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Ключевое слово illumina [42 articles]

Recent papers classified by the tag illumina.
  • SeqMap : mapping massive amount of oligonucleotides to the genome
    Bioinformatics (12 August 2008), btn429.
    by Hui Jiang, Wing H Wong
    posted to soap rmap illumina eland aligments by Zigster on 2008-10-07 15:57:02 as ** along with 5 people nuin pengchy cthachuk GeeSharpMinor waszak
  • Statistical issues in the analysis of Illumina data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Mark Dunning, Nuno B Morais, Andy Lynch, Simon Tavare, Matthew Ritchie
    posted to illumina microarray statistics by thomaskelder on 2008-02-07 08:37:13 as **** along with 7 people and 1 group heliopais neveaire RockHI stajich srp33 jyuh Stew Berkeley Mycology
  • ZOOM! Zillions Of Oligos Mapped
    Bioinformatics (6 August 2008), btn416.
    by Hao Lin, Zefeng Zhang, Michael Q Zhang, Bin Ma, Ming Li
    posted to illumina mapping oligos software solexa zoom by Stew on 2008-08-08 13:40:14 as ** along with 2 people umit Neeperando
  • Illumina universal bead arrays.
    Methods Enzymol, Vol. 410 (2006), pp. 57-73.
    by JB Fan, KL Gunderson, M Bibikova, JM Yeakley, J Chen, E Wickham Garcia, LL Lebruska, M Laurent, R Shen, D Barker
    posted to beadarray illumina microarray by Stew on 2008-08-05 14:04:31 as ** along with 2 people and 1 group stsaft jeremymiller GeschwindLab
  • lumi: a pipeline for processing Illumina microarray.
    Bioinformatics (Oxford, England) (8 May 2008)
    by Pan Du, Warren A A Kibbe, Simon M M Lin
    posted to illumina lumi microarray by Stew on 2008-08-04 17:26:29 as ** along with 3 people heliopais jfr jyuh
  • High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
    Nature Genetics, Vol. 40, No. 8. (27 July 2008), pp. 987-993.
    by Kathryn E Holt, Julian Parkhill, Camila J Mazzoni, Philippe Roumagnac, François-Xavier Weill, Ian Goodhead, Richard Rance, Stephen Baker, Duncan J Maskell, John Wain, Christiane Dolecek, Mark Achtman, Gordon Dougan
    posted to bacteria evolution genome high-throughput illumina sequencing solexa variation by Stew on 2008-08-07 09:19:20 as ** along with 1 person aconesa
  • beadarray: R classes and methods for Illumina bead-based data
    Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2183-2184.
    by Mark J Dunning, Mike L Smith, Matthew E Ritchie, Simon Tavare
    posted to beadarray illumina r by Stew on 2008-08-04 17:27:25 as ** along with 4 people heliopais raylim srp33 jyuh
  • Spike-in validation of an Illumina-specific variance-stabilizing transformation.
    BMC research notes, Vol. 1 (2008)
    by MJ Dunning, ME Ritchie, NL Barbosa-Morais, S Tavaré, AG Lynch
    posted to beadarray illumina microarray spike-in stabilization variance vst by Stew on 2008-08-22 09:11:39 as **
  • Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome.
    Current biology : CB, Vol. 18, No. 10. (20 May 2008), pp. 758-762.
    by C Addo-Quaye, TW Eshoo, DP Bartel, MJ Axtell
    posted to bioinformatics illumina methods mirna sequencing sirna smallrna solexa by stajich on 2008-06-13 01:19:25 as ** along with 1 group Berkeley Mycology
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
    posted to 454 genome illumina nextgensequencing sequencing solexa by stajich on 2008-06-02 20:17:41 as ** along with 12 people and 1 group kintoki tmmurali reyez lp2 GustavoLacerda tharris balicea caseybrown dchughes hpaces serdarbozdag jfr Berkeley Mycology
  • notes IlluminaGUI: Graphical User Interface for analyzing gene expression data generated on the Illumina platform
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1431-1433.
    by Joachim L Schultze, Daniela Eggle
    posted to application expression gene illumina by RockHI on 2007-06-21 15:33:04 as ** along with 3 people caldavis jfr jyuh
  • Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms
    Nucleic Acids Research, Vol. 33, No. 18. (2005), pp. 5914-5923.
    by Michael Barnes, Johannes Freudenberg, Susan Thompson, Bruce Aronow, Paul Pavlidis
    posted to affy illumina microarray by raylim on 2008-06-10 21:44:52 as ** along with 1 person heliopais
  • On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation
    Biology Direct, Vol. 3 (03 June 2008), 23.
    by Wing-Cheong Wong, Marie Loh, Frank Eisenhaber
    posted to analysis illumina microarray by ptrobajo on 2008-06-18 13:38:15 as ** along with 3 people heliopais jyuh jfr
  • SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.
