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Ключевое слово quantitation [50 articles]

Recent papers classified by the tag quantitation.
  • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
    Anal Biochem, Vol. 72 (7 May 1976), pp. 248-254.
    by MM Bradford
    posted to protein quantitation by vladimirov on 2008-03-14 12:56:55 as ** along with 1 person nina5577
  • Use of Voigt lineshape for quantification of in vivo 1H spectra.
    Magn Reson Med, Vol. 37, No. 5. (May 1997), pp. 651-657.
    by I Marshall, J Higinbotham, S Bruce, A Freise
    posted to mrs quantitation by sparfait on 2007-02-13 08:52:39 as ***
  • A novel feature-tracking echocardiographic method for the quantitation of regional myocardial function: validation in an animal model of ischemia-reperfusion.
    J Am Coll Cardiol, Vol. 51, No. 6. (12 February 2008), pp. 651-659.
    by B Pirat, DS Khoury, CJ Hartley, L Tiller, L Rao, DG Schulz, SF Nagueh, WA Zoghbi
    posted to animal echocardiography function ischemia model myocardial quantitation reperfusion ultrasound by sjakov on 2008-03-11 16:02:09 as ** along with 1 group VetRadiology
  • A quantitative analysis software tool for mass spectrometry–based proteomics
    Nature Methods, Vol. 5, No. 4. (16 March 2008), pp. 319-322.
    by Sung K Park, John D Venable, Tao Xu, John R Yates
    posted to census label-free proteomics quantification quantitation software by olberd on 2008-04-22 15:24:54 as *** along with 2 people nuin jyuh
  • Simultaneous Qualitative and Quantitative Analysis of theEscherichia coli Proteome: A Sweet Tale
    Mol Cell Proteomics, Vol. 5, No. 4. (1 April 2006), pp. 589-607.
    by Jeffrey C Silva, Richard Denny, Craig Dorschel, Marc V Gorenstein, Guo-Zhong Li, Keith Richardson, Daniel Wall, Scott J Geromanos
    posted to quantitation quantification proteomics normalization mse by olberd on 2008-05-05 14:14:03 as read
  • Chemical probes and tandem mass spectrometry: a strategy for the quantitative analysis of proteomes and subproteomes.
    Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 66-75.
    by H Zhang, W Yan, R Aebersold
    posted to quantitation quantification proteomics labelled by olberd on 2008-06-12 00:52:43 as **
  • Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples
    Computational Life Sciences (2005), pp. 151-162.
    by Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G Huber, Bettina M Mayr, Christoph L Klein
    posted to quantitation quantification proteomics openms by olberd on 2008-05-04 15:29:22 as read
  • Capture and analysis of quantitative proteomic data
    PROTEOMICS, Vol. 9999, No. 9999. (2007), NA.
    by King W Lau, Andrew R Jones, Neil Swainston, Jennifer A Siepen, Simon J Hubbard
    posted to software quantitation quantification proteomics by olberd on 2008-05-24 13:11:19 as ** along with 2 people jyuh dullhunk
  • A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data
    Research in Computational Molecular Biology (2007), pp. 473-487.
    by Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert
    posted to quantitation quantification proteomics openms by olberd on 2008-05-04 15:26:40 as read along with 1 person nedwards
  • Absolute Quantification of Proteins by LCMSE: A Virtue of Parallel ms Acquisition
    Mol Cell Proteomics, Vol. 5, No. 1. (1 January 2006), pp. 144-156.
    by Jeffrey C Silva, Marc V Gorenstein, Guo-Zhong Li, Johannes P Vissers, Scott J Geromanos
    posted to quantitation quantification proteomics mse absolute by olberd on 2008-05-05 14:10:56 as read along with 1 person nedwards
  • Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution muLC-MS data.
    Anal Chem, Vol. 80, No. 4. (15 February 2008), pp. 961-971.
    by GL Finney, AR Blackler, MR Hoopmann, JD Canterbury, CC Wu, MJ MacCoss
    posted to software quantitation quantification proteomics label-free crawdad by olberd on 2008-04-22 15:20:22 as ** along with 1 person jyuh
  • Comparative LC-MS: a landscape of peaks and valleys.
