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Ключевое слово primer [68 articles]

Recent papers classified by the tag primer.
  • notes Where did the BLOSUM62 alignment score matrix come from?
    Nat Biotechnol, Vol. 22, No. 8. (August 2004), pp. 1035-1036.
    by SR Eddy
    posted to amino-acid primer sequence-alignment substitution-matrix by xiaobeizhao on 2006-10-08 22:31:06 as ***** along with 5 people reyez ziquje bicko gurkanbebek rabio
  • What is dynamic programming?
    Nat Biotech, Vol. 22, No. 7. (July 2004), pp. 909-910.
    by Sean R Eddy
    posted to dynamic-programming primer by xiaobeizhao on 2006-10-08 22:24:20 as read along with 1 person estrabd
  • Designing multiple degenerate primers via consecutive pairwise alignments
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Hamed S Najafabadi, Noorossadat Torabi, Mahmood Chamankhah
    posted to bioinformatics design primer by Thaverkamp on 2008-01-28 08:22:54 as *** along with 1 person and 1 group jyuh Microbial-Ecology
  • Potential for enlarging DNA memory: the validity of experimental operations of scaled-up nested primer molecular memory
    Biosystems, Vol. 80, No. 1. (April 2005), pp. 99-112.
    by Satoshi Kashiwamura, Masahito Yamamoto, Atsushi Kameda, Toshikazu Shiba, Azuma Ohuchi
    posted to dna memories nested primer by stsaft on 2008-03-27 22:04:23 as **
  • Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction
    Biotechnology and Bioengineering, Vol. 89, No. 6. (2005), pp. 670-679.
    by Youngseob Yu, Changsoo Lee, Jaai Kim, Seokhwan Hwang
    posted to group-specific pcr primer probe by skato_toyaku on 2008-03-06 10:11:53 as **
  • The PCR suite.
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 591-593.
    by MJ van Baren, P Heutink
    posted to software snp sequencing primer pcr by sebastien_vigneau on 2008-06-06 03:23:43 as read along with 1 person jyuh
  • PrimerZ: streamlined primer design for promoters, exons and human SNPs.
    Nucleic Acids Res (31 May 2007)
    by Ming-Fang F Tsai, Yi-Jung J Lin, Yu-Chang C Cheng, Kuo-Hsi H Lee, Cheng-Chih C Huang, Yuan-Tsong T Chen, Adam Yao
    posted to bioinformatics primer by sebastien_vigneau on 2007-06-02 13:12:37 as ** along with 1 person jyuh
  • Genomic imprinting.
    Curr Biol, Vol. 14, No. 16. (24 August 2004)
    by ST da Rocha, AC Ferguson-Smith
    posted to epigenetics imprinting primer review by rschulz on 2008-01-10 11:07:26 as **
  • What are artificial neural networks?
    Nature Biotechnology, Vol. 26, No. 2., pp. 195-197.
    by Anders Krogh
    posted to primer neural-networks by mjoach on 2008-07-24 16:21:38 as ** along with 10 people ale adacier jfr Yanno jyuh dullhunk zwang cabbagezs asddd sci91078
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to primer pca by mjoach on 2008-07-24 16:10:24 as ** along with 53 people and 3 groups jdiezperezj ale rrbarb HugoMarcelo tharris rsantana kengg laharrin chrissp100 xingxu dekay23 rvosa i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan sobolevnrm Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu FAB-lab Bioinformatics baker-group
  • Differences in recreationally targeted fishes between protected and fished areas of a coral reef marine park
    Journal of Experimental Marine Biology and Ecology, Vol. 294, No. 2. (14 October 2003), pp. 145-168.
    by Mark Westera, Paul Lavery, Glenn Hyndes
    posted to anosim mds methods multivariate primer simper statistics by melissa_wos on 2008-04-02 17:56:31 as **
  • The influence of data transformations on biological monitoring studies using macroinvertebrates
    Water Research, Vol. 33, No. 2. (February 1999), pp. 343-350.
    by Richard S Thorne, Peter W Williams, Yong Cao
    posted to anosim cluster methods multivariate primer simper statistics by melissa_wos on 2008-04-02 17:54:44 as **
  • Resolution of the spatial variability in sediment composition within and between water-storage reservoirs using non-parametric statistical techniques
    Water Research, Vol. 32, No. 3. (March 1998), pp. 826-830.
    by DS Baldwin, P Ford, DL Nielsen
    posted to anosim mds methods multivariate primer simper statistics by melissa_wos on 2008-04-02 17:53:39 as ***
  • Evaluation of primers and PCR conditions for the analysis of 16S rRNA genes from a natural environment.
