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Ключевое слово gene [814 articles]

Recent papers classified by the tag gene.
  • Plasmid-chromosome shuffling for non-deletion alleles in yeast
    Nature Methods, Vol. 5, No. 2. (13 January 2008), pp. 167-169.
    by Zhiwei Huang, Richard S Sucgang, Yu-Yi Lin, Xiaomin Shi, Jef D Boeke, Xuewen Pan
    posted to yeast mutation gene by zwang on 2008-07-01 08:38:15 as *** along with 1 person csaveanu
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to divergence evolution expression gene promoter by zwang on 2008-01-15 16:40:20 as ** along with 8 people and 2 groups Jporci balicea kengg biomcgary cisevol caseybrown renatomilani mclarenv cis-regulatory-evolution BergmanLab
  • Yeast life span extension by depletion of 60s ribosomal subunits is mediated by Gcn4.
    Cell, Vol. 133, No. 2. (18 April 2008), pp. 292-302.
    by KK Steffen, VL MacKay, EO Kerr, M Tsuchiya, D Hu, LA Fox, N Dang, ED Johnston, JA Oakes, BN Tchao, DN Pak, S Fields, BK Kennedy, M Kaeberlein
    posted to yeast gene deletion complex cellcycle by zwang on 2008-07-10 09:28:01 as **
  • How does eukaryotic gene prediction work?
    Nature Biotechnology, Vol. 25, No. 8., pp. 883-885.
    by Michael R Brent
    posted to eukaryota gene prediction by zwang on 2007-08-14 08:01:16 as **** along with 7 people and 3 groups jyuh indigoviolet dchughes wenhan cabbagezs nklee ale EisenLab G4ID Genetics-of-Gambling
  • Evolution of chromosome organization driven by selection for reduced gene expression noise
    Nature Genetics, Vol. 39, No. 8. (27 July 2007), pp. 945-949.
    by Nizar N Batada, Laurence D Hurst
    posted to evolution expression gene selection by zwang on 2007-08-09 04:07:24 as * along with 5 people and 2 groups jjray dpollard ealloza djkt lusk EisenLab BioinfoCIPF
  • Genes overexpressed in different human solid cancers exhibit different tissue-specific expression profiles
    PNAS, Vol. 104, No. 32. (7 August 2007), pp. 13122-13127.
    by Jacob Bock-Axelsen, Joseph Lotem, Leo Sachs, Eytan Domany
    posted to expression gene profile tissue by zwang on 2007-08-09 04:05:37 as * along with 1 person jyuh
  • Improvisation in evolution of genes and genomes: whose structure is it anyway?
    Current opinion in structural biology (17 May 2008)
    by Boris E E Shakhnovich, Eugene I I Shakhnovich
    posted to genome gene evolution by zwang on 2008-06-16 03:50:16 as ** along with 2 people marck cabbagesofdoom
  • Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175.
    by Morgan N Price, Paramvir S Dehal, Adam P Arkin
    posted to bacterial gene ortholog regulation transcription by zwang on 2007-11-02 08:03:07 as ** along with 6 people and 3 groups dpollard dquest djkt cabbagezs heliopais blobbybirdman EisenLab cis-regulatory-evolution Myxo group
  • Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function.
    PLoS Comput Biol, Vol. 3, No. 4. (6 April 2007)
    by Yili Chen, Thomas W W Blackwell, Ji Chen, Jing Gao, Angel W W Lee, David J J States
    posted to chromatin gene genome integration prediction structure by zwang on 2007-04-28 12:36:42 as ** along with 1 person and 2 groups kengg Bioinformatics Plantandetc
  • Network-based global inference of human disease genes
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Xuebing Wu, Rui Jiang, Michael Q Zhang, Shao Li
    posted to prediction network human gene by zwang on 2008-05-09 02:59:01 as **** along with 6 people Borelli ptrobajo bootsy maralena jyuh biomcgary
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to evolution gene genome phylogeny by zwang on 2007-11-20 09:04:25 as **** along with 16 people and 4 groups isimpson CharlesM PetrovLab operon tmmurali indigoviolet djkt timflutre stajich Garamonfok lp2 hpaces caseybrown emptyhb urgi noor Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology
  • A Gene Wiki for Community Annotation of Gene Function
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e175.
    by Jon W Huss, Camilo Orozco, James Goodale, Chunlei Wu, Serge Batalov, Tim J Vickers, Faramarz Valafar, Andrew I Su
    posted to gene function annotation by zwang on 2008-07-14 02:46:39 as ** along with 12 people and 2 groups inesdesantiago thomaskelder GMTurner ChrisEvelo barriot kristina reyez kintoki sjc tharris dullhunk stajich VisionLab Berkeley Mycology
  • Evolution: A gene is born
    Nature Reviews Genetics, Vol. 9, No. 6., pp. 415-415.
