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Ключевое слово molevoltestis [48 articles]

Recent papers classified by the tag molevoltestis.
  • Cross-Species Comparison of Drosophila Male Accessory Gland Protein Genes
    Genetics, Vol. 171, No. 1. (1 September 2005), pp. 131-143.
    by JL Mueller, Ravi K Ram, LA Mcgraw, Bloch, ED Siggia, AG Clark, CF Aquadro, MF Wolfner
    posted to protein molevoltestis gland gene drosophila comparative acp accessory by skumagai on 2008-06-06 14:32:15 as read along with 1 person and 1 group penka Nie
  • PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by H Mi, N Guo, A Kejariwal, PD Thomas
    posted to protein pathway panther molevoltestis genome database biological by skumagai on 2008-06-06 14:30:39 as read along with 4 people jyuh thomaskelder siebertm bootsy
  • Evolution of codon usage bias in Drosophila
    PNAS, Vol. 94, No. 15. (22 July 1997), pp. 7784-7790.
    by Jeffrey R Powell, Etsuko N Moriyama
    posted to usage molevoltestis drosophila codon by skumagai on 2008-06-06 15:56:00 as read along with 1 person gpalidwor
  • The Rate of Adaptive Evolution in Enteric Bacteria
    Molecular Biology and Evolution, Vol. 23, No. 7. (July 2006), pp. 1348-1356.
    by Charlesworth, Jane, Eyre-Walker, Adam
    posted to substitution selection salmonella rate positive molevoltestis evolution escherichia enterica coli adaptive by skumagai on 2008-06-06 01:47:48 as read along with 1 person operon
  • Maximum-Likelihood Analysis of Molecular Adaptation in Abalone Sperm Lysin Reveals Variable Selective Pressures Among Lineages and Sites
    Mol Biol Evol, Vol. 17, No. 10. (1 October 2000), pp. 1446-1455.
    by Ziheng Yang, Willie J Swanson, Victor D Vacquier
    posted to substitution sperm selection positive paml molevoltestis maximum likelihood codon abalone by skumagai on 2008-06-06 16:21:33 as read along with 1 person and 1 group stevanspringer FAB-lab
  • Adaptive evolution in humans revealed by the negative correlation between the polymorphism and fixation phases of evolution.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 10. (6 March 2007), pp. 3907-3912.
    by J Gojobori, H Tang, JM Akey, CI Wu
    posted to synonymous polymorphism nonsynonymous mutation molevoltestis human fixation evolution adaptive by skumagai on 2008-06-06 13:52:34 as read along with 1 person bpcusack
  • Rapidly Evolving Genes of Drosophila: Differing Levels of Selective Pressure in Testis, Ovary, and Head Tissues Between Sibling Species
    Molecular Biology and Evolution, Vol. 22, No. 9. (September 2005), pp. 1793-1801.
    by Santosh Jagadeeshan, Rama S Singh
    posted to testis sex sepecific rapid ovary molevoltestis head evolution drosophila by skumagai on 2008-06-06 14:06:06 as read along with 2 people and 1 group RMGraze penka Nie
  • Progress and Prospects in Evolutionary Biology : The Drosophila Model (Oxford Series in Ecology & Evolution)
    (04 September 1997)
    by Jeffrey R Powell
    posted to molevoltestis genetics evolution drosophila by skumagai on 2008-06-06 15:54:49 as read along with 2 people and 1 group indigoviolet larios EisenLab
  • High intrinsic rate of DNA loss in Drosophila.
    Nature, Vol. 384, No. 6607. (28 November 1996), pp. 346-349.
    by DA Petrov, ER Lozovskaya, DL Hartl
    posted to molevoltestis loss genome drosophila dna deletion by skumagai on 2008-06-06 15:52:27 as read along with 3 people and 1 group dpollard timflutre urgi EisenLab
  • The genomic rate of adaptive amino acid substitution in Drosophila.
    Molecular biology and evolution, Vol. 21, No. 7. (July 2004), pp. 1350-1360.
    by N Bierne, A Eyre-Walker
    posted to substitution selection positive molevoltestis drosophila amino adaptive acid by skumagai on 2008-06-06 01:44:36 as read
  • A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution.
