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Ключевое слово module [113 articles]

Recent papers classified by the tag module.
  • Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Itai Yanai, Ryan L Baugh, Jessica J Smith, Casey Roehrig, Shai S Shen-Orr, Julia M Claggett, Andrew A Hill, Donna K Slonim, Craig P Hunter
    posted to geneexpression module regulatory by zwang on 2008-02-17 10:41:25 as ** along with 1 person roys
  • From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions
    Mol Syst Biol, Vol. 4 (15 July 2008)
    by Igor Ulitsky, Tomer Shlomi, Martin Kupiec, Ron Shamir
    posted to genetic interaction module by zwang on 2008-07-22 06:55:53 as ** along with 2 people roys ptrobajo
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
    posted to alignment hmm modeling module regulatory by zwang on 2007-12-10 04:29:31 as *** along with 7 people and 2 groups ana dpollard cjeans maximilianh hpaces Ema uwe EisenLab cis-regulatory-evolution
  • Distributed modules for text annotation and IE applied to the biomedical domain
    International Journal of Medical Informatics, Vol. In Press, Corrected Proof
    by Harald Kirsch, Sylvain Gaudan, Dietrich Rebholz-Schuhmann
    posted to component ie java module ner textmining by yggdrasil on 2008-04-23 10:30:26 as ** along with 3 people and 2 groups irenas yas gaudan dbk-lab T_lab
  • Transcriptional Regulation by Competing Transcription Factor Modules
    PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e164.
    by Rutger Hermsen, Sander Tans, Ten
    posted to gene module network regulation by wnpx on 2007-01-06 18:22:41 as ** along with 3 people nirfriedman zwang nklee
  • Computational discovery of gene modules and regulatory networks.
    Nat Biotechnol, Vol. 21, No. 11. (November 2003), pp. 1337-1342.
    by Z Bar-Joseph, GK Gerber, TI Lee, NJ Rinaldi, JY Yoo, F Robert, DB Gordon, E Fraenkel, TS Jaakkola, RA Young, DK Gifford
    posted to gene module network regulation by wnpx on 2006-01-03 18:45:33 as ** along with 12 people and 1 group ggrot dragonrez bayesian nickluscombe koller frohike karfunkel roys dquest balicea carlk tvdbulck EBI-regulation
  • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 166-176.
    by E Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, N Friedman
    posted to data expression gene module networks by wnpx on 2006-04-18 14:38:44 as ** along with 16 people ealloza orzenil tuck bayesian tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
    posted to gene module network by wnpx on 2006-07-30 16:45:34 as ** along with 18 people and 7 groups pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
  • A Novel Computational Approach for the Prediction of Networked Transcription Factors of Aryl Hydrocarbon-Receptor-Regulated Genes
    Mol Pharmacol, Vol. 66, No. 6. (1 December 2004), pp. 1557-1572.
    by Alexander Kel, Susanne Reymann, Volker Matys, Paul Nettesheim, Edgar Wingender, Jurgen Borlak
    posted to genetic_algorithm module transcription by tuck on 2005-12-30 01:18:30 as **
  • Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors,
    Journal of Molecular Biology, Vol. 309, No. 1. (25 May 2001), pp. 99-120.
    by Alexander E Kel, Olga V Kel-Margoulis, Peggy J Farnham, Stephanie M Bartley, Edgar Wingender, Michael Q Zhang
    posted to module regulation transcription transcription_factor by tuck on 2006-03-06 02:13:51 as ** along with 1 person nklee
  • An introduction to plant demography with special reference to New Zealand trees.
    New Zealand Journal of Botany, Vol. 23, No. 4. (1985), pp. 751-772.
    by J Ogden
    posted to demography module by Stockman on 2008-04-22 06:09:19 as **
  • Searching for statistically significant regulatory modules.
    Bioinformatics, Vol. 19 Suppl 2 (October 2003)
    by TL Bailey, WS Noble
    posted to cis-regulatory methods module motif by stajich on 2007-12-05 18:30:08 as ** along with 2 people and 2 groups indigoviolet xili03 EisenLab Berkeley Mycology
  • Validating module network learning algorithms using simulated data
    BMC Bioinformatics, Vol. 8, No. Suppl 2. (2007)
    by Tom Michoel, Steven Maere, Eric Bonnet, Anagha Joshi, Yvan Saeys, Tim Van den Bulcke, Koenraad Van Leemput, Piet van Remortel, Martin Kuiper, Kathleen Marchal, Yves Van de Peer
    posted to module networkestimation by shigepong on 2007-05-13 07:31:49 as ***** along with 7 people and 2 groups irinamohorianu ptrobajo ajgentles erbon vietanh0 mattjb srp33 ComplexAdaptiveSystems DSTO-CAS
  • Learning probabilistic models of cis-regulatory modules that represent logical and spatial aspects.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by K Noto, M Craven
    posted to module by shigepong on 2007-01-26 10:23:09 as **
  • Tissue-driven hypothesis of genomic evolution and sequence-expression correlations.
