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Ключевое слово protein [944 articles]

Recent papers classified by the tag protein.
  • Prediction of the structure of symmetrical protein assemblies
    Proceedings of the National Academy of Sciences (31 October 2007), 0702626104.
    by Ingemar Andre, Philip Bradley, Chu Wang, David Baker
    posted to prediction protein structure by zwang on 2007-11-07 07:44:46 as * along with 4 people and 2 groups jwm jmrivort cjeans sobolevnrm Supramolecular baker-group
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to co-evolution domain prediction protein by zwang on 2007-11-03 03:07:56 as **** along with 1 person cjeans
  • In vitro analysis of DNA-protein interactions by proximity ligation.
    Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3067-3072.
    by SM Gustafsdottir, J Schlingemann, A Rada-Iglesias, E Schallmeiner, M Kamali-Moghaddam, C Wadelius, U Landegren
    posted to dna interaction protein by zwang on 2007-04-23 04:06:15 as ** along with 2 people and 1 group jyuh dpollard EisenLab
  • Quantifying DNA-protein binding specificities by using oligonucleotide mass tags and mass spectroscopy
    PNAS, Vol. 104, No. 9. (27 February 2007), pp. 3061-3066.
    by Lingang Zhang, Simon Kasif, And C Cantor
    posted to dna massspectroscopy oligonucleotide protein by zwang on 2007-04-23 04:03:20 as ** along with 2 people and 1 group jyuh cwbrown EisenLab
  • Large-scale screening for novel low-affinity extracellular protein interactions
    Genome Res. (22 February 2008), gr.7187808.
    by Mark K Bushell, Christian Sollner, Benjamin Schuster-Boeckler, Alex Bateman, Gavin J Wright
    posted to interaction protein by zwang on 2008-04-15 05:06:59 as ** along with 9 people carlk paolomarcatili kluck niallhaslam jyuh tmmurali neils Dualsystems grahamc
  • Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Lukas Burger, Erik van Nimwegen
    posted to alignment bayesian interaction prediction protein sequence by zwang on 2008-02-17 10:10:43 as **** along with 10 people pansapiens kengg grahamc laughcry biomcgary cabbagezs roys cdeane gjuggler phoenixzxl
  • Kinetic barriers and the role of topology in Protein and RNA folding.
    Protein Sci (23 May 2008), ps.036319.108.
    by Tobin R Sosnick
    posted to rna protein interaction folding by zwang on 2008-07-01 08:50:56 as ***
  • Functional characterization of the conserved amino acids in Pop1p, the largest common protein subunit of yeast RNases P and MRP
    RNA, Vol. 12, No. 6. (1 June 2006), pp. 1023-1037.
    by Shaohua Xiao, John Hsieh, Rebecca L Nugent, Daniel J Coughlin, Carol A Fierke, David R Engelke
    posted to protein rnasep yeast by zwang on 2007-07-26 08:47:28 as ****
  • Using viral species specificity to define a critical protein/RNA interaction surface
    Genes Dev., Vol. 15, No. 10. (15 May 2001), pp. 1194-1205.
    by Glen A Coburn, Heather L Wiegand, Yibin Kang, Dona N Ho, Millie M Georgiadis, Bryan R Cullen
    posted to interaction interface protein rna surface virus by zwang on 2007-10-12 08:53:11 as ****
  • Predicting protein function from domain content
    Bioinformatics (30 June 2008), btn312.
    by Kristoffer Forslund, Erik L Sonnhammer
    posted to protein prediction domain by zwang on 2008-07-01 02:44:42 as *** along with 2 people reyez phoenixzxl
  • Computational studies of the structure, dynamics and native content of amyloid-like fibrils of ribonuclease A
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Giorgio Colombo, Massimiliano Meli, Alfonso De Simone
    posted to dynamics protein structure by zwang on 2007-10-12 07:36:37 as ** along with 2 people fullofgrace88 RamuAnandakrishnan
  • RNA visualization in live bacterial cells using fluorescent protein complementation
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 421-427.
    by Maria Valencia-Burton, Ron M Mccullough, Charles R Cantor, Natalia E Broude
    posted to bacterial fluorescent protein rna visualization by zwang on 2007-04-27 12:18:51 as **** along with 4 people austin medelyan jyuh madhadron
  • A yeast two-hybrid smart-pool-array system for protein-interaction mapping
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 405-407.
