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Ключевое слово prediction [943 articles]

Recent papers classified by the tag prediction.
  • Prediction of the structure of symmetrical protein assemblies
    Proceedings of the National Academy of Sciences (31 October 2007), 0702626104.
    by Ingemar Andre, Philip Bradley, Chu Wang, David Baker
    posted to prediction protein structure by zwang on 2007-11-07 07:44:46 as * along with 4 people and 2 groups jwm jmrivort cjeans sobolevnrm Supramolecular baker-group
  • Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
    BMC Bioinformatics, Vol. 8 (19 April 2007), 130.
    by Arif O Harmanci, Gaurav Sharma, David H Mathews
    posted to prediction rna structure by zwang on 2007-05-29 12:26:56 as **
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to co-evolution domain prediction protein by zwang on 2007-11-03 03:07:56 as **** along with 1 person cjeans
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A Marti-Renom, Baldo Oliva
    posted to interaction interface motif prediction protein by zwang on 2007-10-22 05:23:09 as **** along with 2 people Ema winterschlaefer
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to interaction prediction protein sequence structure by zwang on 2007-10-22 05:11:20 as **** along with 2 people winterschlaefer cjeans
  • I-TASSER server for protein 3D structure prediction
    BMC Bioinformatics, Vol. 9 (23 January 2008), 40.
    by Yang Zhang
    posted to prediction protein structure by zwang on 2008-02-24 13:43:46 as ** along with 4 people chad_davis mkurc rabio mclarenv
  • Predicting synthetic rescues in metabolic networks
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Adilson E Motter, Natali Gulbahce, Eivind Almaas, Albert-Laszlo Barabasi
    posted to metabolism network prediction by zwang on 2008-02-17 10:43:10 as ** along with 9 people tmmurali debasis kentsis bootsy biomcgary cabbagezs westoll shikin shung
  • Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e237.
    by Juan A Ranea, Corin Yeats, Alastair Grant, Christine A Orengo
    posted to eukaryota genome hierarchical phylogeny prediction protein by zwang on 2007-12-10 04:43:48 as *** along with 4 people eckart_bindewald skhadar asddd hpaces
  • Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Lukas Burger, Erik van Nimwegen
    posted to alignment bayesian interaction prediction protein sequence by zwang on 2008-02-17 10:10:43 as **** along with 10 people pansapiens kengg grahamc laughcry biomcgary cabbagezs roys cdeane gjuggler phoenixzxl
  • Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e220.
    by Peter M Kasson, Vijay S Pande
    posted to dynamics prediction by zwang on 2007-12-10 04:34:31 as * along with 3 people and 1 group sobolevnrm paulschlesinger Ema baker-group
  • Analysis on multi-domain cooperation for predicting protein-protein interactions
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Rui S Wang, Yong Wang, Ling Y Wu, Xiang S Zhang, Luonan Chen
    posted to co-evolution domain interaction prediction protein by zwang on 2007-10-22 01:55:10 as *** along with 1 person phoenixzxl
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to co-evolution domain prediction protein by zwang on 2007-12-10 04:24:46 as ***** along with 11 people and 1 group pradiptaray balicea skhadar sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine baker-group
  • Predicting Human Interactive Learning by Regret-Driven Neural Networks
    Science, Vol. 319, No. 5866. (22 February 2008), pp. 1111-1113.
    by Davide Marchiori, Massimo Warglien
    posted to interaction network neural prediction by zwang on 2008-04-12 13:33:57 as **** along with 5 people and 1 group mdimmic brian Koh shigepong shivakmr VisionLab
  • Predicting functionally important residues from sequence conservation
    Bioinformatics (22 May 2007), btm270.
    by John A Capra, Mona Singh
    posted to prediction residue by zwang on 2007-06-10 16:23:10 as ** along with 7 people and 2 groups dgront grahamc azazello cabbagezs Jporci niallhaslam santiago ParkinsonLab_at_MaRS MBLAB
  • Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation
    Nature Methods, Vol. 4, No. 7. (24 June 2007), pp. 563-565.