    J Mol Evol, Vol. 59, No. 1. (July 2004), pp. 121-132.
    by JP Bielawski, Z Yang
    posted to selection positive paml molevoltestis maximum likelihood gene family codon by skumagai on 2008-06-06 01:42:34 as read along with 1 person and 1 group stevanspringer FAB-lab
  • Evolution of Proteins and Gene Expression Levels are Coupled in Drosophila and are Independently Associated with mRNA Abundance, Protein Length, and Number of Protein-Protein Interactions
    Molecular Biology and Evolution, Vol. 22, No. 5. (15 May 2005), pp. 1345-1354.
    by Bernardo Lemos, Brian R Bettencourt, Colin D Meiklejohn, Daniel L Hartl
    posted to protein-protein protein mrna molevoltestis length interaction gene expression evolution drosophila abundance by skumagai on 2008-06-06 14:28:12 as read along with 2 people and 1 group penka Garamonfok Nie
  • PAML: a program package for phylogenetic analysis by maximum likelihood.
    Comput Appl Biosci, Vol. 13, No. 5. (October 1997), pp. 555-556.
    by Z Yang
    posted to software selection positive phylogeny paml molevoltestis maximum likelihood evolution bayesian analysis by skumagai on 2008-06-06 16:20:25 as read along with 11 people and 3 groups tharris bjorns chrn chad_davis indigoviolet penka BioNica stajich pv usagi-kirin jmjimenez EisenLab Nie Berkeley Mycology
  • Preservation of Duplicate Genes by Complementary, Degenerative Mutations
    Genetics, Vol. 151, No. 4. (1 April 1999), pp. 1531-1545.
    by Allan Force, Michael Lynch, Bryan F Pickett, Angel Amores, Yi-Lin Yan, John Postlethwait
    posted to subfunctionalization neofunctionalization mutation molevoltestis gene duplication-degeneration-complementation duplicate ddc by skumagai on 2008-06-06 13:49:14 as read along with 3 people BioNica gurkanbebek RamuAnandakrishnan
  • Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila.
    Genetics, Vol. 177, No. 3. (November 2007), pp. 1321-1335.
    by W Haerty, S Jagadeeshan, RJ Kulathinal, A Wong, K Ravi Ram, LK Sirot, L Levesque, CG Artieri, MF Wolfner, A Civetta, RS Singh
    posted to srr sfp sex positive molevoltestis gene expression drosophila divergence biased by skumagai on 2008-06-06 14:03:25 as **
  • Molecular Population Genetics of Male Accessory Gland Proteins in Drosophila
    Genetics, Vol. 156, No. 4. (1 December 2000), pp. 1879-1888.
    by David J Begun, Penn Whitley, Bridget L Todd, Heidi M Waldrip-Dail, Andrew G Clark
    posted to selection protein molevoltestis gland drosophila acp accessory by skumagai on 2008-06-06 01:38:48 as read
  • Pseudogene evolution in Drosophila suggests a high rate of DNA loss.
    Mol Biol Evol, Vol. 15, No. 11. (November 1998), pp. 1562-1567.
    by DA Petrov, YC Chao, EC Stephenson, DL Hartl
    posted to pseudogene molevoltestis loss genome drosophila dna deletion by skumagai on 2008-06-06 14:39:07 as read along with 1 person and 1 group dpollard EisenLab
  • The 'effective number of codons' used in a gene.
    Gene, Vol. 87, No. 1. (1 March 1990), pp. 23-29.
    by F Wright
    posted to number molevoltestis metric index effective codon by skumagai on 2008-06-06 16:18:58 as read
  • Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination.
    Genetics, Vol. 151, No. 1. (January 1999), pp. 221-238.
    by H Akashi
    posted to simulated polymorphism molevoltestis fitness divergence data by skumagai on 2008-06-06 01:37:15 as read along with 2 people CharlesM bpb
  • An analysis of determinants of amino acids substitution rates in bacterial proteins.
    Mol Biol Evol, Vol. 21, No. 1. (January 2004), pp. 108-116.
    by EP Rocha, A Danchin
    posted to subtilis substitution molevoltestis expression escherichia coli bacillus amino acid by skumagai on 2008-06-06 16:02:41 as read along with 4 people and 1 group bjorns tny penka jpoyatos Nie
  • The rapid generation of mutation data matrices from protein sequences.