    Proc Natl Acad Sci U S A (14 February 2007)
    by Xun Gu, Zhixi Su
    posted to module system by shigepong on 2007-02-23 21:56:00 as **** along with 6 people jeremymiller xwbcn gpalidwor cjeans ghattem balicea
  • Human-Specific Gain of Function in a Developmental Enhancer
    Science, Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350.
    by Shyam Prabhakar, Axel Visel, Jennifer A Akiyama, Malak Shoukry, Keith D Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R Fitzpatrick, Veena Afzal, Len A Pennacchio, Edward M Rubin, James P Noonan
    posted to substitution module limb human hacns1 gain-of-function evolution enhancer conserved-non-coding-sequence chimpanzee by sebastien_vigneau on 2008-09-07 21:20:07 as ** along with 11 people and 1 group Stew shoshin bpcusack emptyhb Zephyrus djkt natstreet isimpson maximilianh caseybrown eskay Roswell Cancer Crosstalk
  • Detecting Program Modules with Low Testability
    pp. 242-250.
    by TM Khoshgoftaar, RM Szabo, JM Voas
    posted to epistemology measure measurement module survivability test testability by scis0000001 on 2006-10-07 15:23:20 as **
  • Biomolecular network motif counting and discovery by color coding
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i241-249.
    by Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Cenk S Sahinalp
    posted to bioinformatics module network by renatomilani on 2008-06-27 16:16:16 as ** along with 1 person kalvala
  • Identifying functional modules in protein-protein interaction networks: an integrated exact approach
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i223-231.
    by Marcus T Dittrich, Gunnar W Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Muller
    posted to bioinformatics interaction module network protein by renatomilani on 2008-06-27 16:14:43 as ** along with 6 people jfr jyuh chad_davis marck tmmurali dragonrez
  • Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ling Yang, Thomas Vondriska, Zhangang Han, Robb Maclellan, James Weiss, Zhilin Qu
    posted to network protein interaction module by renatomilani on 2008-07-04 18:49:31 as ** along with 3 people dolchan brianb neils
  • Function prediction and protein networks
    Current Opinion in Cell Biology, Vol. 15, No. 2. (April 2003), pp. 191-198.
    by Martijn A Huynen, Berend Snel, Christian Mering, Peer Bork
    posted to function module network protein by renatomilani on 2008-06-20 19:27:50 as **
  • The identification of functional modules from the genomic association of genes.
    Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 5890-5895.
    by B Snel, P Bork, MA Huynen
    posted to function module network protein by renatomilani on 2008-06-20 19:31:56 as ** along with 3 people ujh ichbins81 karfunkel
  • Network motifs: simple building blocks of complex networks.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827.
    by R Milo, S Shen-Orr, S Itzkovitz, N Kashtan, D Chklovskii, U Alon
    posted to module network by renatomilani on 2008-06-20 19:39:16 as ** along with 42 people and 8 groups galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor shikin carlk applesnow subhacom i-stevenson ethkim Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes GeneGo
  • Performance measurements of a depth-encoding PET detector module based on position-sensitive avalanche photodiode read-out
    Physics in Medicine and Biology, Vol. 49, No. 18. (2004), pp. 4293-4304.
    by PA Dokhale, RW Silverman, KS Shah, R Grazioso, R Farrell, J Glodo, MA Mcclish, G Entine, VH Tran, SR Cherry
    posted to psapd pet performance module doi detector by rbmoura on 2008-09-17 01:20:32 as **
  • A 4×8 APD array, consisting of two monolithic silicon wafers, coupled to a 32-channel LSO matrix for high-resolution PET
    Nuclear Science, IEEE Transactions on, Vol. 48, No. 4. (2001), pp. 1391-1396.
    by BJ Pichler, F Bernecker, G Boning, M Rafecas, W Pimpl, M Schwaiger, E Lorenz, SI Ziegler
    posted to apd characterization crosstalk detector energy high lso module resolution scintillator by rbmoura on 2008-03-31 12:25:55 as **
  • A four-Layer depth of interaction detector block for small animal PET
    Nuclear Science, IEEE Transactions on, Vol. 51, No. 5. (2004), pp. 2537-2542.