    by Laurence Ettwiller, Benedict Paten, Mirana Ramialison, Ewan Birney, Joachim Wittbrodt
    posted to chromatin motif prediction regulatory by zwang on 2007-08-28 03:56:29 as * along with 3 people and 1 group brant maximilianh fpattyn EisenLab
  • Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology
    PLoS Biology, Vol. 5, No. 4. (1 April 2007), e76.
    by Lars Malmström, Michael Riffle, Charlie E Strauss, Dylan Chivian, Trisha N Davis, Richard Bonneau, David Baker
    posted to gene prediction structure yeast by zwang on 2007-04-19 15:17:08 as *
  • Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e54.
    by Axel Bernal, Koby Crammer, Artemis Hatzigeorgiou, Fernando Pereira
    posted to gene prediction by zwang on 2007-04-19 15:12:45 as * along with 4 people and 2 groups alexl dpollard wenhan acarbo Bioinformatics EisenLab
  • Predicting protein function from domain content
    Bioinformatics (30 June 2008), btn312.
    by Kristoffer Forslund, Erik L Sonnhammer
    posted to protein prediction domain by zwang on 2008-07-01 02:44:42 as *** along with 2 people reyez phoenixzxl
  • Progress and challenges in protein structure prediction
    Current Opinion in Structural Biology, Vol. 18, No. 3. (June 2008), pp. 342-348.
    by Yang Zhang
    posted to structure protein prediction by zwang on 2008-06-27 03:37:25 as ** along with 2 people marck phoenixzxl
  • How does eukaryotic gene prediction work?
    Nature Biotechnology, Vol. 25, No. 8., pp. 883-885.
    by Michael R Brent
    posted to eukaryota gene prediction by zwang on 2007-08-14 08:01:16 as **** along with 7 people and 3 groups jyuh indigoviolet dchughes wenhan cabbagezs nklee ale EisenLab G4ID Genetics-of-Gambling
  • A Bayesian Estimator of Protein-Protein Association Probabilities
    Bioinformatics (22 May 2008), btn238.
    by JM Gilmore, DL Auberry, JL Sharp, AM White, KK Anderson, DS Daly
    posted to protein prediction interaction bayesian by zwang on 2008-06-03 04:01:29 as ** along with 2 people renatomilani jyuh
  • Methods and protocols for prediction of immunogenic epitopes
    Brief Bioinform, Vol. 8, No. 2. (1 March 2007), pp. 96-108.
    by Joo C Tong, Tin W Tan, Shoba Ranganathan
    posted to epitope prediction by zwang on 2007-04-24 15:51:48 as ** along with 1 person operon
  • De Novo Computational Design of Retro-Aldol Enzymes
    Science, Vol. 319, No. 5868. (7 March 2008), pp. 1387-1391.
    by Lin Jiang, Eric A Althoff, Fernando R Clemente, Lindsey Doyle, Daniela Rothlisberger, Alexandre Zanghellini, Jasmine L Gallaher, Jamie L Betker, Fujie Tanaka, Carlos F Barbas, Donald Hilvert, Kendall N Houk, Barry L Stoddard, David Baker
    posted to design prediction protein by zwang on 2008-03-07 03:02:39 as ** along with 11 people and 3 groups joseph_x_zhou ucbcjbm barry aalibes jwm aprasad dgront sobolevnrm davidlott msuarezdiez scienbox McCammon structural_bioinformatics baker-group
  • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    Nature, Vol. 452, No. 7183., pp. 51-55.
    by Marc Parisien, François Major
    posted to prediction rna sequence structure by zwang on 2008-03-07 02:48:26 as *** along with 3 people reyez austin elfar
  • Evaluating and Learning from RNA Pseudotorsional Space: Quantitative Validation of a Reduced Representation for RNA Structure
    Journal of Molecular Biology, Vol. 372, No. 4. (28 September 2007), pp. 942-957.
    by Leven M Wadley, Kevin S Keating, Carlos M Duarte, Anna M Pyle
    posted to prediction rna structure by zwang on 2007-11-01 07:34:03 as ** along with 1 person reyez
  • Predicting protein function from sequence and structure
    Nat Rev Mol Cell Biol, Vol. 8, No. 12. (December 2007), pp. 995-1005.