    Comput Appl Biosci, Vol. 8, No. 3. (June 1992), pp. 275-282.
    by DT Jones, WR Taylor, JM Thornton
    posted to substitution molevoltestis matrix jtt amino acid by skumagai on 2008-06-06 14:09:12 as read along with 1 person ssgong
  • Highly expressed genes in yeast evolve slowly.
    Genetics, Vol. 158, No. 2. (June 2001), pp. 927-931.
    by C Pál, B Papp, LD Hurst
    posted to molevoltestis gene expression evolution by skumagai on 2008-06-06 14:36:57 as read along with 4 people and 1 group balicea bjorns penka lewbin Nie
  • Mammalian Sperm Proteins Are Rapidly Evolving: Evidence of Positive Selection in Functionally Diverse Genes
    Mol Biol Evol, Vol. 19, No. 11. (1 November 2002), pp. 1973-1980.
    by Dara G Torgerson, Rob J Kulathinal, Rama S Singh
    posted to sperm rapid protein positive mouse molevoltestis mammal human evolution by skumagai on 2008-06-06 16:17:47 as read along with 2 people and 2 groups balicea dchughes G4ID Genetics-of-Gambling
  • Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
    Genome Res, Vol. 15, No. 1. (January 2005), pp. 1-18.
    by S Richards, Y Liu, BR Bettencourt, P Hradecky, S Letovsky, R Nielsen, K Thornton, MJ Hubisz, R Chen, RP Meisel, O Couronne, S Hua, MA Smith, P Zhang, J Liu, HJ Bussemaker, MF van Batenburg, SL Howells, SE Scherer, E Sodergren, BB Matthews, MA Crosby, AJ Schroeder, D Ortiz-Barrientos, CM Rives, ML Metzker, DM Muzny, G Scott, D Steffen, DA Wheeler, KC Worley, P Havlak, KJ Durbin, A Egan, R Gill, J Hume, MB Morgan, G Miner, C Hamilton, Y Huang, L Waldron, D Verduzco, KP Clerc-Blankenburg, I Dubchak, MA Noor, W Anderson, KP White, AG Clark, SW Schaeffer, W Gelbart, GM Weinstock, RA Gibbs
    posted to sequence molevoltestis genome drosophila by skumagai on 2008-06-06 15:59:15 as read along with 9 people and 3 groups emptyhb briann tsackton jshapiro operon indigoviolet penka adepace cisevol EisenLab Nie cis-regulatory-evolution
  • Positive selection in the egg receptor for abalone sperm lysin.
    Proc Natl Acad Sci U S A, Vol. 100, No. 8. (15 April 2003), pp. 4639-4643.
    by BE Galindo, VD Vacquier, WJ Swanson
    posted to sperm selection positive molevoltestis lysin abalone by skumagai on 2008-06-06 14:23:31 as read along with 1 person and 1 group stevanspringer FAB-lab
  • Mammalian housekeeping genes evolve more slowly than tissue-specific genes.
    Mol Biol Evol, Vol. 21, No. 2. (February 2004), pp. 236-239.
    by L Zhang, WH Li
    posted to tissue specific molevoltestis housekeeping gene evolution by skumagai on 2008-06-06 16:25:43 as read along with 3 people dragonrez bjorns gpalidwor
  • PANTHER: a library of protein families and subfamilies indexed by function.
    Genome Res, Vol. 13, No. 9. (September 2003), pp. 2129-2141.
    by PD Thomas, MJ Campbell, A Kejariwal, H Mi, B Karlak, R Daverman, K Diemer, A Muruganujan, A Narechania
    posted to protein molevoltestis family database by skumagai on 2008-06-06 16:16:17 as read
  • Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.
    Genetics, Vol. 136, No. 3. (March 1994), pp. 927-935.
    by H Akashi
    posted to usage molevoltestis drosophila codon by skumagai on 2008-06-06 01:32:14 as read along with 1 person bjorns
  • Selective sweep of a newly evolved sperm-specific gene in Drosophila.
    Nature, Vol. 396, No. 6711. (10 December 1998), pp. 572-575.
    by DI Nurminsky, MV Nurminskaya, D De Aguiar, DL Hartl
    posted to sweep sperm selective sdic reproductive molevoltestis male function drosophila by skumagai on 2008-06-06 14:34:41 as read
  • Extraordinary divergence and positive Darwinian selection in a fusagenic protein coating the acrosomal process of abalone spermatozoa.