    FEMS microbiology letters, Vol. 221, No. 2. (25 April 2003), pp. 299-304.
    by Y Hongoh, H Yuzawa, M Ohkuma, T Kudo
    posted to primer library clone 16s by mcox on 2008-05-12 18:14:43 as **
  • A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences.
    Applied and environmental microbiology, Vol. 62, No. 3. (March 1996), pp. 872-879.
    by CF Brunk, E Avaniss-Aghajani, CA Brunk
    posted to primer methods bioinformatics 16s by mcox on 2008-05-12 17:58:18 as **
  • PRIMEGENS-v2: Genome-wide primer design for analyzing DNA methylation patterns of CpG islands
    Bioinformatics (25 June 2008), btn320.
    by Gyan P Srivastava, Juyuan Guo, Huidong Shi, Dong Xu
    posted to primer methylation dna cpg by kjglennie on 2008-07-18 04:54:14 as ** along with 2 people jyuh natstreet
  • Complex spatial and temporal patterns of littoral benthic communities interacting with water level fluctuations and wind exposure in the littoral zone of a large lake
    Fundamental and Applied Limnology, Vol. 169, No. 2. (June 2007), pp. 115-129.
    by Nicole Scheifhacken, Christian Fiek, Karl-Otto Rothhaupt
    posted to fluctuation level water exposure wave eulittoral zone biology fetch limnology macroinvertebrates primer slope by kaniko on 2007-07-12 10:07:41 as read
  • MultiPLX: automatic grouping and evaluation of PCR primers.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1701-1702.
    by L Kaplinski, R Andreson, T Puurand, M Remm
    posted to primer pcr multiplex by jyuh on 2007-09-14 05:13:47 as **
  • PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs.
    Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005)
    by J Fredslund, L Schauser, LH Madsen, N Sandal, J Stougaard
    posted to primer pcr alignment by jyuh on 2008-07-17 09:09:39 as **
  • GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.
    BMC bioinformatics, Vol. 9 Suppl 4 (2008)
    by AL Lamprecht, T Margaria, B Steffen, A Sczyrba, S Hartmeier, R Giegerich
    posted to primer pcr alignment by jyuh on 2008-05-16 04:55:06 as ** along with 1 person dullhunk
  • MuPlex: multi-objective multiplex PCR assay design.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by J Rachlin, C Ding, C Cantor, S Kasif
    posted to primer pcr multiplex by jyuh on 2008-07-17 09:06:38 as ** along with 1 person caldavis
  • Amplicon: software for designing PCR primers on aligned DNA sequences.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1644-1645.
    by SN Jarman
    posted to primer pcr alignment by jyuh on 2007-09-14 05:11:18 as **
  • QPRIMER: A Quick Web-based Application for Designing Conserved PCR Primers from Multigenome Alignments.
    Bioinformatics (28 June 2007)
    by Namshin Kim, Christopher Lee
    posted to primer pcr alignment by jyuh on 2007-09-09 17:11:42 as ** along with 4 people and 1 group sebastien_vigneau grahamc ryanraaum asddd ParkinsonLab_at_MaRS
  • WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations
    BMC Genomics, Vol. 8 (14 August 2007), 275.
    by Pongsakorn Wangkumhang, Kridsadakorn Chaichoompu, Chumpol Ngamphiw, Uttapong Ruangrit, Juntima Chanprasert, Anunchai Assawamakin, Sissades Tongsima
    posted to snp primer pcr by jyuh on 2007-09-24 04:45:05 as ** along with 1 person sebastien_vigneau
  • Enhancements and modifications of primer design program Primer3.
    Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1289-1291.
    by T Koressaar, M Remm
    posted to primer pcr by jyuh on 2007-09-24 04:22:34 as **
  • Primique: automatic design of specific PCR primers for each sequence in a family
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Jakob Fredslund, Mette Lange
    posted to primer pcr by jyuh on 2008-02-01 02:17:00 as ** along with 1 person niallhaslam
  • SNPbox: a modular software package for large-scale primer design.
    Bioinformatics, Vol. 21, No. 3. (1 February 2005), pp. 385-387.
    by S Weckx, P De Rijk, C Van Broeckhoven, J Del-Favero
    posted to snp primer by jyuh on 2007-09-14 05:07:56 as ** along with 1 person sebastien_vigneau
  • MAD-DPD: designing highly degenerate primers with maximum amplification specificity.
    BioTechniques, Vol. 44, No. 4. (April 2008), pp. 519-526.
    by H Shateri Najafabadi, A Saberi, N Torabi, M Chamankhah
    posted to primer pcr alignment by jyuh on 2008-05-11 14:52:56 as **
  • Efficient non-unique probes selection algorithms for DNA microarray.
    BMC genomics, Vol. 9 Suppl 1 (2008)
    by P Deng, MT Thai, Q Ma, W Wu
    posted to primer microarray by jyuh on 2008-07-17 15:16:35 as ** along with 1 person jfr
  • methBLAST and methPrimerDB: web-tools for PCR based methylation analysis
    BMC Bioinformatics, Vol. 7 (09 November 2006), 496.
    by Filip Pattyn, Jasmien Hoebeeck, Piet Robbrecht, Evi Michels, Anne De Paepe, Guy Bottu, David Coornaert, Robert Herzog, Frank Speleman, Jo Vandesompele
    posted to primer pcr methylation by jyuh on 2007-09-14 05:07:40 as ** along with 2 people kochhan epigenetics
  • BlastDigester--a web-based program for efficient CAPS marker design.
    Trends in genetics : TIG, Vol. 20, No. 7. (July 2004), pp. 280-283.
    by K Ilic, T Berleth, NJ Provart
    posted to snp rflp primer blast by jyuh on 2008-07-18 04:20:18 as **
  • UniPrime: a workflow-based platform for improved universal primer design
    Nucl. Acids Res., Vol. 36, No. 10. (1 June 2008), e56.
    by Michael Bekaert, Emma C Teeling
    posted to workflow primer pcr by jyuh on 2008-06-11 07:43:19 as ** along with 3 people and 1 group niallhaslam tharris stajich Berkeley Mycology
  • MultiPrimer: software for multiplex primer design.
    Applied bioinformatics, Vol. 5, No. 2. (2006), pp. 99-109.
    by C Lee, JS Wu, YL Shiue, HL Liang
    posted to primer pcr multiplex by jyuh on 2008-07-17 09:15:00 as **
  • EasyExonPrimer: automated primer design for exon sequences.
    Appl Bioinformatics, Vol. 5, No. 2. (2006), pp. 119-120.
    by X Wu, DJ Munroe
    posted to primer pcr by jyuh on 2007-09-14 05:15:59 as **
  • Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments.
    Nucleic acids research, Vol. 34, No. 22. (2006), pp. 6605-6611.
    by OJ Jabado, G Palacios, V Kapoor, J Hui, N Renwick, J Zhai, T Briese, WI Lipkin
    posted to primer pcr alignment by jyuh on 2008-07-17 09:14:39 as **
  • PCR primer design using statistical modeling.
    Methods in molecular biology (Clifton, N.J.), Vol. 402 (2007), pp. 93-104.
    by A Yuryev
    posted to snp primer pcr by jyuh on 2008-07-17 09:42:27 as **
  • Design factors that influence PCR amplification success of cross-species primers among 1147 mammalian primer pairs
    BMC Genomics, Vol. 7 (09 October 2006), 253.
    by Donna JE Housley, Zachary A Zalewski, Stephanie E Beckett, Patrick J Venta
    posted to primer pcr cross-species by jyuh on 2007-10-27 07:55:30 as **
  • Predicting failure rate of PCR in large genomes
    Nucl. Acids Res. (20 May 2008), gkn290.
    by Reidar Andreson, Tonu Mols, Maido Remm
    posted to primer pcr by jyuh on 2008-07-17 09:41:18 as ** along with 3 people niallhaslam balicea wisdom_love
  • Making ends meet in genetic analysis using padlock probes.
