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Ключевое слово haplotype [66 articles]

Recent papers classified by the tag haplotype.
  • A haplotype map of the human genome.
    Nature, Vol. 437, No. 7063. (27 October 2005), pp. 1299-1320.
    by D Altshuler, LD Brooks, A Chakravarti, FS Collins, MJ Daly, P Donnelly,
    posted to genomics haplotype by textoris on 2006-01-25 09:55:02 as read along with 11 people and 2 groups jermth eoghanharr Cortel pcahan1 cgasa tabu adepace djkt vplagnol ramensky jjannink EisenLab PROPOSED_CGASA
  • Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem.
    Brief Bioinform, Vol. 3, No. 1. (March 2002), pp. 23-31.
    by R Lippert, R Schwartz, G Lancia, S Istrail
    posted to distance error haplotype minimum reconstruction by tanyabw on 2008-01-20 19:26:53 as ** along with 1 group Bioinformatics
  • Meiotic crossover hotspots contained in haplotype block boundaries of the mouse genome.
    Proc Natl Acad Sci U S A (9 August 2007)
    by Liisa Kauppi, Maria Jasin, Scott Keeney
    posted to cross-over genome-wide haplotype meiosis by sebastien_vigneau on 2007-08-12 18:53:09 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • SNP-specific extraction of haplotype-resolved targeted genomic regions
    Nucl. Acids Res. (8 July 2008), gkn345.
    by Johannes Dapprich, Deborah Ferriola, Eleni E Magira, Mark Kunkel, Dimitri Monos
    posted to snp haplotype by sbozdag on 2008-07-08 18:59:14 as **
  • Linked vs. unlinked markers: multilocus microsatellite haplotype-sharing as a tool to estimate gene flow and introgression
    Molecular Ecology, Vol. 16, No. 2. (January 2007), pp. 243-256.
    by Wim J Koopman, Yinghui Li, Els Coart, Van DE Weg, W Eric, Ben Vosman, Isabel Roldan-Ruiz, Marinus J Smulders
    posted to landscape-genetics haplotype apple by rs on 2008-08-20 09:18:09 as read along with 1 person ArtemPankin
  • HapCUT: an efficient and accurate algorithm for the haplotype assembly problem
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i153-159.
    by Vikas Bansal, Vineet Bafna
    posted to haplotype assembly by Neeperando on 2008-08-25 15:09:02 as **
  • Association of adenomatous polyposis coli (APC) gene polymorphisms with autism spectrum disorder (ASD).
    Am J Med Genet B Neuropsychiatr Genet (12 January 2007)
    by Xiao-Lei L Zhou, Maibritt Giacobini, Britt-Marie M Anderlid, Henrik Anckarsäter, Davood Omrani, Christopher Gillberg, Magnus Nordenskjöld, Annika Lindblom
    posted to utr snp polymorphism haplotype gene autism apc by mgaldzic on 2007-01-17 20:04:56 as ** along with 1 group CHIP
  • Identification and functional significance of SNPs underlying conserved haplotype frameworks across ethnic populations.
    Pharmacogenet Genomics, Vol. 16, No. 9. (September 2006), pp. 667-682.
    by C Ouyang, TG Krontiris
    posted to snps haplotype functional ethnic by mgaldzic on 2007-01-15 20:01:29 as ** along with 1 group CHIP
  • Whole-Genome Patterns of Common DNA Variation in Three Human Populations
    Science, Vol. 307, No. 5712. (18 February 2005), pp. 1072-1079.
    by David A Hinds, Laura L Stuve, Geoffrey B Nilsen, Eran Halperin, Eleazar Eskin, Dennis G Ballinger, Kelly A Frazer, David R Cox
    posted to genome-wide haplotype human population snp by mercaptan on 2005-03-01 18:33:13 as **** along with 6 people and 1 group jshapiro akeyj saxonov Archaeogenetics hdopazo djkt BioinfoCIPF
  • The distribution of Quercus suber chloroplast haplotypes matches the palaeogeographical history of the western Mediterranean
    Molecular Ecology, Vol. 16, No. 24. (December 2007), pp. 5259-5266.
