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Ключевое слово gibbs [77 articles]

Recent papers classified by the tag gibbs.
  • Thermodynamic Inhibition Profile of a Cyclopentyl and a Cyclohexyl Derivative towards Thrombin: The Same but for Different Reasons13
    Angewandte Chemie International Edition, Vol. 46, No. 44. (2007), pp. 8511-8514.
    by Christof Gerlach, Michael Smolinski, Holger Steuber, Christoph a, Andreas Heine, David g, Gerhard Klebe
    posted to gibbs by trmr on 2008-07-02 16:49:11 as **
  • Explaining the Gibbs Sampler
    The American Statistician, Vol. 46, No. 3. (1992), pp. 167-174.
    by George Casella, Edward I George
    posted to gibbs sampler by thijswesterveld on 2007-05-01 15:07:24 as ** along with 7 people pcarbo abbie_riner bayes fishtank navil seitentaisei adamsi
  • Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment.
    Science, Vol. 262, No. 5131. (8 October 1993), pp. 208-214.
    by CE Lawrence, SF Altschul, MS Boguski, JS Liu, AF Neuwald, JC Wootton
    posted to gibbs by seitentaisei on 2008-01-18 17:42:46 as read along with 6 people wenhan dquest AaronDarling johncumbers jguinney xili03
  • A Generalized Markov Sampler
    Methodology And Computing In Applied Probability, Vol. 6, No. 1. (March 2004), pp. 29-53.
    by JM Keith, DP Kroese, D Bryant
    posted to gibbs mcmc by seitentaisei on 2008-01-24 23:10:55 as **
  • Using the Gibbs Motif Sampler for phylogenetic footprinting.
    Methods in molecular biology (Clifton, N.J.), Vol. 395 (2007), pp. 403-424.
    by W Thompson, S Conlan, LA McCue, CE Lawrence
    posted to self gibbs by sconlan on 2008-07-03 20:41:31 as read
  • A phylogenetic Gibbs sampler that yields centroid solutions for cis regulatory site prediction.
    Bioinformatics (8 May 2007)
    by Lee A A Newberg, William A A Thompson, Sean Conlan, Thomas M M Smith, Lee Ann A McCue, Charles E E Lawrence
    posted to self gibbs by sconlan on 2008-07-03 20:38:42 as read along with 3 people and 1 group siebert dpollard cjeans EisenLab
  • The Gibbs Centroid Sampler.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by WA Thompson, LA Newberg, S Conlan, LA McCue, CE Lawrence
    posted to self gibbs by sconlan on 2008-07-03 20:38:06 as read along with 1 person cabbagezs
  • Rhodopseudomonas palustris regulons detected by cross-species analysis of alphaproteobacterial genomes.
    Applied and environmental microbiology, Vol. 71, No. 11. (November 2005), pp. 7442-7452.
    by S Conlan, C Lawrence, LA McCue
    posted to self regulation gibbs environmental bacteria by sconlan on 2008-07-03 20:35:14 as read
  • Illustration of Bayesian Inference in Normal Data Models Using Gibbs Sampling
    Journal of the American Statistical Association, Vol. 85, No. 412. (1990), pp. 972-985.
    by Alan E Gelfand, Susan E Hills, Amy Racine-Poon, Adrian FM Smith
    posted to bayesian gibbs sampling statistics by plm on 2006-08-17 09:51:22 as ** along with 1 group SAA-HSA
  • AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules
    Computer Physics Communications, Vol. 91, No. 1-3. (2 September 1995), pp. 1-41.
    by David A Pearlman, David A Case, James W Caldwell, Wilson S Ross, Iii Cheatham, Steve Debolt, David Ferguson, George Seibel, Peter Kollman
    posted to amber field force gibbs model by papatonyhill on 2006-06-14 21:49:12 as **** along with 1 person gruppo
  • notes General atomic and molecular electronic structure system
    J. Comput. Chem., Vol. 14, No. 11. (November 1993), pp. 1347-1363.
    by Michael W Schmidt, Kim K Baldridge, Jerry A Boatz, Steven T Elbert, Mark S Gordon, Jan H Jensen, Shiro Koseki, Nikita Matsunaga, Kiet A Nguyen, Shujun Su, Theresa L Windus, Michel Dupuis, John A Montgomery
    posted to gamess gh1 gibbs by papatonyhill on 2006-09-26 02:20:13 as ** along with 2 people DanHickstein kimikazu
  • notes The Blue Obelisk-interoperability in chemical informatics.