    by David Lee, Oliver Redfern, Christine Orengo
    posted to function prediction protein review sequence structure by zwang on 2007-12-08 08:55:16 as *** along with 8 people kluck skhadar neils cjeans Evangelia hpaces Ema renatomilani
  • Correlated substitution analysis and the prediction of amino acid structural contacts
    Brief Bioinform (13 November 2007), bbm052.
    by David S Horner, Walter Pirovano, Graziano Pesole
    posted to co-evolution contact prediction structure substitution by zwang on 2008-03-20 13:25:08 as *** along with 2 people and 3 groups barry sobolevnrm structural_bioinformatics Bioinformatics baker-group
  • Interaction-Site Prediction for Protein Complexes: a Critical Assessment
    Bioinformatics (22 June 2007), btm323.
    by Huan-Xiang Zhou, Sanbo Qin
    posted to interaction prediction protein site by zwang on 2007-06-25 01:48:20 as **** along with 9 people higueruelo tjimenez bicko malcook cabbagezs niallhaslam carlescorbi marti phoenixzxl
  • 3D models of yeast RNase P/MRP proteins Rpp1p and Pop3p
    RNA, Vol. 11, No. 2. (1 February 2005), pp. 123-127.
    by Mensur Dlakic
    posted to prediction protein rnasep structure subunit yeast by zwang on 2007-07-26 15:46:54 as ****
  • Analysis and prediction of functionally important sites in proteins.
    Protein Sci, Vol. 16, No. 1. (January 2007), pp. 4-13.
    by S Chakrabarti, CJ Lanczycki
    posted to prediction protein site by zwang on 2007-04-16 14:09:26 as ** along with 4 people tjimenez annotator_2006 MaggieYe Jporci
  • Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences
    Nucl. Acids Res. (4 April 2008), gkn159.
    by Yanzhi Guo, Lezheng Yu, Zhining Wen, Menglong Li
    posted to svm protein prediction interaction by zwang on 2008-06-16 03:51:12 as **** along with 4 people marck phoenixzxl tmmurali jyuh
  • Probabilistic prediction and ranking of human protein-protein interactions
    BMC Bioinformatics, Vol. 8 (05 July 2007), 239.
    by Michelle S Scott, Geoffrey J Barton
    posted to interaction prediction protein by zwang on 2007-07-13 17:19:17 as **** along with 4 people and 1 group chad_davis wnpx grahamc mingzhi ParkinsonLab_at_MaRS
  • Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
    BMC Bioinformatics, Vol. 8 (09 January 2007), 6.
    by Roger A Craig, Li Liao
    posted to interaction phylogeny prediction protein by zwang on 2007-04-16 13:57:11 as *** along with 1 person iris_2001
  • Predicting novel RNA-RNA interactions.
    Current opinion in structural biology (14 May 2008)
    by Irmtraud M M Meyer
    posted to structure rna prediction interaction by zwang on 2008-06-16 03:49:12 as ***** along with 1 person marck
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to interaction prediction protein sequence structure by zwang on 2007-11-02 08:05:43 as *** along with 3 people bicko chad_davis dquest
  • Prediction of Functional Sites Based on the Fuzzy Oil Drop Model
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e94.
    by Michał Bryliński, Katarzyna Prymula, Wiktor Jurkowski, Marek Kochańczyk, Ewa Stawowczyk, Leszek Konieczny, Irena Roterman
    posted to prediction site by zwang on 2007-05-26 05:09:12 as * along with 1 person and 1 group Einat structural_bioinformatics
  • Prediction of structures of multidomain proteins from structures of the individual domains.
    Protein Sci (22 December 2006)
    by Andrew M M Wollacott, Alexandre Zanghellini, Paul Murphy, David Baker
    posted to domain prediction protein structure by zwang on 2007-04-16 13:37:00 as ** along with 4 people wouterboomsma choonpeng IrinaMoreira rph
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to clustering genome motif prediction yeast by zwang on 2007-11-01 02:15:02 as *** along with 12 people and 2 groups ana brant cwbrown aswin cjeans cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
  • Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins
    BMC Bioinformatics, Vol. 8 (05 May 2007), 147.
    by Qiwen Dong, Xiaolong Wang, Lei Lin, Yi Guan
    posted to binding interface prediction profile protein residue by zwang on 2007-05-06 09:28:10 as **** along with 2 people marti bicko
  • Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function.