    by D Magri, S Fineschi, R Bellarosa, A Buonamici, F Sebastiani, B Schirone, MC Simeone, GG Vendramin
    posted to haplotype phylogeography by mbuhanan on 2008-03-20 20:08:12 as **
  • High variability of chloroplast DNA in three Mediterranean evergreen oaks indicates complex evolutionary history
    Heredity, Vol. 93, No. 5. (2004), pp. 510-515.
    by P Jimenez, Lopez U de Heredia, C Collada, Z Lorenzo, L Gil
    posted to chloroplast haplotype method by mbuhanan on 2008-03-20 23:49:58 as **
  • A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC
    Nature Genetics, Vol. 38, No. 10. (24 September 2006), pp. 1166-1172.
    by Paul IW de Bakker, Gil Mcvean, Pardis C Sabeti, Marcos M Miretti, Todd Green, Jonathan Marchini, Xiayi Ke, Alienke J Monsuur, Pamela Whittaker, Marcos Delgado, Jonathan Morrison, Angela Richardson, Emily C Walsh, Xiaojiang Gao, Luana Galver, John Hart, David A Hafler, Margaret Pericak-Vance, John A Todd, Mark J Daly, John Trowsdale, Cisca Wijmenga, Tim J Vyse, Stephan Beck, Sarah S Murray, Mary Carrington, Simon Gregory, Panos Deloukas, John D Rioux
    posted to snps haplotype disease association-studies by massivemayhem on 2007-01-18 10:59:51 as ** along with 1 person jermth
  • Genetic Analysis of Completely Sequenced Disease-Associated MHC Haplotypes Identifies Shuffling of Segments in Recent Human History.
    PLoS Genet, Vol. 2, No. 1. (27 January 2006)
    by James A A Traherne, Roger Horton, Anne N N Roberts, Marcos M M Miretti, Matthew E E Hurles, C Andrew A Stewart, Jennifer L L Ashurst, Alexey M M Atrazhev, Penny Coggill, Sophie Palmer, Jeff Almeida, Sarah Sims, Laurens G G Wilming, Jane Rogers, Pieter J J de Jong, Mary Carrington, John F F Elliott, Stephen Sawcer, John A A Todd, John Trowsdale, Stephan Beck
    posted to autoimmune haplotype mhc by lhonigberg on 2006-01-28 23:02:08 as **
  • Combined haplotype relative risk (CHRR): a general and simple genetic association test that combines trios and unrelated case-controls.
    Genetic epidemiology (17 July 2008)
    by Chao-Yu Y Guo, Kathryn L L Lunetta, Anita L L Destefano, L Adrienne A Cupples
    posted to haplotype by jyuh on 2008-07-25 06:26:41 as **
  • CLUMPHAP: a simple tool for performing haplotype-based association analysis.
    Genetic epidemiology (7 April 2008)
    by Jo Knight, David Curtis, Pak C C Sham
    posted to software haplotype by jyuh on 2008-07-13 14:06:19 as **
  • Penalized estimation of haplotype frequencies.
    Bioinformatics (Oxford, England), Vol. 24, No. 14. (15 July 2008), pp. 1596-1602.
    by KL Ayers, K Lange
    posted to haplotype by jyuh on 2008-07-16 14:38:37 as **
  • HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling
    Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3048-3055.
    by Bonnie Kirkpatrick, Carlos S Armendariz, Richard M Karp, Eran Halperin
    posted to software pooling haplotype by jyuh on 2008-07-16 14:34:59 as ** along with 1 person ryanraaum
  • PoooL: An efficient method for estimating haplotype frequencies from large DNA pools.
    Bioinformatics (Oxford, England) (23 June 2008)
    by Han Zhang, Hsin-Chou C Yang, Yaning Yang
    posted to software snp pooling haplotype by jyuh on 2008-07-16 14:31:07 as **
  • Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering.