    Proteomics, Vol. 8, No. 4. (February 2008), pp. 731-749.
    by AH America, JH Cordewener
    posted to software review quantitation quantification proteomics by olberd on 2008-05-24 13:06:09 as ** along with 1 person jyuh
  • Quantitative Proteomic Analysis of Drug-Induced Changes in Mycobacteria
    J. Proteome Res., Vol. 5, No. 1. (6 January 2006), pp. 54-63.
    by MA Hughes, JC Silva, SJ Geromanos, CA Townsend
    posted to quantitation quantification proteomics mse by olberd on 2008-05-05 14:08:43 as read
  • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
    Genome Biol, Vol. 3, No. 7. (18 June 2002)
    by J Vandesompele, K De Preter, F Pattyn, B Poppe, N Van Roy, A De Paepe, F Speleman
    posted to quantitation quantification normalization by olberd on 2008-05-05 14:06:04 as read along with 6 people and 1 group ecattell jfr cdawson qfwills aubinhon rschnee GIG
  • An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 51-61.
    by LN Mueller, MY Brusniak, DR Mani, R Aebersold
    posted to software review quantitation quantification proteomics labelled label-free by olberd on 2008-04-22 15:04:50 as **** along with 4 people nuin jyuh raiyar nedwards
  • Quantitative Proteomic Analysis by Accurate Mass Retention Time Pairs
    Anal. Chem., Vol. 77, No. 7. (1 April 2005), pp. 2187-2200.
    by JC Silva, R Denny, CA Dorschel, M Gorenstein, IJ Kass, GZ Li, T Mckenna, MJ Nold, K Richardson, P Young, S Geromanos
    posted to quantitation quantification proteomics mse label-free by olberd on 2008-06-12 02:27:10 as **
  • MapQuant: open-source software for large-scale protein quantification.
    Proteomics, Vol. 6, No. 6. (March 2006), pp. 1770-1782.
    by KC Leptos, DA Sarracino, JD Jaffe, B Krastins, GM Church
    posted to software quantitation quantification proteomics processing mapquant by olberd on 2008-05-08 15:53:43 as ***
  • Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents.
    Mol Cell Proteomics, Vol. 3, No. 12. (December 2004), pp. 1154-1169.
    by PL Ross, YN Huang, JN Marchese, B Williamson, K Parker, S Hattan, N Khainovski, S Pillai, S Dey, S Daniels, S Purkayastha, P Juhasz, S Martin, M Bartlet-Jones, F He, A Jacobson, DJ Pappin
    posted to quantitation quantification proteomics labelled itraq by olberd on 2008-06-12 02:02:48 as *****
  • Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments
    Brief Bioinform (28 September 2007), bbm046.
    by Jason W Wong, Matthew J Sullivan, Gerard Cagney
    posted to review quantitation quantification proteomics label-free by olberd on 2008-04-22 15:11:09 as *** along with 2 people jyuh neils
  • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    Mol Cell Proteomics (20 May 2002), M200025-MCP200.
    by Shao-En Ong, Blagoy Blagoev, Irina Kratchmarova, Dan B Kristensen, Hanno Steen, Akhilesh Pandey, Matthias Mann
    posted to silac quantitation quantification proteomics labelled by olberd on 2008-06-12 01:53:52 as *****
  • A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen.
    Proteomics, Vol. 8, No. 5. (March 2008), pp. 994-999.
    by JM Asara, HR Christofk, LM Freimark, LC Cantley
    posted to label-free msms_tic proteomics quantification quantitation silac spectral-counting by olberd on 2008-04-22 14:24:44 as read along with 1 person jyuh
  • Correlation between Protein and mRNA Abundance in Yeast
    Mol. Cell. Biol., Vol. 19, No. 3. (1 March 1999), pp. 1720-1730.
    by Steven P Gygi, Yvan Rochon, Robert B Franza, Ruedi Aebersold
    posted to estimate protein quantitation by nicoleq on 2007-03-08 23:47:13 as ** along with 2 people bpcusack caseybrown
  • Quantitative Profile of Five Murine Core Proteomes Using Label-free Functional Proteomics.