    by Fulai Jin, Larisa Avramova, Jing Huang, Tony Hazbun
    posted to interaction protein y2h yeast by zwang on 2007-04-27 12:15:28 as *** along with 2 people jyuh Dualsystems
  • De Novo Computational Design of Retro-Aldol Enzymes
    Science, Vol. 319, No. 5868. (7 March 2008), pp. 1387-1391.
    by Lin Jiang, Eric A Althoff, Fernando R Clemente, Lindsey Doyle, Daniela Rothlisberger, Alexandre Zanghellini, Jasmine L Gallaher, Jamie L Betker, Fujie Tanaka, Carlos F Barbas, Donald Hilvert, Kendall N Houk, Barry L Stoddard, David Baker
    posted to design prediction protein by zwang on 2008-03-07 03:02:39 as ** along with 11 people and 3 groups joseph_x_zhou ucbcjbm barry aalibes jwm aprasad dgront sobolevnrm davidlott msuarezdiez scienbox McCammon structural_bioinformatics baker-group
  • Interaction-Site Prediction for Protein Complexes: a Critical Assessment
    Bioinformatics (22 June 2007), btm323.
    by Huan-Xiang Zhou, Sanbo Qin
    posted to interaction prediction protein site by zwang on 2007-06-25 01:48:20 as **** along with 9 people higueruelo tjimenez bicko malcook cabbagezs niallhaslam carlescorbi marti phoenixzxl
  • Quantifying the Impact of Protein Tertiary Structure on Molecular Evolution
    Mol Biol Evol (23 May 2007), msm097.
    by Sang C Choi, Asger Hobolth, Douglas M Robinson, Hirohisa Kishino, Jeffrey L Thorne
    posted to evolution protein structure by zwang on 2007-08-09 02:54:20 as ** along with 1 person penka
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 July 2007), e178.eor.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc Marti-Renom, Baldomero Oliva
    posted to hub interaction motif protein by zwang on 2007-08-09 02:37:44 as ***
  • An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
    BMC Bioinformatics, Vol. 8 (06 August 2007), 289.
    by Brian J Holden, John W Pinney, Simon C Lovell, Grigoris D Amoutzias, David L Robertson
    posted to interaction network protein by zwang on 2007-08-09 02:05:35 as ** along with 2 people and 2 groups grahamc Tatelie ParkinsonLab_at_MaRS workshop
  • Limitations of yeast surface display in engineering proteins of high thermostability
    Protein Engineering, Design and Selection, Vol. 19, No. 5. (May 2006), pp. 211-217.
    by Park, Sheldon, Xu, Yao, Stowell, Xiaoran Fu, Gai, Feng, Saven, G Jeffery, Boder, T Eric
    posted to protein yeast ysd by zwang on 2007-07-29 11:40:32 as ***
  • The Origins of Specificity in Polyketide Synthase Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e186.
    by Mukund Thattai, Yoram Burak, Boris I Shraiman
    posted to co-evolution interaction protein by zwang on 2007-11-02 08:09:28 as *** along with 2 people marck phoenixzxl
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to interaction prediction protein sequence structure by zwang on 2007-11-02 08:05:43 as *** along with 3 people bicko chad_davis dquest
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A Marti-Renom, Baldo Oliva
    posted to hub interaction motif protein by zwang on 2007-11-02 08:03:44 as **** along with 1 person bicko
  • Systems analysis of chaperone networks in the malarial parasite Plasmodium falciparum.
    PLoS Comput Biol, Vol. 3, No. 9. (14 September 2007), pp. 1701-1715.
    by SR Pavithra, R Kumar, U Tatu
    posted to chaperone network protein systematic by zwang on 2007-11-02 08:01:48 as * along with 3 people pinney cmmorel cjeans
  • A simple selection strategy for evolving highly efficient enzymes.
    Nat Biotechnol, Vol. 25, No. 10. (October 2007), pp. 1145-1147.
    by M Neuenschwander, M Butz, C Heintz, P Kast, D Hilvert
    posted to evolution protein by zwang on 2007-10-11 17:00:55 as ** along with 2 people cjeans Jporci
  • Drug[mdash]target network
    Nat Biotech, Vol. 25, No. 10. (October 2007), pp. 1119-1126.
    by Muhammed A Yildirim, Kwang-Il Goh, Michael E Cusick, Albert-Laszlo Barabasi, Marc Vidal
    posted to interaction network protein by zwang on 2007-10-11 16:53:03 as ** along with 9 people and 1 group Yanno jyuh cannin jfr julius grahamc cjeans dejori mingzhi libr
  • Design of protein function leaps by directed domain interface evolution
    Proceedings of the National Academy of Sciences (29 April 2008), 0801097105.