    American journal of human genetics, Vol. 81, No. 5. (November 2007), pp. 1084-1097.
    by SR Browning, BL Browning
    posted to wga software missing haplotype by jyuh on 2008-07-25 05:43:12 as **
  • HaploSNPer: a web-based allele and SNP detection tool
    BMC Genetics, Vol. 9 (28 February 2008), 23.
    by Jifeng Tang, Jack AM Leunissen, Roeland E Voorrips, Gerard C van der Linden, Ben Vosman
    posted to snp haplotype by jyuh on 2008-03-16 02:57:41 as **
  • hapConstructor: automatic construction and testing of haplotypes in a Monte Carlo framework.
    Bioinformatics (Oxford, England) (23 July 2008)
    by Ryan Abo, Stacey Knight, Jathine Wong, Angela Cox, Nicola J J Camp
    posted to software haplotype by jyuh on 2008-08-01 03:38:01 as **
  • Efficient multilocus association testing for whole genome association studies using localized haplotype clustering.
    Genetic epidemiology, Vol. 31, No. 5. (July 2007), pp. 365-375.
    by BL Browning, SR Browning
    posted to wga software haplotype by jyuh on 2008-07-25 05:30:49 as **
  • MOCSphaser: a haplotype inference tool from a mixture of copy number variation and single nucleotide polymorphism data.
    Bioinformatics (Oxford, England), Vol. 24, No. 14. (15 July 2008), pp. 1645-1646.
    by M Kato, Y Nakamura, T Tsunoda
    posted to software haplotype cnv by jyuh on 2008-07-25 08:36:38 as **
  • A model of higher accuracy for the individual haplotyping problem based on weighted SNP fragments and genotype with errors
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i105-113.
    by Minzhu Xie, Jianxin Wang, Jianer Chen
    posted to snp haplotype by jyuh on 2008-07-25 07:54:01 as ** along with 1 person raistrick
  • Statistical performance of cladistic strategies for haplotype grouping in pharmacogenetics.
    Statistics in medicine (11 August 2008)
    by Jared K K Lunceford, Nancy Liu
    posted to pharmacogenetics haplotype by jyuh on 2008-08-16 09:17:02 as **
  • SNP-specific extraction of haplotype-resolved targeted genomic regions.
    Nucleic acids research (8 July 2008)
    by Johannes Dapprich, Deborah Ferriola, Eleni E E Magira, Mark Kunkel, Dimitri Monos
    posted to snp haplotype extraction by jyuh on 2008-07-15 15:54:27 as **
  • Genotype, haplotype and copy-number variation in worldwide human populations
    Nature, Vol. 451, No. 7181. (21 February 2008), pp. 998-1003.
    by Mattias Jakobsson, Sonja W Scholz, Paul Scheet, Raphael J Gibbs, Jenna M Vanliere, Hon-Chung Fung, Zachary A Szpiech, James H Degnan, Kai Wang, Rita Guerreiro, Jose M Bras, Jennifer C Schymick, Dena G Hernandez, Bryan J Traynor, Javier Simon-Sanchez, Mar Matarin, Angela Britton, Joyce van de Leemput, Ian Rafferty, Maja Bucan, Howard M Cann, John A Hardy, Noah A Rosenberg, Andrew B Singleton
    posted to snp haplotype cnv by jyuh on 2008-07-25 06:35:20 as ** along with 7 people and 1 group frohike jo_davies Archaeogenetics djkt ramensky mailund thomaskelder Fasting, food and evolution
  • Robust estimation and testing of haplotype effects in case-control studies.
    Genetic epidemiology, Vol. 32, No. 1. (January 2008), pp. 29-40.
    by AS Allen, GA Satten
    posted to haplotype by jyuh on 2008-07-25 16:04:59 as **
  • Haplotypic analysis of Wellcome Trust Case Control Consortium data
    Human Genetics, Vol. 123, No. 3. (April 2008), pp. 273-280.
    by Browning, Brian, Browning, Sharon
    posted to software haplotype gwa by jyuh on 2008-07-25 02:26:24 as **
  • Haplotype associations with quantitative traits in the presence of complex multilocus and heterogeneous effects.