    Nat Methods (24 February 2008)
    by Curtis P P Van Tassell, Timothy P L P Smith, Lakshmi K K Matukumalli, Jeremy F F Taylor, Robert D D Schnabel, Cynthia Taylor T Lawley, Christian D D Haudenschild, Stephen S S Moore, Wesley C C Warren, Tad S S Sonstegard
    posted to illumina_sequencing illumina bioinformatics by orzenil on 2008-09-03 16:27:26 as ** along with 2 people lpanunzi jyuh
  • Extending microarray quality control and analysis algorithms to illumina chip platform.
    Conf Proc IEEE Eng Med Biol Soc, Vol. 1 (2007), pp. 4637-4640.
    by TH Stokes, X Han, RA Moffitt, MD Wang
    posted to affymetrix hybridisation illumina microarray oligonucleotide primer-design signal-intensity temperature thermodynamics by niallhaslam on 2007-11-29 10:31:45 as *** along with 1 person flexer
  • A genotype calling algorithm for the Illumina BeadArray platform
    Bioinformatics, Vol. 23, No. 20. (15 October 2007), pp. 2741-2746.
    by Yik Y Teo, Michael Inouye, Kerrin S Small, Rhian Gwilliam, Panagiotis Deloukas, Dominic P Kwiatkowski, Taane G Clark
    posted to illumina resequencing sequencing short-read signal-intensity by niallhaslam on 2007-11-12 09:57:22 as *** along with 2 people flexer debasis
  • Model-based variance-stabilizing transformation for Illumina microarray data
    Nucl. Acids Res. (4 January 2008), gkm1075.
    by Simon M Lin, Pan Du, Wolfgang Huber, Warren A Kibbe
    posted to illumina by neveaire on 2008-01-25 02:23:11 as ***** along with 2 people jfr jyuh
  • Microarray data analysis and mining approaches
    Brief Funct Genomic Proteomic (22 January 2008), elm034.
    by Francesca Cordero, Marco Botta, Raffaele A Calogero
    posted to illumina by neveaire on 2008-01-31 23:15:12 as ** along with 3 people jyuh jfr fishtank
  • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    Nature (18 May 2008)
    by Brian T Wilhelm, Samuel Marguerat, Stephen Watt, Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J Penkett, Jane Rogers, Jürg Bähler
    posted to illumina mrna-seq rna sequencing solexa transcriptome by myourshaw on 2008-07-18 17:54:02 as ** along with 7 people and 1 group michaelbarton caseybrown djkt jonathanjacobs GeeSharpMinor jyuh semrich Molecular Biology
  • The beginning of the end for microarrays?
    Nat Meth, Vol. 5, No. 7. (July 2008), pp. 585-587.
    by Jay Shendure
    posted to abi illumina sequencing solexa solid transcriptome by myourshaw on 2008-07-18 17:42:19 as ** along with 5 people ChrisEvelo megraw kengg marck kintoki
  • Mapping and quantifying mammalian transcriptomes by RNA-Seq.
    Nature methods (30 May 2008)
    by Ali Mortazavi, Brian A A Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold
    posted to illumina rna sequencing solexa transcriptome by myourshaw on 2008-07-18 17:47:28 as ** along with 10 people tmcphillips jfr vplagnol megraw GeeSharpMinor caseybrown xingxu jyuh shurjo gdb
  • Molecular biology: Power sequencing
    Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1197-1198.
    by Brenton R Graveley
    posted to illumina mrna-seq rna sequencing solexa solid transcriptome by myourshaw on 2008-07-18 17:51:07 as ** along with 5 people GustavoLacerda megraw dullhunk reyez GeeSharpMinor
  • Profiling alternative splicing on fiber-optic arrays.
    Nat Biotechnol, Vol. 20, No. 4. (April 2002), pp. 353-358.
    by JM Yeakley, JB Fan, D Doucet, L Luo, E Wickham, Z Ye, MS Chee, XD Fu
    posted to alternative assay illumina ligation splicing by mimulus_99 on 2007-12-04 00:47:15 as read
  • Gene expression patterns in blood leukocytes discriminate patients with acute infections.