    Mol Cell Proteomics, Vol. 6, No. 9. (September 2007), pp. 1560-1573.
    by PR Cutillas, B Vanhaesebroeck
    posted to label-free ms quantitation by js7814 on 2007-09-23 22:10:45 as ** along with 3 people nuin jyuh nedwards
  • Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics
    Mol Cell Proteomics, Vol. 4, No. 10. (1 October 2005), pp. 1487-1502.
    by William M Old, Karen Meyer-Arendt, Lauren Aveline-Wolf, Kevin G Pierce, Alex Mendoza, Joel R Sevinsky, Katheryn A Resing, Natalie G Ahn
    posted to label-free ms quantitation by js7814 on 2007-09-23 22:09:01 as ** along with 3 people nuin kentsis nedwards
  • Quantitative RT-PCR: pitfalls and potential.
    BioTechniques, Vol. 26, No. 1. (January 1999)
    by WM Freeman, SJ Walker, KE Vrana
    posted to time rt-pcr real quantitative quantitation qpcr pcr by fhsantanna on 2008-06-23 21:27:36 as **
  • A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1401-1414.
    by P Landgraf, M Rusu, R Sheridan, A Sewer, N Iovino, A Aravin, S Pfeffer, A Rice, AO Kamphorst, M Landthaler, C Lin, ND Socci, L Hermida, V Fulci, S Chiaretti, R Foà, J Schliwka, U Fuchs, A Novosel, RU Müller, B Schermer, U Bissels, J Inman, Q Phan, M Chien, DB Weir, R Choksi, G De Vita, D Frezzetti, HI Trompeter, V Hornung, G Teng, G Hartmann, M Palkovits, R Di Lauro, P Wernet, G Macino, CE Rogler, JW Nagle, J Ju, FN Papavasiliou, T Benzing, P Lichter, W Tam, MJ Brownstein, A Bosio, A Borkhardt, JJ Russo, C Sander, M Zavolan, T Tuschl
    posted to quantitation mirna expression cloning bayesian atlas by delenca on 2008-07-08 18:50:39 as ** along with 10 people and 2 groups yoonk caseybrown giovenko jyuh jfr andersbj rahulthadani xiuminyan heliopais maralena Bioinformatics microRNA
  • Computational analysis of small RNA cloning data
    Methods, Vol. 44, No. 1. (January 2008), pp. 13-21.
    by Philipp Berninger, Dimos Gaidatzis, Erik van Nimwegen, Mihaela Zavolan
    posted to quantitation mirna methods expression cloning bayesian by delenca on 2008-07-08 19:01:01 as ** along with 2 people jyuh jfr
  • Quantitation of DNA and RNA
    Cold Spring Harbor Protocols, Vol. 2007, No. 22. (1 November 2007), pdb.ip47.
    by Carlos F Barbas, Dennis R Burton, Jamie K Scott, Gregg J Silverman
    posted to dna laboratory method methods molecular protocol protocols quantitation rna by dacrotty on 2008-01-25 15:45:07 as read
  • Real-time PCR for mRNA quantitation.
    Biotechniques, Vol. 39, No. 1. (July 2005), pp. 75-85.
    by ML Wong, JF Medrano
    posted to pcr quantitation review by chenlc03 on 2006-11-06 15:15:53 as *** along with 1 person qfwills
  • Transient heterogeneity in extracellular protease production by Bacillus subtilis
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Jan-Willem Veening, Oleg A Igoshin, Robyn T Eijlander, Reindert Nijland, Leendert W Hamoen, Oscar P Kuipers
    posted to subtilis quantitation modeling by brianb on 2008-05-08 19:13:29 as ** along with 2 people margaritis balabu
  • Investigation of protein tyrosine phosphatase 1B function by quantitative proteomics.
