liu, Saeed Tavazoie
    posted to bacteria e_coli evolution network simulation by jjray on 2008-06-10 22:37:00 as read along with 7 people and 2 groups dbikard djkt roys skumagai brembs deanmalmgren stringertheory Bacterial Genome Plasticity Centre de Recherches Interdisciplinaires
  • The product of the pleiotropic Escherichia coli gene csrA modulates glycogen biosynthesis via effects on mRNA stability.
    J Bacteriol, Vol. 177, No. 10. (May 1995), pp. 2663-2672.
    by MY Liu, H Yang, T Romeo
    posted to csra e_coli mrna two-component_system by jjray on 2008-02-04 21:02:50 as **
  • Instability of sensory histidine kinase mRNAs in Escherichia coli.
    Genes Cells, Vol. 8, No. 2. (February 2003), pp. 179-187.
    by T Aiso, R Ohki
    posted to bacteria e_coli mrna two-component_system by jjray on 2008-02-18 18:04:06 as read
  • Stochastic Receptor Expression Allows Sensitive Bacteria to Evade Phage Attack. Part I: Experiments
    Biophys. J., Vol. 94, No. 11. (1 June 2008), pp. 4525-4536.
    by E Chapman-Mcquiston, XL Wu
    posted to bacteria e_coli persister phenotypic_heterogeneity receptor stochastic by jjray on 2008-05-14 22:44:46 as ** along with 1 person madhadron
  • Binding of the TorR regulator to cis-acting direct repeats activates tor operon expression.
    Mol Microbiol, Vol. 17, No. 5. (September 1995), pp. 971-980.
    by G Simon, C Jourlin, M Ansaldi, MC Pascal, M Chippaux, V Méjean
    posted to e_coli gene_regulation tor two-component_system by jjray on 2008-03-27 21:03:28 as **
  • Demand theory of gene regulation. I. Quantitative development of the theory.
    Genetics, Vol. 149, No. 4. (August 1998), pp. 1665-1676.
    by MA Savageau
    posted to demand_theory e_coli evolution gene_regulation mathematical_model transcription by jjray on 2005-08-31 20:30:14 as read along with 1 person i41m
  • A novel device of bacterial signal transducers.
    EMBO J, Vol. 13, No. 21. (1 November 1994), pp. 5195-5202.
    by K Ishige, S Nagasawa, S Tokishita, T Mizuno
    posted to bacteria bara e_coli signaling two-component_system by jjray on 2008-02-18 18:00:42 as read
  • Network motifs in the transcriptional regulation network of Escherichia coli
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 64-68.
    by Shai S Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon
    posted to dense_overlapping_regulon e_coli feedforward network network_motifs systems_approach transcription by jjray on 2005-08-30 19:25:14 as read along with 13 people and 1 group jstajic ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu maralena hannahrajasingh Borelli ethkim EBI-regulation
    • Вы можете ссылаться на эту страницу по адресу: http://www.citeulike.org/tag/e_coli

    Result page: 1 2 Next RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.