    by T Tsuda, H Murayama, K Kitamura, T Yamaya, E Yoshida, T Omura, H Kawai, N Inadama, N Orita
    posted to small pet module doi detector anipet animal by rbmoura on 2008-09-17 00:36:58 as **
  • An LSO scintillator array for a PET detector module with depth of interaction measurement
    Nuclear Science, IEEE Transactions on, Vol. 48, No. 3. (2001), pp. 684-688.
    by JS Huber, WW Moses, MS Andreaco, O Petterson
    posted to array detector doi lso measurement module pet scintillator by rbmoura on 2008-04-07 12:14:59 as **
  • Design of a depth of interaction (DOI) PET detector module
    Nuclear Science, IEEE Transactions on, Vol. 45, No. 3. (1998), pp. 1069-1073.
    by RS Miyaoka, TK Lewellen, H Yu, DL Mcdaniel
    posted to pet module doi detector by rbmoura on 2008-09-17 00:25:23 as **
  • Study of spatial resolution and depth of interaction of APD-based PET detector modules using light sharing schemes
    Nuclear Science, IEEE Transactions on, Vol. 50, No. 5. (2003), pp. 1415-1419.
    by P Bruyndonckx, S Leonard, Jiangui Liu, S Tavernier, P Szupryczynski, A Fedorov
    posted to apd detector doi light module pet resolution spatial by rbmoura on 2008-04-07 15:37:44 as **
  • Design studies for a PET detector module using a PIN photodiode to measure depth of interaction
    Nuclear Science, IEEE Transactions on, Vol. 41, No. 4. (1994), pp. 1441-1445.
    by WW Moses, SE Derenzo
    posted to pin photo pet module doi diode detector by rbmoura on 2008-09-17 00:27:35 as **
  • Design of a depth of interaction detector with a PS-PMT for PET
    Nuclear Science, IEEE Transactions on, Vol. 47, No. 3. (2000), pp. 1045-1050.
    by H Murayama, H Ishibashi, H Uchida, T Omura, T Yamashita
    posted to pspmt pet module doi detector by rbmoura on 2008-09-17 00:26:01 as **
  • Calibration of a PEM detector with depth of interaction measurement
    Nuclear Science, IEEE Transactions on, Vol. 51, No. 3. (2004), pp. 775-781.
    by GC Wang, JS Huber, WW Moses, WS Choong, JS Maltz
    posted to calibration crystal detector doi energy module pem pixel by rbmoura on 2008-04-04 17:35:19 as **
  • Performance and quality control of Clear-PEM detector modules
    Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 580, No. 2. (1 October 2007), pp. 1123-1126.
    by Pedro Amaral, Bruno Carriço, Miguel Ferreira, Rui Moura, Catarina Ortigão, Pedro Rodrigues, José C Da Silva, Andreia Trindade, João Varela
    posted to characterization clearpem control detector measurement module modules performance quality by rbmoura on 2008-06-12 18:41:54 as **
  • Clear-PEM: A PET imaging system dedicated to breast cancer diagnostics
    Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 571, No. 1-2. (1 February 2007), pp. 81-84.
    by MC Abreu, D Aguiar, E Albuquerque, FG Almeida, P Almeida, P Amaral, E Auffray, P Bento, P Bruyndonckx, R Bugalho, B Carrico, H Cordeiro, M Ferreira, NC Ferreira, F Goncalves, P Lecoq, C Leong, F Lopes, P Lousa, J Luyten, MV Martins, N Matela, PR Mendes, R Moura, J Nobre, N Oliveira, C Ortigao, L Peralta, J Rego, R Ribeiro, P Rodrigues, AI Santos, JC Silva, MM Silva, S Tavernier, IC Teixeira, JP Teixeira, A Trindade, J Trummer, J Varela
    posted to apd breast cancer clearpem dae daq design lyso matrix module pem system by rbmoura on 2008-04-04 12:44:11 as ** along with 1 person danabl
  • Module-based outcome prediction using breast cancer compendia.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by MH van Vliet, CN Klijn, LF Wessels, MJ Reinders
    posted to cancer classification geneset module by ptrobajo on 2008-03-30 23:25:03 as *** along with 3 people gowtham jfr macavity1g
  • Module map of stem cell genes guides creation of epithelial cancer stem cells.
    Cell stem cell, Vol. 2, No. 4. (10 April 2008), pp. 333-344.
    by DJ Wong, H Liu, TW Ridky, D Cassarino, E Segal, HY Chang
    posted to cancer cell map module stem by ptrobajo on 2008-06-18 10:18:41 as **
  • Revealing targeted therapy for human cancer by gene module maps.
