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Ключевое слово enhancer_finding [13 articles]

Recent papers classified by the tag enhancer_finding.
  • Predicting transcription factor binding sites using local overrepresentation and comparative genomics
    BMC Bioinformatics, Vol. 7 (31 August 2006), 396.
    by Matthieu Defrance, Helene Touzet
    posted to enhancer_finding prediction tools by brant to the group EisenLab on 2006-09-13 14:20:55 as *** along with 3 people dpollard gpalidwor natstreet
  • Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both.
    Curr Opin Genet Dev, Vol. 15, No. 4. (August 2005), pp. 395-402.
    by T Vavouri, G Elgar
    posted to thesis review enhancer_finding by brant on 2008-04-24 02:02:48 as ** along with 6 people and 2 groups troels_marstrand kaspermunch dpollard adepace lusk Stew Bioinformatics EisenLab
  • Conserved noncoding sequences are reliable guides to regulatory elements
    Trends in Genetics, Vol. 16, No. 9. (1 September 2000), pp. 369-372.
    by Ross C Hardison
    posted to comparative conserved enhancer_finding genomic non-coding by brant on 2008-02-19 01:14:38 as **
  • Using hexamers to predict cis-regulatory modules in Drosophila.
    BMC Bioinformatics, Vol. 6, No. 1. (27 October 2005)
    by Bob Y Chan, Dennis Kibler
    posted to enhancer_finding hexdiff by brant on 2008-04-09 19:24:27 as ** along with 4 people and 1 group indigoviolet troels_marstrand postrational wrowell EisenLab
  • Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b
    Genome Res. (10 December 2007), gr.6929408.
    by David M Mcgaughey, Ryan M Vinton, Jimmy Huynh, Amr Al-Saif, Michael A Beer, Andrew S Mccallion
    posted to non-conserved enhancer_finding constraint comparative by brant on 2008-02-18 20:40:04 as **** along with 2 people djkt maximilianh
  • Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2858-2864.
    by Pierstorff, Nora, Bergman, M Casey, Wiehe, Thomas
    posted to cis-plus enhancer_finding by brant on 2008-04-09 19:23:00 as ** along with 2 people and 1 group indigoviolet emilyhare EisenLab
  • Computational analyses of eukaryotic promoters.
    BMC Bioinformatics, Vol. 8 Suppl 6 (2007)
    by MQ Zhang
    posted to thesis review promoter_prediction enhancer_finding by brant on 2008-04-24 02:18:10 as ** along with 1 person jyuh
  • The identification and functional characterisation of conserved regulatory elements in developmental genes.
    Brief Funct Genomic Proteomic, Vol. 3, No. 4. (February 2005), pp. 332-350.
    by T Dickmeis, F Müller
    posted to thesis review enhancer_finding conservation by brant on 2008-04-24 02:05:55 as ** along with 1 person and 1 group dpollard EisenLab
  • Multiple conserved regulatory elements with overlapping functions determine Sox10 expression in mouse embryogenesis.
    Nucleic Acids Res (26 September 2007)
    by Torsten Werner, Alexander Hammer, Mandy Wahlbuhl, Michael R R Bösl, Michael Wegner
    posted to vertebrate enhancer_finding conservation by brant on 2008-05-15 18:30:51 as ** along with 1 person maximilianh
  • Enhancer identification through comparative genomics
    Seminars in Cell & Developmental Biology, Vol. 18, No. 1. (February 2007), pp. 140-152.
    by Axel Visel, James Bristow, Len A Pennacchio
    posted to comparative enhancer_finding review by brant on 2008-02-24 04:22:07 as **
  • ModuleMiner: improved computational detection of cis-regulatory modules. Different modes of gene regulation in embryonic development and adult tissues?
    Genome Biology, Vol. 9, No. 4. (2008)
    by Peter Van Loo, Stein Aerts, Bernard Thienpont, Bart De Moor, Yves Moreau, Peter Marynen
    posted to enhancer_finding mammalian by brant on 2008-04-22 01:42:01 as ** along with 4 people djkt natstreet maximilianh phoenixzxl
  • A survey of DNA motif finding algorithms
    BMC Bioinformatics, Vol. 8, No. Suppl 7. (2007)
    by Modan Das, Ho K Dai
    posted to thesis review motif enhancer_finding binding_site_model by brant on 2008-04-24 02:16:55 as ** along with 7 people pradiptaray xili03 dquest nklee maximilianh yevishere csdhwang
  • Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes
    Genome Biology, Vol. 9 (15 February 2008), R34.
    by Par G Engstrom, David Fredman, Boris Lenhard
    posted to comparative enhancer_finding software by brant on 2008-03-07 23:34:02 as ** along with 5 people isimpson boudinot natstreet heliopais idonaldson
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