    PLoS Comput Biol, Vol. 3, No. 4. (6 April 2007)
    by Yili Chen, Thomas W W Blackwell, Ji Chen, Jing Gao, Angel W W Lee, David J J States
    posted to chromatin gene genome integration prediction structure by zwang on 2007-04-28 12:36:42 as ** along with 1 person and 2 groups kengg Bioinformatics Plantandetc
  • Automated de novo prediction of native-like RNA tertiary structures
    PNAS (28 August 2007), 0703836104.
    by Rhiju Das, David Baker
    posted to prediction rna structure by zwang on 2007-08-31 16:23:25 as **** along with 6 people and 2 groups reyez jwm marcius eckart_bindewald physics Ema BioinfoCIPF SGU-CIPF
  • Genome-wide prediction of matrix attachment regions that increase gene expression in mammalian cells
    Nat Meth, Vol. 4, No. 9. (2007), pp. 747-753.
    by Pierre-Alain Girod, Duc-Quang Nguyen, David Calabrese, Stefania Puttini, Melanie Grandjean, Danielle Martinet, Alexandre Regamey, Damien Saugy, Jacques S Beckmann, Philipp Bucher, Nicolas Mermod
    posted to expression gene genome-wide mammal prediction by zwang on 2007-08-31 16:22:46 as * along with 2 people sebastien_vigneau uz_labu_laimi
  • Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e43.
    by Benjamin A Shoemaker, Anna R Panchenko
    posted to domain interaction prediction protein by zwang on 2007-04-28 12:23:05 as *** along with 13 people higueruelo carlk Yanno jyuh aalibes bicko jfr chad_davis cjeans iris_2001 lpfernandes groepl Evangelia
  • Network-based global inference of human disease genes
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Xuebing Wu, Rui Jiang, Michael Q Zhang, Shao Li
    posted to prediction network human gene by zwang on 2008-05-09 02:59:01 as **** along with 6 people Borelli ptrobajo bootsy maralena jyuh biomcgary
  • Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction
    Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 333-340.
    by SD Dunn, LM Wahl, GB Gloor
    posted to residue prediction phylogeny mi interaction contact by zwang on 2008-05-09 02:44:06 as *** along with 3 people and 1 group marck bicko sobolevnrm baker-group
  • InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes
    BMC Bioinformatics, Vol. 8 (26 October 2007), 414.
    by Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao
    posted to bacterial genome interaction prediction protein by zwang on 2007-10-29 13:11:19 as ** along with 2 people and 1 group tmmurali iris_2001 csb_journal_club_public
  • Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
    Mol Syst Biol, Vol. 3 (10 July 2007)
    by Robert Schuetz, Lars Kuepfer, Uwe Sauer
    posted to bacterial prediction systematic by zwang on 2007-07-11 19:28:02 as ** along with 4 people and 1 group michaelbarton alexg fishtank Ema Bioinformatics
  • High-resolution structure prediction and the crystallographic phase problem
    Nature (14 October 2007)
    by Bin Qian, Srivatsan Raman, Rhiju Das, Philip Bradley, Airlie J Mccoy, Randy J Read, David Baker
    posted to prediction structure by zwang on 2007-11-13 17:07:38 as *** along with 15 people and 2 groups ardalby apaydin aheilbut jwm chad_davis eckart_bindewald ffranca dgront massivemayhem cjeans cactus sobolevnrm boris_aguilar Ema chenway OPIG baker-group
  • Computational biology: Protein predictions
    Nature (14 October 2007)
    by Eleanor J Dodson
    posted to prediction protein by zwang on 2007-11-13 17:06:59 as * along with 5 people and 1 group saunders dullhunk massivemayhem cjeans mingzhi libr
  • MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing.
    Mol Cell, Vol. 27, No. 1. (6 July 2007), pp. 91-105.
    by Andrew Grimson, Kyle Kai-How K Farh, Wendy K K Johnston, Philip Garrett-Engele, Lee P P Lim, David P P Bartel
    posted to mammal microrna prediction target by zwang on 2007-08-15 04:15:51 as ** along with 5 people and 1 group andersbj bootsy heliopais fpattyn maralena microRNA
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