    Human mutation, Vol. 19, No. 4. (April 2002), pp. 410-415.
    by M Nilsson, J Banér, M Mendel-Hartvig, F Dahl, DO Antson, M Gullberg, U Landegren
    posted to primer pcr padlock by jyuh on 2008-07-17 11:27:42 as **
  • AutoDimer: a screening tool for primer-dimer and hairpin structures.
    Biotechniques, Vol. 37, No. 2. (August 2004), pp. 226-231.
    by PM Vallone, JM Butler
    posted to primer pcr by jyuh on 2007-09-14 05:14:40 as **
  • Improved assay-dependent searching of nucleic acid sequence databases.
    Nucleic acids research, Vol. 36, No. 12. (July 2008)
    by JD Gans, M Wolinsky
    posted to simulation primer pcr by jyuh on 2008-07-17 11:23:05 as **
  • Fast masking of repeated primer binding sites in eukaryotic genomes.
    Methods in molecular biology (Clifton, N.J.), Vol. 402 (2007), pp. 201-218.
    by R Andreson, L Kaplinski, M Remm
    posted to snp primer pcr by jyuh on 2008-07-17 09:40:24 as **
  • MultiPriDe: automated batch development of quantitative real-time PCR primers.
    Nucleic acids research, Vol. 36, No. 9. (May 2008), pp. 3095-3100.
    by AC Ziesel, MA Chrenek, PW Wong
    posted to primer pcr by jyuh on 2008-07-17 08:29:37 as **
  • The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays.
    BMC Bioinformatics, Vol. 9 Suppl 1 (2008)
    by SH Chen, CZ Lo, MC Tsai, CA Hsiung, CY Lin
    posted to taiwan primer microarray by jyuh on 2008-03-21 03:18:01 as **
  • ProbeMaker: an extensible framework for design of sets of oligonucleotide probes
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Johan Stenberg, Mats Nilsson, Ulf Landegren
    posted to primer pcr padlock by jyuh on 2008-03-21 03:17:04 as ** along with 1 person wook
  • SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by R Andreson, T Puurand, M Remm
    posted to snp primer pcr by jyuh on 2008-03-29 01:16:05 as ** along with 1 person farhat
  • GENOMEMASKER package for designing unique genomic PCR primers.
    BMC Bioinformatics, Vol. 7 (2006)
    by R Andreson, E Reppo, L Kaplinski, M Remm
    posted to primer pcr by jyuh on 2008-07-16 17:29:30 as ** along with 2 people caldavis GenEglob
  • A novel universal real-time PCR system using the attached universal duplex probes for quantitative analysis of nucleic acids
    BMC Molecular Biology, Vol. 9 (04 June 2008), 54.
    by Litao Yang, Wanqi Liang, Lingxi Jiang, Wenquan Li, Wei Cao, Zoe A Wilson, Dabing Zhang
    posted to primer pcr cost-effective by jyuh on 2008-07-17 09:28:21 as ** along with 1 person fpattyn
  • MegaPlex PCR: a strategy for multiplex amplification
    Nature Methods, Vol. 4, No. 10. (16 September 2007), pp. 835-837.
    by Linda S Meuzelaar, Owen Lancaster, Paul J Pasche, Guido Kopal, Anthony J Brookes
    posted to wga snp primer pcr multiplex by jyuh on 2007-10-30 02:18:41 as **
  • MultiPrimer: a system for microarray PCR primer design.
    Methods in molecular biology (Clifton, N.J.), Vol. 402 (2007), pp. 305-314.
    by R Fernandes, S Skiena
    posted to primer microarray by jyuh on 2008-07-17 09:22:28 as **
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