    Blood (14 November 2006)
    by Octavio Ramilo, Windy Allman, Wendy Chung, Asuncion Mejias, Monica Ardura, Casey Glaser, Knut M M Wittkowski, Bernard Piqueras, Jacques Banchereau, Anna Karolina K Palucka, Damien Chaussabel
    posted to affymetrix blood expression illumina by mgaldzic on 2006-12-04 02:35:19 as ** along with 1 group CHIP
  • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    Genome Res. (11 June 2008), gr.079558.108.
    by John Marioni, Cristopher Mason, Shrikant Mane, Matthew Stephens, Yoav Gilad
    posted to illumina microarray sequencing by lusk on 2008-06-19 19:17:06 as ** along with 16 people and 1 group dakelley caseybrown Ema balicea vega semrich vmarshal fpattyn stajich giovanni ela503 Stew jyuh kengg shurjo GustavoLacerda Berkeley Mycology
  • GenoSNP: a Variational Bayes within-sample SNP genotyping algorithm that does not require a reference population.
    Bioinformatics (Oxford, England) (24 July 2008)
    by Eleni Giannoulatou, Christopher Yau, Stefano Colella, Jiannis Ragoussis, Christopher C C Holmes
    posted to bayes illumina microarray snp by jyuh on 2008-07-31 05:46:15 as **
  • Quantitative expression profiling of highly degraded RNA from formalin-fixed, paraffin-embedded breast tumor biopsies by oligonucleotide microarrays
    Laboratory Investigation, Vol. aop, No. current.
    by Maria Ravo, Margherita Mutarelli, Lorenzo Ferraro, Olì, Ornella Paris, Roberta Tarallo, Alessandra Vigilante, Daniela Cimino, Michele De Bortoli, Ernesto Nola, Luigi Cicatiello, Alessandro Weisz
    posted to microarray illumina ffpe by jyuh on 2008-05-01 10:57:18 as ** along with 1 person jfr
  • An overview of image-processing methods for Affymetrix GeneChips.
    Brief Bioinform (5 December 2007)
    by Jose M M Arteaga-Salas, Harry Zuzan, William B B Langdon, Graham J G J Upton, Andrew P P Harrison
    posted to microarray illumina by jyuh on 2008-09-27 11:07:31 as ** along with 3 people jfr aswin yevishere
  • Enhanced identification and biological validation of differential gene expression via Illumina whole-genome expression arrays through the use of the model-based background correction methodology
    Nucl. Acids Res., Vol. 36, No. 10. (1 June 2008), e58.
    by Liang-Hao Ding, Yang Xie, Seongmi Park, Guanghua Xiao, Michael D Story
    posted to illumina r by jyuh on 2008-06-11 07:43:04 as **
  • Optimization of RNA extraction from FFPE tissues for expression profiling in the DASL assay.
    BioTechniques, Vol. 44, No. 3. (March 2008), pp. 417-423.
    by M Abramovitz, M Ordanic-Kodani, Y Wang, Z Li, C Catzavelos, M Bouzyk, GW Sledge, CS Moreno, B Leyland-Jones
    posted to microarray illumina ffpe by jyuh on 2008-05-01 10:56:56 as **
  • nuID: A universal naming schema of oligonucleotides for Illumina, Affymetrix, and other microarrays
    Biology Direct, Vol. 2 (31 May 2007), 16.
    by Pan Du, Warren A Kibbe, Simon M Lin
    posted to affy illumina name r by jyuh on 2008-07-14 04:21:47 as ** along with 2 people heliopais jfr
  • Gene expression profiles in formalin-fixed, paraffin-embedded tissues obtained with a novel assay for microarray analysis.
    Clinical chemistry, Vol. 50, No. 12. (December 2004), pp. 2384-2386.
    by M Bibikova, JM Yeakley, E Chudin, J Chen, E Wickham, J Wang-Rodriguez, JB Fan
    posted to microarray illumina ffpe by jyuh on 2008-09-28 02:30:24 as **
  • Performance of Amplified DNA in an Illumina GoldenGate BeadArray Assay.
    Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, Vol. 17, No. 7. (July 2008), pp. 1781-1789.
    by JM Cunningham, TA Sellers, JM Schildkraut, ZS Fredericksen, RA Vierkant, LE Kelemen, M Gadre, CM Phelan, Y Huang, JG Meyer, VS Pankratz, EL Goode
    posted to gwa illumina wga by jyuh on 2008-07-25 07:26:58 as **
  • IGG: A Tool to Integrate GeneChips for Genetic Studies
    Bioinformatics (14 September 2007), btm458.
    by Li Miao-Xin, Jiang Lin, Ho, Song You-Qiang, Sham
    posted to affy illumina by jyuh on 2008-03-16 03:06:50 as ** along with 1 person rdiaz
  • A highly standardized, robust, and cost-effective method for genome-wide transcriptome analysis of peripheral blood applicable to large-scale clinical trials.