    by Tanita Casci
    posted to yeast gene evolution by zwang on 2008-05-20 15:52:22 as **** along with 1 person cabbagesofdoom
  • A modular and extensible RNA-based gene-regulatory platform for engineering cellular function
    PNAS (20 August 2007), 0703961104.
    by Maung N Win, Christina D Smolke
    posted to gene regulatory rna by zwang on 2007-08-25 03:58:38 as * along with 4 people and 2 groups austin dchughes kengg Jporci G4ID Genetics-of-Gambling
  • Towards multidimensional genome annotation
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 130-141.
    by Jennifer L Reed, Iman Famili, Ines Thiele, Bernhard O Palsson
    posted to annotation gene genome by zwang on 2008-04-14 01:57:46 as ** along with 10 people and 4 groups jyuh jfr balajis eweaver dchughes cmm raiyar massivemayhem wenhan lylu FAB-lab G4ID steinmetzlab Genetics-of-Gambling
  • Toward a Comprehensive Temperature-Sensitive Mutant Repository of the Essential Genes of Saccharomyces cerevisiae
    Molecular Cell, Vol. 30, No. 2. (25 April 2008), pp. 248-258.
    by Shay Ben-Aroya, Candice Coombes, Teresa Kwok, Kathryn A O'Donnell, Jef D Boeke, Philip Hieter
    posted to yeast mutation gene by zwang on 2008-06-02 07:17:18 as ****
  • Molecular Engineering of Viral Gene Delivery Vehicles
    Annual Review of Biomedical Engineering, Vol. 10, No. 1. (2008), pp. 169-194.
    by David V Schaffer, James T Koerber, Kwang I Lim
    posted to virus structure gene by zwang on 2008-07-23 07:11:52 as **
  • An Approach to Predict Transcription Factor DNA Binding Site Specificity Based upon Gene and Transcription Factor Functional Categorization
    Bioinformatics (10 July 2007), btm348.
    by Ziliang Qian, Lingyi Lu, Xiaojun Liu, Yu-Dong Cai, Yixue Li
    posted to binding dna gene prediction site transcription by zwang on 2007-08-15 03:43:07 as *** along with 1 person xili03
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to expression gene promoter synthetic by zwang on 2007-11-15 01:09:19 as * along with 14 people and 2 groups tresch Retchless tmmurali austin dpollard balicea kengg dbikard margaritis lusk cjeans discreteonyxorb cabbagezs Ema EisenLab SynBioSys
  • Natural history and evolutionary principles of gene duplication in fungi
    Nature, Vol. 449, No. 7158., pp. 54-61.
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
    posted to evolution gene by zwang on 2007-09-06 15:08:20 as ** along with 11 people and 4 groups pkm aheilbut dpollard tny dchughes djkt stajich biomcgary lp2 tzhughes maximilianh EisenLab G4ID Genetics-of-Gambling Berkeley Mycology
  • Wasp Gene Expression Supports an Evolutionary Link Between Maternal Behavior and Eusociality
    Science (27 September 2007), 1146647.
    by Amy L Toth, Kranthi Varala, Thomas C Newman, Fernando E Miguez, Stephen K Hutchison, David A Willoughby, Jan F Simons, Michael Egholm, James H Hunt, Matthew E Hudson, Gene E Robinson
    posted to evolution expression gene by zwang on 2007-10-11 02:22:42 as ** along with 3 people stajich niallhaslam ale
  • Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes
    Science (30 August 2007), 1142490.
    by Julie C Hotopp, Michael E Clark, Deodoro C Oliveira, Jeremy M Foster, Peter Fischer, Monica C Torres, Jonathan D Giebel, Nikhil Kumar, Nadeeza Ishmael, Shiliang Wang, Jessica Ingram, Rahul V Nene, Jessica Shepard, Jeffrey Tomkins, Stephen Richards, David J Spiro, Elodie Ghedin, Barton E Slatko, Herve Tettelin, John H Werren
    posted to bacterial eukaryota evolution gene genome lgt by zwang on 2007-10-11 02:03:35 as **** along with 7 people and 2 groups dpollard bluto emmahe lp2 wrowell paulschlesinger Patola EisenLab Cline_lab
  • Identifying clusters of functionally related genes in genomes.