    Proc Natl Acad Sci U S A, Vol. 92, No. 11. (23 May 1995), pp. 4957-4961.
    by WJ Swanson, VD Vacquier
    posted to sperm selection positive molevoltestis evolution divergence darwinian abalone by skumagai on 2008-06-06 16:14:59 as read along with 1 person and 1 group stevanspringer FAB-lab
  • Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
    Molecular Biology and Evolution, Vol. 22, No. 4. (April 2005), pp. 1107-1118.
    by Ziheng Yang, Wendy S Wong, Rasmus Nielsen
    posted to selection positive molevoltestis empirical bayes amino acid by skumagai on 2008-06-06 16:23:44 as read along with 6 people and 1 group CharlesM rabu BioNica Natasha stajich Garamonfok Berkeley Mycology
  • Ensembl 2008.
    Nucleic Acids Res (13 November 2007)
    by P Flicek, B L L Aken, K Beal, B Ballester, M Caccamo, Y Chen, L Clarke, G Coates, F Cunningham, T Cutts, T Down, S C C Dyer, T Eyre, S Fitzgerald, J Fernandez-Banet, S Gräf, S Haider, M Hammond, R Holland, K L L Howe, K Howe, N Johnson, A Jenkinson, A Kähäri, D Keefe, F Kokocinski, E Kulesha, D Lawson, I Longden, K Megy, P Meidl, B Overduin, A Parker, B Pritchard, A Prlic, S Rice, D Rios, M Schuster, I Sealy, G Slater, D Smedley, G Spudich, S Trevanion, A J J Vilella, J Vogel, S White, M Wood, E Birney, T Cox, V Curwen, R Durbin, X M M Fernandez-Suarez, J Herrero, T J P J Hubbard, A Kasprzyk, G Proctor, J Smith, A Ureta-Vidal, S Searle
    posted to molevoltestis ensembl 2008 by skumagai on 2008-06-06 13:59:58 as read along with 8 people jandot janasont tharris dullhunk jyuh hpiwowar flexer daed
  • Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome.
    Genetics, Vol. 168, No. 1. (September 2004), pp. 373-381.
    by S Subramanian, S Kumar
    posted to vertebrate rate molevoltestis genome gene expression evolution by skumagai on 2008-06-06 16:13:48 as read along with 1 person and 1 group penka Nie
  • Ensembl 2007.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by TJ Hubbard, BL Aken, K Beal, B Ballester, M Caccamo, Y Chen, L Clarke, G Coates, F Cunningham, T Cutts, T Down, SC Dyer, S Fitzgerald, J Fernandez-Banet, S Graf, S Haider, M Hammond, J Herrero, R Holland, K Howe, K Howe, N Johnson, A Kahari, D Keefe, F Kokocinski, E Kulesha, D Lawson, I Longden, C Melsopp, K Megy, P Meidl, B Ouverdin, A Parker, A Prlic, S Rice, D Rios, M Schuster, I Sealy, J Severin, G Slater, D Smedley, G Spudich, S Trevanion, A Vilella, J Vogel, S White, M Wood, T Cox, V Curwen, R Durbin, XM Fernandez-Suarez, P Flicek, A Kasprzyk, G Proctor, S Searle, J Smith, A Ureta-Vidal, E Birney
    posted to molevoltestis genome ensembl database 2007 by skumagai on 2008-06-06 13:59:19 as read along with 9 people and 1 group kcrawlik kuhn dullhunk massivemayhem incovoma Garamonfok asddd loopback007 flexer Cancer_Stem_Cells
  • Adaptive protein evolution in Drosophila.
    Nature, Vol. 415, No. 6875. (28 February 2002), pp. 1022-1024.
    by NG Smith, A Eyre-Walker
    posted to selection natural molevoltestis evolution drosophila adaptive by skumagai on 2008-06-06 16:11:24 as read
  • Adaptive genic evolution in the Drosophila genomes.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 7. (13 February 2007), pp. 2271-2276.
    by JA Shapiro, W Huang, C Zhang, MJ Hubisz, J Lu, DA Turissini, S Fang, HY Wang, RR Hudson, R Nielsen, Z Chen, CI Wu
    posted to recombination rate molevoltestis genome evolution drosophila adaptive by skumagai on 2008-06-06 16:10:10 as read along with 1 person operon
  • Testing the neutral theory of molecular evolution with genomic data from Drosophila
    Nature, Vol. 415, No. 6875. (28 February 2002), pp. 1024-1026.