    J Chem Inf Model, Vol. 46, No. 3. (n 2006), pp. 991-998.
    by R Guha, MT Howard, GR Hutchison, P Murray-Rust, H Rzepa, C Steinbeck, J Wegner, EL Willighagen
    posted to gibbs openbabel by papatonyhill on 2006-09-26 02:17:09 as read along with 3 people nicklynch dullhunk egonw
  • notes Binding MOAD (Mother Of All Databases).
    Proteins (21 June 2005)
    by Liegi Hu, Mark L L Benson, Richard D D Smith, Michael G G Lerner, Heather A A Carlson
    posted to gibbs moad by papatonyhill on 2006-09-26 02:15:43 as read along with 6 people and 10 groups higueruelo BragilMassoud sangeetha shantanu caporaso blackbart structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology biomedical-nlp insilicodrug
  • notes Force calculations in automated docking: enzyme-substrate interactions in Fusarium oxysporum Cel7B.
    Proteins, Vol. 61, No. 3. (15 November 2005), pp. 590-596.
    by C Mulakala, PJ Reilly
    posted to force gh1 gh7 gibbs by papatonyhill on 2006-09-26 02:14:16 as read
  • notes The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure.
    J Comput Aided Mol Des, Vol. 8, No. 3. (June 1994), pp. 243-256.
    by HJ Böhm
    posted to energy gibbs by papatonyhill on 2006-09-26 02:10:27 as read along with 4 people BragilMassoud nachtalp nickolay schlauchi
  • notes Specific empirical free energy function for automated docking of carbohydrates to proteins.
    J Comput Chem, Vol. 24, No. 14. (15 November 2003), pp. 1748-1757.
    by A Laederach, PJ Reilly
    posted to gh1 gibbs by papatonyhill on 2006-09-26 02:00:53 as read
  • notes Electrostatic effects in proteins: comparison of dielectric and charge models.
    Protein Eng, Vol. 4, No. 8. (December 1991), pp. 903-910.
    by EL Mehler, T Solmajer
    posted to electrostatic gibbs by papatonyhill on 2006-09-26 01:43:19 as read
  • A computational procedure for determining energetically favorable binding sites on biologically important macromolecules.
    J Med Chem, Vol. 28, No. 7. (July 1985), pp. 849-857.
    by PJ Goodford
    posted to gibbs by papatonyhill on 2006-09-26 01:40:41 as read along with 3 people tjimenez sim82 GermanErlenkamp
  • notes Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
    Journal of Computational Chemistry, Vol. 19, No. 14. (6 January 1999), pp. 1639-1662.
    by Garrett M Morris, David S Goodsell, Robert S Halliday, Ruth Huey, William E Hart, Richard K Belew, Arthur J Olson
    posted to autodock gh1 gibbs by papatonyhill on 2006-09-26 01:34:59 as read along with 12 people and 1 group simone andreramme LamBras dgruiz nachtalp P2324548 yongzhao peprovy tovrstra schlauchi carlescorbi middledomain TSRI_MGL
  • iGibbs: Improving Gibbs motif sampler for proteins by sequence clustering and iterative pattern sampling
    Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 3. (2007), pp. 671-681.
    by Sun Kim, Zhiping Wang, Mehmet Dalkilic
    posted to clustering gibbs by nklee on 2008-01-22 01:57:53 as **
  • A Comparative Study on Computational Two-Block Motif Detection: Algorithms and Applications.
    Mol Pharm (13 December 2007)
    by Chengpeng Bi, J S Leeder, Carrie A Vyhlidal
    posted to blocks discovery gibbs motif two by nklee on 2007-12-19 21:15:42 as ** along with 1 person maximilianh
  • Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes.
    Nucleic Acids Res, Vol. 29, No. 3. (1 February 2001), pp. 774-782.
    by L McCue, W Thompson, C Carmack, MP Ryan, JS Liu, V Derbyshire, CE Lawrence
    posted to gibbs phylogenetic sampling by nklee on 2008-01-22 00:36:18 as ** along with 2 people and 1 group dquest adepace EisenLab
  • Modelling spatially correlated data via mixtures: a Bayesian approach
    Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 64, No. 4. (2002), pp. 805-826.
    by Carmen Fernandez, Peter J Green
    posted to spatial_correlation mixtures gibbs by nalf on 2008-06-03 21:37:24 as **
  • Gibbs Sampling in Bayesian Networks
    Artificial Intelligence, Vol. 46, No. 3. (1990), pp. 351-363.