    by Jin Huang, Akiko Koide, Koki Makabe, Shohei Koide
    posted to protein interface evolution domain by zwang on 2008-05-09 02:40:12 as **** along with 3 people marck choonpeng cmzmasek
  • InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes
    BMC Bioinformatics, Vol. 8 (26 October 2007), 414.
    by Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao
    posted to bacterial genome interaction prediction protein by zwang on 2007-10-29 13:11:19 as ** along with 2 people and 1 group tmmurali iris_2001 csb_journal_club_public
  • The biological impact of mass-spectrometry-based proteomics
    Nature, Vol. 450, No. 7172. (13 December 2007), pp. 991-1000.
    by Benjamin F Cravatt, Gabriel M Simon, Yates
    posted to massspectrometry protein proteome by zwang on 2007-12-13 05:28:53 as **** along with 5 people Yanno jyuh becarmson Jporci phoenixzxl
  • Protein-Protein Interactions in the Membrane: Sequence, Structural, and Biological Motifs
    Structure, Vol. 16, No. 7. (9 July 2008), pp. 991-1001.
    by David T Moore, Bryan W Berger, William F Degrado
    posted to structure protein interaction by zwang on 2008-07-14 02:46:16 as ** along with 2 people jonsta247 neils
  • The Leucine-Rich Repeat Domain of Internalin B Folds along a Polarized N-Terminal Pathway
    Structure, Vol. 16, No. 5. (7 May 2008), pp. 705-714.
    by Naomi Courtemanche, Doug Barrick
    posted to protein domain by zwang on 2008-06-26 04:08:33 as **
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to structure review protein network interaction by zwang on 2008-07-16 04:11:11 as **** along with 5 people phoenixzxl paolomarcatili grahamc neils Evangelia
  • Imaging mass spectrometry of proteins and peptides: 3D volume reconstruction
    Nature Methods, Vol. 5, No. 1., pp. 101-108.
    by Malin Andersson, Reid M Groseclose, Ariel Y Deutch, Richard M Caprioli
    posted to massspectrometry peptide protein protocol by zwang on 2007-12-30 15:28:43 as **** along with 1 person jyuh
  • Modeling of protein binary complexes using structural mass spectrometry data
    Protein Sci, Vol. 17, No. 1. (1 January 2008), pp. 79-94.
    by Amisha JK Kamal, Mark R Chance
    posted to complex massspectrometry protein structure by zwang on 2007-12-22 03:02:36 as ****
  • A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Arun K Ramani, Zhihua Li, Traver G Hart, Mark W Carlson, Daniel R Boutz, Edward M Marcotte
    posted to rna protein ortholog interaction by zwang on 2008-06-13 12:18:37 as ** along with 7 people and 1 group ptrobajo grahamc ardalby giovanni tmmurali biomcgary phoenixzxl OPIG
  • Synthetic antibodies for specific recognition and crystallization of structured RNA
    Proceedings of the National Academy of Sciences, Vol. 105, No. 1. (8 January 2008), pp. 82-87.
    by Jing-Dong Ye, Valentina Tereshko, John K Frederiksen, Akiko Koide, Frederic A Fellouse, Sachdev S Sidhu, Shohei Koide, Anthony A Kossiakoff, Joseph A Piccirilli
    posted to antibody protein rna structure by zwang on 2008-01-10 14:30:57 as ***
  • GroEL stimulates protein folding through forced unfolding
    Nature Structural & Molecular Biology, Vol. 15, No. 3. (02 March 2008), pp. 303-311.
    by Zong Lin, Damian Madan, Hays S Rye
    posted to chaperone folding protein by zwang on 2008-03-06 14:00:12 as ** along with 4 people hsekiguc aalibes choonpeng cactus
  • Fluorescence Proteins, Live-Cell Imaging, and Mechanobiology: Seeing Is Believing
    Annual Review of Biomedical Engineering, Vol. 10, No. 1. (2008), pp. 1-38.
    by Yingxiao Wang, John YJ Shyy, Shu Chien
    posted to protein fluorescent by zwang on 2008-07-23 07:11:18 as **
  • Conformational entropy in molecular recognition by proteins
    Nature, Vol. 448, No. 7151., pp. 325-329.
    by Kendra K Frederick, Michael S Marlow, Kathleen G Valentine, Joshua A Wand
    posted to molecularrecognition protein by zwang on 2007-08-18 15:47:14 as * along with 5 people cactus Jporci jlh64 dmobley psique
  • In Search of the Biological Significance of Modular Structures in Protein Networks
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e107.