    by Justin C Fay, Gerald J Wyckoff, Chung-I Wu
    posted to theory neutral molevoltestis molecular genome evolution drosophila data by skumagai on 2008-06-06 02:05:52 as read along with 2 people pradiptaray yife
  • Dntf-2r, a Young Drosophila Retroposed Gene With Specific Male Expression Under Positive Darwinian Selection
    Genetics, Vol. 164, No. 3. (1 July 2003), pp. 977-988.
    by Esther Betrán, Manyuan Long
    posted to selection reproductive protein positive molevoltestis male drosophila darwinian by skumagai on 2008-06-06 00:41:18 as read
  • Positive and negative selection on the human genome.
    Genetics, Vol. 158, No. 3. (July 2001), pp. 1227-1234.
    by JC Fay, GJ Wyckoff, CI Wu
    posted to selection positive negative molevoltestis human genome evolution darwinian by skumagai on 2008-06-06 02:04:26 as read along with 5 people and 1 group shoshin stevanspringer ramensky ankur_iitg friendpine FAB-lab
  • MUSCLE: multiple sequence alignment with high accuracy and high throughput.
    Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1792-1797.
    by RC Edgar
    posted to software muscle molevoltestis alignment by skumagai on 2008-06-06 02:02:14 as read along with 15 people and 2 groups dmp kcrawlik sconlan newton1234 edvin sanchezbuelna bmaust nachtalp bpb chrn jwm Haggan timflutre olympos martainn Radiation_Damage Stressosome
  • Cost of mating in Drosophila melanogaster females is mediated by male accessory gland products.
    Nature, Vol. 373, No. 6511. (19 January 1995), pp. 241-244.
    by T Chapman, LF Liddle, JM Kalb, MF Wolfner, L Partridge
    posted to molevoltestis evolutionary drosophila conflict by skumagai on 2008-06-09 20:19:39 as *****
  • Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection.
    Journal of molecular evolution, Vol. 57 Suppl 1 (2003)
    by SA Sawyer, RJ Kulathinal, CD Bustamante, DL Hartl
    posted to selection positive molevoltestis drosophila bayesian analysis by skumagai on 2008-06-06 16:07:28 as read
  • Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate.
    Mol Biol Evol, Vol. 17, No. 1. (January 2000), pp. 68-74.
    by L Duret, D Mouchiroud
    posted to substitution selection rate pattern mtation molevoltestis mammal intensity expression by skumagai on 2008-06-06 01:59:46 as read along with 1 person bjorns
  • Concerted evolution in an egg receptor for a rapidly evolving abalone sperm protein.
    Science, Vol. 281, No. 5377. (31 July 1998), pp. 710-712.
    by WJ Swanson, VD Vacquier
    posted to reproductive molevoltestis gene evolution abalone by skumagai on 2008-06-06 16:06:11 as read along with 1 person and 1 group stevanspringer FAB-lab
  • Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia.
    Microbiology, Vol. 149, No. Pt 9. (September 2003), pp. 2585-2596.
    by JT Herbeck, DP Wall, JJ Wernegreen
    posted to wigglesworthia usage tsetse population mutational molevoltestis genetic gene fly expression endosymbiont drift codon bottleneck bias amino acid by skumagai on 2008-06-06 13:56:42 as read along with 2 people operon bjorns
  • High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups.
    Mol Biol Evol, Vol. 15, No. 3. (March 1998), pp. 293-302.
    by DA Petrov, DL Hartl
    posted to molevoltestis loss genome drosophila dna deletion by skumagai on 2008-06-06 14:41:19 as read along with 1 person and 1 group dpollard EisenLab
  • Rapid evolution of a primate sperm protein: relaxation of functional constraint or positive Darwinian selection?
    Molecular biology and evolution, Vol. 16, No. 5. (May 1999), pp. 706-710.
    by AP Rooney, J Zhang
    posted to selection rapid positive molevoltestis mammal darwinian by skumagai on 2008-06-06 16:04:37 as read
  • Evolutionary history of the sex-peptide (Acp70A) gene region in Drosophila melanogaster.
    Genetics, Vol. 147, No. 1. (September 1997), pp. 189-197.
    by S Cirera, M Aguadé
    posted to selection positive molevoltestis drosophila acp by skumagai on 2008-06-06 01:56:12 as read
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