    Genetic epidemiology (17 July 2008)
    by Kyoko Shibata, Luda Diatchenko, Dmitri V V Zaykin
    posted to qtl haplotype gne-gene by jyuh on 2008-07-30 15:32:43 as **
  • A forest-based approach to identifying gene and gene gene interactions
    Proceedings of the National Academy of Sciences (28 November 2007), 0709868104.
    by Xiang Chen, Ching-Ti Liu, Meizhuo Zhang, Heping Zhang
    posted to software haplotype genetics gene-gene forest by jyuh on 2008-03-19 09:25:21 as ** along with 5 people balicea cjeans zwang xingxu hpaces
  • Association between Angiotensin-Converting Enzyme Gene Polymorphisms and Diabetic Nephropathy: Case-Control, Haplotype, and Family-Based Study in Three European Populations.
    J Am Soc Nephrol (21 March 2007)
    by Samy Hadjadj, Lise Tarnow, Carol Forsblom, Gbenga Kazeem, Michel Marre, Per-Henrik H Groop, Hans-Henrik H Parving, François Cambien, David A A Tregouet, Ivo G G Gut, Alexandre Théva, Dominique Gauguier, Martin Farrall, Roger Cox, Fumihiko Matsuda, Mark Lathrop, Nathalie Hager-Vionnet
    posted to snp ras haplotype dn by jyuh on 2007-06-14 03:43:29 as ** along with 1 person Terkko
  • An Algorithm for Inferring Complex Haplotypes in a Region of Copy-Number Variation.
    American journal of human genetics (16 July 2008)
    by Mamoru Kato, Yusuke Nakamura, Tatsuhiko Tsunoda
    posted to haplotype cnv by jyuh on 2008-07-25 06:53:12 as **
  • Retrospective analysis of haplotype-based case control studies under a flexible model for gene environment association.
    Biostatistics (Oxford, England), Vol. 9, No. 1. (January 2008), pp. 81-99.
    by YH Chen, N Chatterjee, RJ Carroll
    posted to haplotype gene-environment by jyuh on 2008-08-05 09:42:18 as **
  • Ongoing Adaptive Evolution of ASPM, a Brain Size Determinant in Homo sapiens
    Science, Vol. 309, No. 5741. (09 September 2005), pp. 1720-1722.
    by Nitzan Mekel-Bobrov, Sandra L Gilbert, Patrick D Evans, Eric J Vallender, Jeffrey R Anderson, Richard R Hudson, Sarah A Tishkoff, Bruce T Lahn
    posted to brain evolution haplotype selection by JAShapiro on 2005-09-18 20:48:13 as read along with 6 people and 1 group bpcusack stevanspringer Wabin grzegorz balajis chrys FAB-lab
  • Microcephalin, a Gene Regulating Brain Size, Continues to Evolve Adaptively in Humans
    Science, Vol. 309, No. 5741. (09 September 2005), pp. 1717-1720.
    by Patrick D Evans, Sandra L Gilbert, Nitzan Mekel-Bobrov, Eric J Vallender, Jeffrey R Anderson, Leila M Vaez-Azizi, Sarah A Tishkoff, Richard R Hudson, Bruce T Lahn
    posted to brain haplotype selection by JAShapiro on 2005-09-19 17:40:31 as read along with 7 people and 2 groups bpcusack stevanspringer grzegorz cgreal balajis Archaeogenetics cmm CGREL FAB-lab
  • DNA polymorphisms and haplotypes in the 5'-upstream region of the ABO blood group gene
    Legal Medicine, Vol. 8, No. 2. (March 2006), pp. 121-127.
    by Tatsuyuki Okiura, Hiroaki Nishimukai, Koji Nishimura, Chitoshi Orimoto, Yasuo Fukumori
    posted to blood-group haplotype by dchughes to the group G4ID on 2006-02-18 14:37:44 as ** along with 1 group Genetics-of-Gambling
  • Determination of haplotypes from single DNA molecules: a method for single-molecule barcoding
    Human Mutation, Vol. 28, No. 9. (2007), pp. 913-921.