    by Tomas Hrycej
    posted to bayesian_network gibbs by naegele on 2007-12-20 10:27:00 as **
  • Metropolized independent sampling with comparisons to rejection sampling and importance sampling
    Statistics and Computing, Vol. 6, No. 2. (1 June 1996), pp. 113-119.
    by Jun S Liu
    posted to mcmc machine-learning gibbs by markusd on 2008-05-07 16:43:09 as ** along with 1 person pcarbo
  • Markov Chain Monte Carlo Method and Its Application
    by Stephen P Brooks
    posted to mcmc machine-learning gibbs by markusd on 2008-05-07 16:42:57 as ** along with 5 people delip microserf icosma alexv Xavier
  • Monte Carlo Sampling Methods Using Markov Chains and Their Applications
    Biometrika, Vol. 57, No. 1. (1970), pp. 97-109.
    by WK Hastings
    posted to mcmc machine-learning gibbs by markusd on 2008-05-07 16:42:48 as ** along with 4 people bfraser icosma rabio lcigler
  • Markov Chain Monte Carlo in Practice: A Roundtable Discussion
    The American Statistician, Vol. 52, No. 2. (1998), pp. 93-100.
    by Robert E Kass, Bradley P Carlin, Andrew Gelman, Radford M Neal
    posted to mcmc machine-learning gibbs by markusd on 2008-05-07 16:42:39 as ** along with 4 people jrblevin i-stevenson ddahlem icosma
  • Facilitating the Gibbs Sampler: The Gibbs Stopper and the Griddy-Gibbs Sampler
    Journal of the American Statistical Association, Vol. 87, No. 419. (1992), pp. 861-868.
    by Christian Ritter, Martin A Tanner
    posted to mcmc machine-learning gibbs by markusd on 2008-05-07 16:42:24 as ** along with 1 person icosma
  • Bayesian Statistics without Tears: A Sampling-Resampling Perspective
    The American Statistician, Vol. 46, No. 2. (1992), pp. 84-88.
    by AFM Smith, AE Gelfand
    posted to mcmc machine-learning gibbs by markusd on 2008-05-07 16:42:12 as ** along with 3 people frohike abbie_riner icosma
  • Bayesian Computation Via the Gibbs Sampler and Related Markov Chain Monte Carlo Methods
    by AFM Smith, GO Roberts
    posted to machine-learning gibbs by markusd on 2008-05-07 19:34:04 as ** along with 3 people delip pcarbo icosma
  • Analysis of a Gibbs sampler method for model-based clustering of gene expression data
    Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 176-183.
    by Anagha Joshi, Yves Van de Peer, Tom Michoel
    posted to analysis cluster data expression gibbs by maralena on 2008-01-31 17:24:02 as ** along with 3 people jyuh jfr dps
  • Gibbs Free Energy of Transfer of a Methylene Group in Buffer + Ionic Liquid Biphasic Systems
    Ind. Eng. Chem. Res. (17 May 2008)
    by Oscar Rodríguez, Pedro P Madeira, Eugénia A Macedo
    posted to transfer liquid ionic gibbs buffer biphasic by majdula on 2008-06-04 12:24:53 as ***
  • LOCAL COMPOSITION MODEL FOR THE EXCESS GIBBS ENERGY OF AQUEOUS ELECTROLYTE SYSTEMS.
    AIChE Journal, Vol. 32, No. 3. (1986), pp. 444-454.
    by Chau-Chyun Chen, LB Evans
    posted to thermodynamic phase gibbs excess equilibria enrtl electrolytes by majdula on 2008-04-29 10:33:36 as *****
  • Gibbs topological analysis for estimating phase equilibrium tie lines
    Fluid Phase Equilibria, Vol. 216, No. 1. (15 February 2004), pp. 159-165.
    by Sugata P Tan, Maciej Radosz
    posted to calculation equilibria gibbs by majdula on 2008-04-14 13:14:42 as ****
  • notes An Introduction to MCMC for Machine Learning
    Machine Learning, Vol. 50, No. 1. (1 January 2003), pp. 5-43.
    by Christophe Andrieu, Nando de Freitas, Arnaud Doucet, Michael I Jordan
    posted to gibbs by ldietz on 2007-05-25 13:14:02 as ** along with 9 people delip pdlug mshafiei wasteland93 bhaddow dowlingj markusd kozaki robotact
  • Calculating posterior distributions and modal estimates in Markov mixture models
    Journal of Econometrics, Vol. 75, No. 1. (November 1996), pp. 79-97.