    Bioinformatics (19 January 2007)
    by Gangman Yi, Sing-Hoi H Sze, Michael R R Thon
    posted to gene genome by zwang on 2007-05-10 08:18:23 as * along with 3 people and 1 group grahamc macavity1g wenhan ParkinsonLab_at_MaRS
  • Protein subcellular relocalization: a new perspective on the origin of novel genes
    Trends in Ecology & Evolution, Vol. 22, No. 7. (July 2007), pp. 338-344.
    by Ashley S Byun-Mckay, R Geeta
    posted to gene localization protein by zwang on 2007-08-18 08:58:16 as *** along with 2 people cjeans Jporci
  • How gene order is influenced by the biophysics of transcription regulation
    PNAS (20 August 2007), 0700672104.
    by Grigory Kolesov, Zeba Wunderlich, Olga N Laikova, Mikhail S Gelfand, Leonid A Mirny
    posted to gene regulation transcription by zwang on 2007-08-27 09:01:56 as * along with 6 people jjray madhadron margaritis Jporci maximilianh lambda
  • Innovation and robustness in complex regulatory gene networks.
    Proc Natl Acad Sci U S A (9 August 2007)
    by S Ciliberti, O C C Martin, A Wagner
    posted to gene network regulatory by zwang on 2007-08-27 08:56:14 as ** along with 3 people and 2 groups dpollard sebastien_vigneau cisevol EisenLab cis-regulatory-evolution
  • High-Throughput In Vivo Analysis of Gene Expression in Caenorhabditis elegans
    PLoS Biology, Vol. 5, No. 9. (1 September 2007), e237.
    by Rebecca Hunt-Newbury, Ryan Viveiros, Robert Johnsen, Allan Mah, Dina Anastas, Lily Fang, Erin Halfnight, David Lee, John Lin, Adam Lorch, Sheldon Mckay, Mark H Okada, Jie Pan, Ana K Schulz, Domena Tu, Kim Wong, Z Zhao, Andrey Alexeyenko, Thomas Burglin, Eric Sonnhammer, Ralf Schnabel, Steven J Jones, Marco A Marra, David L Baillie, Donald G Moerman
    posted to expression gene invivo by zwang on 2007-09-17 10:13:59 as * along with 1 person dlmace
  • Constraint-based functional similarity of metabolic genes: going beyond network topology
    Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2139-2146.
    by Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y Pinter
    posted to gene network phylogeny by zwang on 2007-09-17 09:39:55 as ***
  • Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology
    PLoS Biology, Vol. 5, No. 4. (1 April 2007), e76.
    by Lars Malmström, Michael Riffle, Charlie E Strauss, Dylan Chivian, Trisha N Davis, Richard Bonneau, David Baker
    posted to gene prediction structure yeast by zwang on 2007-04-19 15:17:08 as *
  • Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e54.
    by Axel Bernal, Koby Crammer, Artemis Hatzigeorgiou, Fernando Pereira
    posted to gene prediction by zwang on 2007-04-19 15:12:45 as * along with 4 people and 2 groups alexl dpollard wenhan acarbo Bioinformatics EisenLab
  • Potential Energy Landscape and Robustness of a Gene Regulatory Network: Toggle Switch
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e60.
    by Keun-Young Kim, Jin Wang
    posted to gene network regulation by zwang on 2007-04-19 15:10:52 as **
  • Estimating dynamic models for gene regulation networks
    Bioinformatics (27 May 2008), btn246.
    by Jiguo Cao, Hongyu Zhao
    posted to regulation network modeling gene dynamics by zwang on 2008-06-03 04:00:45 as **
  • The gene and the genon concept: a functional and information-theoretic analysis.
    Mol Syst Biol, Vol. 3 (2007)
    by K Scherrer, J Jost
    posted to gene information-theory by zwang on 2007-04-17 17:24:23 as * along with 4 people and 3 groups dchughes cdawson neils dylan77 G4ID GIG Genetics-of-Gambling
  • Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
    Nature Reviews Genetics, Vol. 8, No. 10. (11 September 2007), pp. 776-790.
    by Alexander Serganov, Dinshaw J Patel
    posted to expression gene regulation ribozyme rna by zwang on 2007-11-01 07:15:05 as *** along with 3 people and 3 groups austin dbikard jmrivort G-quadruplex Supramolecular SynBioSys
  • The liver pharmacological and xenobiotic gene response repertoire
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Georges Natsoulis, Cecelia I Pearson, Jeremy Gollub, Eynon, Joe Ferng, Ramesh Nair, Radha Idury, May D Lee, Mark R Fielden, Richard J Brennan, Alan H Roter, Kurt Jarnagin
    posted to clustering gene human metabolism pathway by zwang on 2008-03-27 05:07:04 as ** along with 5 people and 1 group shikin jyuh caseybrown aubinhon ptrobajo Integrative_biology_behavior
  • Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
    Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560.
    by Christopher D Brown, David S Johnson, Arend Sidow
    posted to evolution expression gene transcription by zwang on 2007-09-18 06:18:00 as ** along with 9 people and 2 groups emptyhb dpollard djkt joepickrell Garamonfok Stew mimulus_99 maximilianh cisevol EisenLab cis-regulatory-evolution
  • Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Chang S Kim
    posted to algorithm bayesian gene network regulatory reverse-engineering by zwang on 2007-07-13 17:20:00 as *** along with 4 people jyuh rdiaz frohike shigepong
  • Genome-wide prediction of matrix attachment regions that increase gene expression in mammalian cells
    Nat Meth, Vol. 4, No. 9. (2007), pp. 747-753.