    Genomics, Vol. 87, No. 5. (May 2006), pp. 653-664.
    by S Debey, T Zander, B Brors, A Popov, R Eils, JL Schultze
    posted to affy illumina microarray_technology by jfr on 2007-01-10 11:27:13 as ** along with 1 person and 1 group mgaldzic CHIP
  • Reliable High-Throughput Genotyping and Loss-of-Heterozygosity Detection in Formalin-Fixed, Paraffin-Embedded Tumors Using Single Nucleotide Polymorphism Arrays
    Cancer Res, Vol. 65, No. 22. (15 November 2005), pp. 10188-10191.
    by Esther H Lips, Jan W Dierssen, Ronald van Eijk, Jan Oosting, Paul H Eilers, Rob A Tollenaar, Eelco J de Graaf, Van't, Cisca Wijmenga, Hans Morreau, Tom van Wezel
    posted to ffpe illumina snp-arrays by jfr on 2008-02-11 12:04:18 as read along with 1 person cpnP
  • High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping.
    Genome Res, Vol. 16, No. 9. (September 2006), pp. 1136-1148.
    by DA Peiffer, JM Le, FJ Steemers, W Chang, T Jenniges, F Garcia, K Haden, J Li, CA Shaw, J Belmont, SW Cheung, RM Shen, DL Barker, KL Gunderson
    posted to copy-number illumina microarray_technology by jfr on 2008-03-17 15:33:36 as read along with 1 person jackjackjjj
  • QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data.
    Nucleic Acids Res (27 March 2007)
    by Stefano Colella, Christopher Yau, Jennifer M M Taylor, Ghazala Mirza, Helen Butler, Penny Clouston, Anne S S Bassett, Anneke Seller, Christopher C C Holmes, Jiannis Ragoussis
    posted to copy-number genotyping illumina snp-arrays by jfr on 2008-02-11 12:22:30 as *** along with 3 people and 2 groups waszak psique caldavis parkinson's disease references Bioinformatics
  • Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays.
    Am J Pathol, Vol. 165, No. 5. (November 2004), pp. 1799-1807.
    by M Bibikova, D Talantov, E Chudin, JM Yeakley, J Chen, D Doucet, E Wickham, D Atkins, D Barker, M Chee, Y Wang, JB Fan
    posted to ffpe illumina microarray_technology by jfr on 2007-01-10 10:27:35 as read along with 1 person stsaft
  • Decoding randomly ordered DNA arrays.
    Genome Res, Vol. 14, No. 5. (May 2004), pp. 870-877.
    by KL Gunderson, S Kruglyak, MS Graige, F Garcia, BG Kermani, C Zhao, D Che, T Dickinson, E Wickham, J Bierle, D Doucet, M Milewski, R Yang, C Siegmund, J Haas, L Zhou, A Oliphant, JB Fan, S Barnard, MS Chee
    posted to illumina microarray by jeremymiller on 2006-11-14 01:03:53 as ** along with 1 group GeschwindLab
  • A novel, high-performance random array platform for quantitative gene expression profiling.
    Genome Research, Vol. 14, No. 11. (1 November 2004), pp. 2347-2356.
    by K Kuhn, SC Baker, E Chudin, MH Lieu, S Oeser, H Bennett, P Rigault, D Barker, TK Mcdaniel, MS Chee
    posted to microarray illumina by heliopais on 2008-10-09 10:26:22 as ** along with 1 person bertelsen
  • Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation
    Science, Vol. 319, No. 5866. (22 February 2008), pp. 1100-1104.
    by Jun Z Li, Devin M Absher, Hua Tang, Audrey M Southwick, Amanda M Casto, Sohini Ramachandran, Howard M Cann, Gregory S Barsh, Marcus Feldman, Luigi L Cavalli-Sforza, Richard M Myers
    posted to 23andme 650000_snps autosomal ceph human_genome_diversity_project illumina by Archaeogenetics on 2008-07-06 23:12:35 as ***** along with 11 people and 1 group Zephyrus cgravlee echinotrix EsepBib ramensky zwang qwermish xingxu mailund Dorkins adacier Roswell Cancer Crosstalk
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