    by Zhi Wang, Jianzhi Zhang
    posted to network protein structure by zwang on 2007-08-18 15:17:14 as *** along with 6 people and 2 groups pinney jfr grahamc massivemayhem cjeans cabbagezs Bioinformatics ParkinsonLab_at_MaRS
  • High-throughput fluorescent-based optimization of eukaryotic membrane protein overexpression and purification in Saccharomyces cerevisiae
    PNAS, Vol. 104, No. 35. (28 August 2007), pp. 13936-13941.
    by Simon Newstead, Hyun Kim, Gunnar von Heijne, So Iwata, David Drew
    posted to eukaryota fluorescent protein purification yeast by zwang on 2007-08-29 04:48:42 as *** along with 1 person happy_manatee
  • In vivo and in vitro protein solubility assays using split GFP
    Nature Methods, Vol. 3, No. 10. (21 September 2006), pp. 845-854.
    by Stéphanie Cabantous, Geoffrey S Waldo
    posted to protein invivo invitro expression by zwang on 2008-07-23 02:04:28 as ** along with 2 people jyuh yeastyboy
  • Footprinting protein-DNA complexes using the hydroxyl radical
    Nat. Protocols, Vol. 3, No. 6. (June 2008), pp. 1092-1100.
    by Swapan S Jain, Thomas D Tullius
    posted to protein dna complex by zwang on 2008-07-04 03:34:52 as **
  • Genome-wide mapping of allele-specific protein-DNA interactions in human cells
    Nature Methods, Vol. 5, No. 4. (16 March 2008), pp. 307-309.
    by Nathaniel D Maynard, Jing Chen, Rhona K Stuart, Jian-Bing Fan, Bing Ren
    posted to dna genome-wide interaction protein by zwang on 2008-04-02 07:26:10 as ** along with 3 people inesdesantiago eskay jyuh
  • Evolution of Function in the “Two Dinucleotide Binding Domains” Flavoproteins
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e121.
    by Sunil Ojha, Elaine C Meng, Patricia C Babbitt
    posted to binding domain evolution interaction protein site by zwang on 2007-08-29 02:31:54 as *** along with 3 people and 2 groups barry Einat mdimon structural_bioinformatics Bioinformatics
  • Protein-Protein Interaction Hotspots Carved into Sequences.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Yanay Ofran, Burkhard Rost
    posted to insilico interaction prediction protein sequence by zwang on 2007-08-29 02:25:39 as *** along with 7 people and 3 groups higueruelo bicko dchughes grahamc cjeans Jporci Pao-Yang G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • Unequal evolutionary conservation of human protein interactions in interologous networks
    Genome Biology, Vol. 8 (29 May 2007), R95.
    by Kevin R Brown, Igor Jurisica
    posted to evolution interaction network protein by zwang on 2007-06-05 09:43:50 as ** along with 2 people and 1 group grahamc winterschlaefer ParkinsonLab_at_MaRS
  • NucPred--Predicting nuclear localization of proteins
    Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1159-1160.
    by Markus Brameier, Andrea Krings, Robert M Maccallum
    posted to localization nuclear prediction protein by zwang on 2007-05-10 08:12:27 as ** along with 1 person neils
  • Genome-wide analysis identifies a general requirement for polarity proteins in endocytic traffic
    Nature Cell Biology, Vol. 9, No. 9. (19 August 2007), pp. 1066-1073.
    by Zita Balklava, Saumya Pant, Hanna Fares, Barth D Grant
    posted to genome-wide protein by zwang on 2007-09-04 12:58:26 as *
  • Protein subcellular relocalization: a new perspective on the origin of novel genes
    Trends in Ecology & Evolution, Vol. 22, No. 7. (July 2007), pp. 338-344.
    by Ashley S Byun-Mckay, R Geeta
    posted to gene localization protein by zwang on 2007-08-18 08:58:16 as *** along with 2 people cjeans Jporci
  • High-throughput identification of Interacting Protein-Protein Binding Sites
    BMC Bioinformatics, Vol. 8 (27 June 2007), 223.
    by Jo-Lan Chung, Wei Wang, Philip E Bourne
    posted to binding interaction prediction protein site svm by zwang on 2007-08-27 08:57:42 as ***** along with 3 people and 1 group bicko grahamc Evangelia ParkinsonLab_at_MaRS
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