    Cancer research, Vol. 68, No. 2. (15 January 2008), pp. 369-378.
    by DJ Wong, DS Nuyten, A Regev, M Lin, AS Adler, E Segal, MJ van de Vijver, HY Chang
    posted to cancer map module by ptrobajo on 2008-06-18 10:24:24 as ** along with 1 person chrisamiller
  • A functional and regulatory map of asthma.
    American journal of respiratory cell and molecular biology, Vol. 38, No. 3. (March 2008), pp. 324-336.
    by N Novershtern, Z Itzhaki, O Manor, N Friedman, N Kaminski
    posted to asthma module mouse pathways regulatory by ptrobajo on 2008-06-18 08:31:28 as **
  • A modular approach for integrative analysis of large-scale gene-expression and drug-response data
    Nature Biotechnology, Vol. 26, No. 5. (08 May 2008), pp. 531-539.
    by Zoltán Kutalik, Jacques S Beckmann, Sven Bergmann
    posted to drug expression gene interaction module by ptrobajo on 2008-06-18 12:53:05 as ** along with 4 people jfr stringertheory tmmurali oelemento
  • Probabilistic discovery of overlapping cellular processes and their regulation.
    J Comput Biol, Vol. 12, No. 7. (September 2005), pp. 909-927.
    by A Battle, E Segal, D Koller
    posted to overlap network module cls-anton by ptrobajo on 2008-09-29 15:45:07 as ** along with 3 people nirfriedman roys srp33
  • Extracting expression modules from perturbational gene expression compendia
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Steven Maere, Patrick Van Dijck, Martin Kuiper
    posted to compendium emiel knockout module perturbation by ptrobajo on 2008-06-05 13:49:21 as ** along with 3 people jfr lp2 barriot
  • Gene module level analysis: identification to networks and dynamics
    Current Opinion in Biotechnology, Vol. 19, No. 5. (October 2008), pp. 482-491.
    by X Wang, E Dalkic, M Wu, C Chan
    posted to review network module by pengchy on 2008-10-06 02:15:30 as **
  • Understanding Network Concepts in Modules
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Jun Dong, Steve Horvath
    posted to network module by pengchy on 2008-10-09 09:34:16 as ** along with 5 people and 1 group jfr kengg grahamc natstreet kaihsyn Bioinformatics
  • Beyond Modularity: A Developmental Perspective on Cognitive Science
    (25 September 1995)
    by Annette Karmiloff-Smith
    posted to book development module pagetian representational-redescription schema by paulclinger on 2007-03-18 03:53:01 as read along with 3 people and 1 group dina crispinb heintz folk_epistemology
  • Identifying gene regulatory modules of heat shock response in yeast
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Wei S Wu, Wen H Li
    posted to yeast regulation module heat-shock grm genetics bioinformatics by neils on 2008-09-24 00:25:46 as ** along with 1 person imina
  • DAVID Gene Functional Classification Tool: A novel biological module-centric algorithm to functionally analyze large gene list
    Genome Biology, Vol. 8 (04 September 2007), R183.
    by Da W Huang, Brad T Sherman, Qina Tan, Jack R Collins, Gregory W Alvord, Jean Roayaei, Robert Stephens, Michael W Baseler, Clifford H Lane, Richard A Lempicki
    posted to bioinformatics module tool by mellabee on 2007-10-05 11:18:53 as *** along with 7 people ndiaz jyuh aalibes dragonrez jfr rdiaz heliopais
  • Subpixel motion computing architecture
    IEE Proceedings Vision, Image and Signal Processing, Vol. 153, No. 6. (December 2006), pp. 869-880.
    by J Diaz, E Ros, S Mota, F Pelayo, EM Ortigosa
    posted to analysis architecture arrays board circuitry computing co-processing device field fpga frame fully gate grabber image module motion optical-flow output pci pipelined processing programmable sensor sensors sequences stand-alone storage subpixel system virtual working by masaakif on 2008-02-20 06:59:50 as **
  • CFinder: Locating cliques and overlapping modules in biological networks
    eprint arXiv:q-bio/0602004 (February 2006)
    by B Adamcsek, G Palla, IJ Farkas, I Derenyi, T Vicsek
    posted to clique module network by maralena on 2008-02-10 12:00:26 as ** along with 1 person Scis0000002
  • Prediction of regulatory modules comprising microRNAs and target genes.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by S Yoon, G De Micheli
    posted to microrna module regulation target by maralena on 2008-03-06 08:50:23 as ** along with 3 people and 1 group eckart_bindewald mortenlindow noano microRNA
  • GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.
    Nucleic acids research (6 May 2008)
    by Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo
    posted to functional module network by maralena on 2008-05-09 07:52:09 as ** along with 4 people jyuh pinney shigepong ptrobajo
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