    by Ming Xiao, Matthew P Gordon, Angie Phong, Connie Ha, Ting-Fung Chan, Dongmei Cai, Paul R Selvin, Pui-Yan Kwok
    posted to snps haplotype by dchughes to the group G4ID on 2007-07-28 11:22:16 as ** along with 1 group Genetics-of-Gambling
  • Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in rice
    Genome Res., Vol. 16, No. 5. (1 May 2006), pp. 618-626.
    by Guangming He, Xiaojin Luo, Feng Tian, Kegui Li, Zuofeng Zhu, Wei Su, Xiaoyin Qian, Yongcai Fu, Xiangkun Wang, Chuanqing Sun, Jinshui Yang
    posted to genomics expression gene genetics structure haplotype qtl rice by bsmagic to the group Bioinformatics on 2006-07-28 05:27:49 as ** along with 1 group bioinplant
  • From the Cover: Gene movement by Helitron transposons contributes to the haplotype variability of maize
    PNAS, Vol. 102, No. 25. (21 June 2005), pp. 9068-9073.
    by Jinsheng Lai, Yubin Li, Joachim Messing, Hugo K Dooner
    posted to gene haplotype helitron maize movement plant transposon by bsmagic to the group Bioinformatics on 2006-07-28 05:11:16 as ** along with 1 group bioinplant
  • A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase.
    Am J Hum Genet, Vol. 78, No. 4. (April 2006), pp. 629-644.
    by P Scheet, M Stephens
    posted to fastphase haplotype by lconde to the group BioinfoCIPF on 2006-07-21 18:05:15 as **
  • A linear-time algorithm for the perfect phylogeny haplotyping (PPH) problem.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 522-553.
    by Z Ding, V Filkov, D Gusfield
    posted to haplotype pph by lconde to the group BioinfoCIPF on 2006-07-21 18:02:36 as **
  • TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2130-2132.
    by D Posada, TJ Maxwell, AR Templeton
    posted to genotype haplotype phenotype trees by fisherp on 2006-03-27 14:05:03 as *** along with 1 person qfwills
  • A second generation human haplotype map of over 3.1 million SNPs
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 851-861.
    posted to haplotype human-variation snps by dchughes on 2007-10-18 12:03:19 as ** along with 10 people and 2 groups mfm11 skumagai jasonflannick jyuh djkt frohike lp2 ryanraaum xingxu psique parkinson's disease references Bioinformatics
  • Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi
    Genome Res., Vol. 17, No. 7. (2007), pp. 1101-1110.
    by HK Jong, MS Waterman, LM Li
    posted to diploid genome haplotype by bpb on 2007-09-05 12:41:21 as ** along with 1 person nhp
  • Haplotype homozygosity and derived alleles in the human genome.
    Am J Hum Genet, Vol. 78, No. 6. (June 2006), pp. 1053-1059.
    by AE Fry, CJ Trafford, MA Kimber, MS Chan, KA Rockett, DP Kwiatkowski
    posted to alelle derived diversity haplotype selection snp by bpb on 2007-11-06 14:58:20 as ** along with 2 people balajis ashandanj
  • The International HapMap Project: The International HapMap Consortium
    Nature, Vol. 426, No. 6968. (2003), pp. 789-796.
    posted to genome haplotype hapmap human variation by bpb on 2007-08-29 15:15:41 as **
  • Constrained hidden Markov models for population-based haplotyping.
    BMC Bioinformatics, Vol. 8 Suppl 2 (2007)
    by N Landwehr, T Mielikäinen, L Eronen, H Toivonen, H Mannila
    posted to haplotype population by Ayest on 2007-06-11 08:55:21 as **
  • Prion gene haplotypes of U.S. cattle
    BMC Genetics, Vol. 7 (08 November 2006), 51.
    by Michael L Clawson, Michael P Heaton, John W Keele, Timothy PL Smith, Gregory P Harhay, William W Laegreid
    posted to bovin haplotype prp by Ayest on 2006-11-15 08:05:30 as **
  • Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies.
    Genome Res, Vol. 14, No. 5. (May 2004), pp. 908-916.
    by K Zhang, ZS Qin, JS Liu, T Chen, MS Waterman, F Sun
    posted to snp haplotype association by Ayest on 2007-01-17 16:21:42 as **
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