    by Pierre-Alain Girod, Duc-Quang Nguyen, David Calabrese, Stefania Puttini, Melanie Grandjean, Danielle Martinet, Alexandre Regamey, Damien Saugy, Jacques S Beckmann, Philipp Bucher, Nicolas Mermod
    posted to expression gene genome-wide mammal prediction by zwang on 2007-08-31 16:22:46 as * along with 2 people sebastien_vigneau uz_labu_laimi
  • Parasites lead to evolution of robustness against gene loss in host signaling networks
    Mol Syst Biol, Vol. 4 (15 July 2008)
    by Marcel Salathe, Orkun S Soyer
    posted to network gene evolution by zwang on 2008-07-22 06:55:12 as ** along with 2 people renatomilani jjray
  • A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 794-797.
    by Joel Smith, Christina Theodoris, Eric H Davidson
    posted to dynamics expression gene network regulatory by zwang on 2007-11-05 14:33:49 as * along with 5 people and 1 group cwbrown lshaw shigepong heliopais hpaces EisenLab
  • Lifespan Regulation by Evolutionarily Conserved Genes Essential for Viability.
    PLoS Genet, Vol. 3, No. 4. (6 April 2007)
    by Sean P P Curran, Gary Ruvkun
    posted to evolution gene regulation viability by zwang on 2007-04-29 05:08:51 as ** along with 1 person johncumbers
  • A First-Principles Model of Early Evolution: Emergence of Gene Families, Species, and Preferred Protein Folds
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e139.
    by Konstantin B Zeldovich, Peiqiu Chen, Boris E Shakhnovich, Eugene I Shakhnovich
    posted to evolution folding gene modeling protein specy by zwang on 2007-08-28 07:39:34 as ** along with 6 people and 1 group BioNica grahamc cjeans Jporci farhat biinins ParkinsonLab_at_MaRS
  • Evolutionary plasticity of developmental gene regulatory network architecture
    Proceedings of the National Academy of Sciences (27 November 2007), 0709994104.
    by Veronica F Hinman, Eric H Davidson
    posted to architecture evolution gene network regulatory by zwang on 2007-12-05 10:58:17 as ** along with 3 people tmmurali maximilianh roys
  • A forest-based approach to identifying gene and gene gene interactions
    Proceedings of the National Academy of Sciences (28 November 2007), 0709868104.
    by Xiang Chen, Ching-Ti Liu, Meizhuo Zhang, Heping Zhang
    posted to gene interaction by zwang on 2007-12-05 10:57:47 as * along with 5 people jyuh balicea cjeans xingxu hpaces
  • Regulation of the Expression of the Prostate-specific Antigen by Claudin-7
    Journal of Membrane Biology, Vol. 194, No. 3. (1 July 2003), pp. 187-197.
    by Zheng, D Yu, M Foroohar, E Ko, J Chan, N Kim, R Chiu, S Pang
    posted to cancer gene prostate by zkyken on 2007-06-05 04:30:01 as **
  • notes SNPs3D: Candidate gene and SNP selection for association studies
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Peng Yue, Eugene Melamud, John Moult
    posted to snp selection gene candidate by Zephyrus on 2008-07-17 03:26:49 as **** along with 3 people and 1 group jyuh massivemayhem cat_worth structural_bioinformatics
  • Reconstruction of gene networks using Bayesian learning and manipulation experiments
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2934-2942.
    by Iosifina Pournara, Lorenz Wernisch
    posted to network infer gene bayesian by Yumyai on 2008-04-26 17:38:32 as *** along with 3 people and 2 groups lfriedl wnpx aleks kdl Compilers
  • Gene prediction: compare and CONTRAST
    Genome Biology, Vol. 8, No. 12. (2007)
    by Paul Flicek
    posted to bg crf gene prediction svm by yoanjacquemin on 2008-01-15 08:18:00 as read along with 4 people Borelli alexl wenhan dewaldron
  • Gene structure prediction by linguistic methods
    (1994)
    by S Dong, D Searls
    posted to gene linguistics by YenHuaHuang on 2007-04-02 03:27:31 as read
  • Simple one-week method to construct gene-targeting vectors: application to production of human knockout cell lines.
    Biotechniques, Vol. 41, No. 3. (September 2006), pp. 311-316.
    by S Iiizumi, Y Nomura, S So, K Uegaki, K Aoki, K Shibahara, N Adachi, H Koyama
    posted to cells es gene method targeting by yeastyboy on 2006-11-20 16:03:20 as *** along with 2 people jyuh shimi002
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