    by Siddhartha Chib
    posted to gibbs by ldietz on 2008-04-18 16:39:31 as ** along with 1 person rharang
  • notes Monte Carlo Statistical Methods (Springer Texts in Statistics)
    (26 July 2005)
    by Christian P Robert, George Casella
    posted to gibbs mcmctheory by ldietz on 2007-10-30 11:12:59 as read along with 3 people robertlischke quianominorleo rds
  • Rao-Blackwellised Particle Filtering for Dynamic Bayesian Networks
    (2000), pp. 176-183.
    by Arnaud Doucet, Nando de Freitas, Kevin P Murphy, Stuart J Russell
    posted to gibbs by ldietz on 2006-12-07 17:43:56 as *
  • A practical sampling approach for a Bayesian mixture model with unknown number of components
    Statistical Papers, Vol. 48, No. 4. (28 October 2007), pp. 631-653.
    by Liqun Wang, James Fu
    posted to nonparametric hierarchical gibbs bayes by ldietz on 2008-07-03 22:26:48 as ** along with 1 person and 3 groups nojhan EvolutionaryComputation Metaheuristics Optimization
  • Markov Chain Sampling Methods for Dirichlet Process Mixture Models
    Journal of Computational and Graphical Statistics, Vol. 9, No. 2. (2000), pp. 249-265.
    by Radford M Neal
    posted to gibbs by ldietz on 2007-10-19 13:11:40 as **** along with 2 people mshafiei vlachmore
  • Understanding the Metropolis-Hastings Algorithm
    The American Statistician, Vol. 49, No. 4. (1995), pp. 327-335.
    by Siddhartha Chib, Edward Greenberg
    posted to gibbs by ldietz on 2007-09-03 16:29:55 as ** along with 11 people and 2 groups i-stevenson ansobol quianominorleo jrw rvosa nojhan markusd pcarbo icosma adriandefroment leonnovelo FAB-lab Metaheuristics
  • On Bayesian model and variable selection using MCMC
    Statistics and Computing, Vol. 12, No. 1. (1 January 2002), pp. 27-36.
    by Petros Dellaportas, Jonathan J Forster, Ioannis Ntzoufras
    posted to variableselection mcmctheory gibbs by ldietz on 2008-05-01 18:19:16 as ** along with 1 person ddahlem
  • Hyperparameter estimation in Dirichlet process mixture models
    by By Mike
    posted to dirichlet gibbs by ldietz on 2008-02-05 11:04:53 as **
  • notes Efficient Cosmological Parameter Estimation with Hamiltonian Monte Carlo
    (31 Aug 2006)
    by Amir Hajian
    posted to mcmctheory gibbs by ldietz on 2008-07-15 18:00:33 as ** along with 1 person proportional
  • Markov Chain Monte Carlo in Practice
    (01 December 1995)
    by WR Gilks
    posted to mcmctheory gibbs by ldietz on 2008-05-01 14:20:16 as read along with 12 people and 1 group przem markusd abbie_riner fredguilloux rpadams eme Borelli metamerist wasteland93 lcigler Xavier roys astro
  • Gibbs Recursive Sampler: finding transcription factor binding sites
    Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3580-3585.
    by William Thompson, Eric C Rouchka, Charles E Lawrence
    posted to gibbs sampler by johncumbers on 2006-07-15 16:55:18 as ***** along with 4 people lyongu dquest daniel_quest xiaobeizhao
  • A Gibbs Point Process for Road Extraction from Remotely Sensed Images
    Int. J. Comput. Vision, Vol. 57, No. 2. (May 2004), pp. 121-136.
    by Radu Stoica, Xavier Descombes, Josiane Zerubia
    posted to digitise extraction gibbs gis image process raster vector by jlancaster on 2007-04-24 02:39:49 as **
  • A Kinetic Model of Transcription Initiation by RNA Polymerase
    Journal of Molecular Biology, Vol. 378, No. 3. (2 May 2008), pp. 520-529.
    by Xiao-Chuan Xue, Fei Liu, Zhong-Can Ou-Yang
    posted to transcription promoter mathematical_model gibbs energy biophysics by jjray on 2008-05-05 20:46:17 as **
  • Gibbs measures on Brownian paths: Theory and applications
    (26 Apr 2004)
    by Volker Betz, Jozsef Lorinczi, Herbert Spohn
    posted to brownian_motion energy gibbs statistical_mechanics by jjray on 2008-03-28 18:43:19 as ** along with 1 person ansobol
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