    Molecular & cellular proteomics : MCP (31 May 2008)
    by Philipp Mertins, H Christian C Eberl, Jörg Renkawitz, Jesper V V Olsen, Michel L L Tremblay, Matthias Mann, Axel Ullrich, Henrik Daub
    posted to quantitation proteomics phosphorylation by brianb on 2008-06-04 15:53:45 as **
  • MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features
    Computational Biology and Chemistry, Vol. In Press, Corrected Proof
    by Matthew E Monroe, Jason L Shaw, Don S Daly, Joshua N Adkins, Richard D Smith
    posted to quantitation proteomics bioinformatics by brianb on 2008-04-30 02:09:13 as **
  • Quantitative Analysis of Pathways Controlling Extrinsic Apoptosis in Single Cells
    Molecular Cell, Vol. 30, No. 1. (11 April 2008), pp. 11-25.
    by John G Albeck, John M Burke, Bree B Aldridge, Mingsheng Zhang, Douglas A Lauffenburger, Peter K Sorger
    posted to signaling quantitation proteomics modeling apoptosis by brianb on 2008-05-08 19:09:55 as ** along with 1 person burkey
  • High confidence determination of specific protein-protein interactions using quantitative mass spectrometry.
    Current opinion in biotechnology (27 June 2008)
    by Michiel Vermeulen, Nina C C Hubner, Matthias Mann
    posted to quantitation proteomics interaction by brianb on 2008-07-03 16:06:53 as **
  • A Computational Strategy to Analyze Label-Free Temporal Bottom-Up Proteomics Data
    J. Proteome Res. (29 April 2008)
    by Xiuxia Du, Stephen J Callister, Nathan P Manes, Joshua N Adkins, Roxana A Alexandridis, Xiaohua Zeng, Jung H Roh, William E Smith, Timothy J Donohue, Samuel Kaplan, Richard D Smith, Mary S Lipton
    posted to quantitation proteomics bioinformatics by brianb on 2008-04-30 02:03:41 as *** along with 1 person jyuh
  • Targeted comparative proteomics by liquid chromatography/matrix-assisted laser desorption/ionization triple-quadrupole mass spectrometry.
    Rapid communications in mass spectrometry : RCM, Vol. 20, No. 5. (2006), pp. 904-910.
    by JE Melanson, KA Chisholm, DM Pinto
    posted to quantitation proteomics formaldehyde by brianb on 2008-06-06 05:06:54 as **
  • Protein Quantification by Isotope Dilution Mass Spectrometry of Proteolytic Fragments: Cleavage Rate and Accuracy
    Anal. Chem. (30 April 2008)
    by Cristian G Arsene, Rüdiger Ohlendorf, William Burkitt, Caroline Pritchard, André Henrion, Gavin, David M Bunk, Bernd Güttler
    posted to quantitation proteomics by brianb on 2008-04-30 16:37:51 as ***
  • High-coverage quantitative proteomics using amine-specific isotopic labeling.
    Proteomics, Vol. 6, No. 16. (August 2006), pp. 4466-4474.
    by JE Melanson, SL Avery, DM Pinto
    posted to quantitation proteomics formaldehyde by brianb on 2008-06-06 04:58:05 as **
  • Mass spectrometric quantification of asparagine synthetase in circulating leukemia cells from acute lymphoblastic leukemia patients.
    Journal of proteomics, Vol. 71, No. 1. (30 April 2008), pp. 61-70.
    by SE Abbatiello, YX Pan, M Zhou, AS Wayne, TD Veenstra, SP Hunger, MS Kilberg, JR Eyler, NG Richards, TP Conrads
    posted to quantitation proteomics by brianb on 2008-06-12 14:32:35 as **
  • Heat-Shock Response in Arabidopsis thaliana Explored by Multiplexed Quantitative Proteomics Using Differential Metabolic Labeling
    J. Proteome Res., Vol. 7, No. 2. (1 February 2008), pp. 780-785.
    by Magnus Palmblad, Davinia J Mills, Laurence V Bindschedler
    posted to time-course quantitation proteomics by brianb on 2008-05-17 01:04:58 as **
  • Multiple Reaction Monitoring of mTRAQ-Labeled Peptides Enables Absolute Quantification of Endogenous Levels of a Potential Cancer Marker in Cancerous and Normal Endometrial Tissues
    J. Proteome Res. (17 July 2008)
    by Leroi V Desouza, Adrian M Taylor, Wei Li, Marjorie S Minkoff, Alexander D Romaschin, Terence J Colgan, Michael KW Siu
    posted to quantitation proteomics by brianb on 2008-07-22 15:34:36 as **
  • Protein abundance profiling of the Escherichia coli cytosol
    BMC Genomics, Vol. 9 (27 February 2008), 102.
    by Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, Ulrich F Hartl, Michael J Kerner, Dmitrij Frishman
    posted to quantitation proteomics by brianb on 2008-06-08 04:08:16 as ** along with 2 people Retchless osilander
  • Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring.
    Molecular & cellular proteomics : MCP (13 April 2008)
    by Vinzenz Lange, Johan A A Malmström, John Didion, Nichole L L King, Björn P P Johansson, Juliane Schäfer, Jonathan Rameseder, Chee-Hong H Wong, Eric W W Deutsch, Mi-Youn Y Brusniak, Peter Bühlmann, Lars Björck, Bruno Domon, Ruedi Aebersold
    posted to quantitation proteomics prokaryote by brianb on 2008-05-08 17:58:33 as ** along with 1 person kentsis
  • Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes.
    Nature protocols, Vol. 1, No. 2. (2006), pp. 1029-1043.
    by JM Pratt, DM Simpson, MK Doherty, J Rivers, SJ Gaskell, RJ Beynon
    posted to quantitation proteomics by brianb on 2008-06-06 20:34:41 as **
  • MULTI-PATHWAY MODEL ENABLES PREDICTION OF KINASE INHIBITOR CROSS-TALK EFFECTS ON MIGRATION OF HER2-OVEREXPRESSING MAMMARY EPITHELIAL CELLS
    Mol Pharmacol (18 March 2008), mol.107.043794.
    by Neil Kumar, Raffi Afeyan, Hyung-Do Kim, Douglas A Lauffenburger
    posted to quantitation proteomics modeling by brianb on 2008-04-28 01:39:33 as **
  • Protein Quantification by Selective Isolation and Fragmentation of Isotopic Pairs Using FT-ICR MS.
    Journal of the American Society for Mass Spectrometry (8 April 2008)
    by Hannah Johnson, Stephen C C Wong, Deborah M M Simpson, Robert J Beynon, Simon J J Gaskell
    posted to quantitation proteomics by brianb on 2008-06-06 21:37:26 as **
  • OpenMS - An open-source software framework for mass spectrometry
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Marc Sturm, Andreas Bertsch, Clemens Groepl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole S Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
    posted to quantitation proteomics bioinformatics by brianb on 2008-06-09 13:23:59 as ** along with 4 people groepl olberd jyuh neils
  • Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT.
    Molecular & cellular proteomics : MCP, Vol. 6, No. 8. (August 2007), pp. 1416-1427.
    by J Rivers, DM Simpson, DH Robertson, SJ Gaskell, RJ Beynon
    posted to quantitation proteomics by brianb on 2008-06-06 20:32:17 as **
  • Time Series Proteome Profiling To Study Endoplasmic Reticulum Stress Response
    J. Proteome Res. (25 April 2008)
    by Michelle Mintz, Adeline Vanderver, Kristy J Brown, Joseph Lin, Zuyi Wang, Christine Kaneski, Raphael Schiffmann, Kanneboyina Nagaraju, Eric P Hoffman, Yetrib Hathout
    posted to time-course silac quantitation proteomics by brianb on 2008-04-26 04:30:09 as **
  • i-Tracker: For quantitative proteomics using iTRAQTM
    BMC Genomics, Vol. 6, No. 1. (2005)
    by Ian Shadforth, Tom Dunkley, Kathryn Lilley, Conrad Bessant
    posted to proteomics quantitation by brianb on 2008-04-12 20:22:09 as **
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