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Ключевое слово r [301 articles]

Recent papers classified by the tag r.
  • notes ROCR: visualizing classifier performance in R.
    Bioinformatics (11 August 2005)
    by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
    posted to r roc stat by za on 2007-02-14 12:53:34 as *** along with 9 people and 4 groups BragilMassoud ana barry Ayest lyongu marcius schlauchi gokhan bertelsen structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • notes MedlineR: an open source library in R for Medline literature data mining.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3659-3661.
    by SM Lin, P McConnell, KF Johnson, J Shoemaker
    posted to r by za on 2007-02-14 12:58:10 as ** along with 5 people and 2 groups cisevol druvus irenas Enro BioGeek BergmanLab dbk-lab
  • BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.
    Bioinformatics (27 September 2006)
    by Xiaohui Chen, Ming Chen, Kaida Ning
    posted to bayesian bayesnet gene network r regulation by wnpx on 2006-11-18 18:09:29 as ** along with 6 people jyuh frohike jhatrimatri shigepong ramakris waszak
  • From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Rainer O Rhein, Korbinian Strimmer
    posted to inference r by wnpx on 2007-08-06 16:19:58 as ** along with 3 people GeeSharpMinor jo_davies heliopais
  • Fast manipulation of multi-dimensional arrays in Matlab
    (2002)
    by K Murphy
    posted to implementation matlab programming r by wnpx on 2006-07-13 18:00:49 as **
  • Proposed design for gR, a graphical models toolkit for R
    by Kevin P Murphy
    posted to bayesian bayesnet design r software by wnpx on 2006-07-13 17:55:43 as ** along with 2 people markusd CarlosSantos
  • Pvclust: an R package for assessing the uncertainty in hierarchical clustering.
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1540-1542.
    by R Suzuki, H Shimodaira
    posted to clustering hierarchical r software by wnpx on 2006-09-02 11:32:40 as ** along with 8 people druvus jfr maryee josepe ghattem elfar quianominorleo briordan
  • MDQC: a new quality assessment method for microarrays based on quality control reports
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3162-3169.
    by Cohen, Zsuzsanna Hollander, Enqing Shen, Ruben H Zamar, Robert Balshaw, Andreas Scherer, Bruce Mcmanus, Paul Keown, Robert W Mcmaster, Raymond T Ng
    posted to microarray quality r software by waszak on 2007-12-10 14:29:13 as ** along with 2 people jyuh aviad_work
  • A robust statistical method for case-control association testing with copy number variation.
    Nature genetics (7 September 2008)
    by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, Richard Redon, Jonathan Marchini, David Clayton, Matthew E E Hurles
    posted to software snp r ld gmm em cnv associationstudy algorithm affymetrix by waszak on 2008-10-08 15:01:08 as ** along with 9 people and 1 group caseybrown Zephyrus dakelley buyske misonneh djkt rdiaz Stew jyuh Roswell Cancer Crosstalk
  • oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language
    Bioinformatics (17 September 2007), btm469.
    by Remo Sanges, Francesca Cordero, Raffaele A Calogero
    posted to affymetrix bioconductor r software by waszak on 2007-12-10 14:27:34 as ** along with 2 people jyuh rdiaz
  • RReportGenerator : Automatic reports from routine statistical analysis using R
    Bioinformatics (24 November 2007), btm556.
    by Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, David Kieffer, Anne-Laure Morand, Laurent Brino, Olivier Poch
    posted to affymetrix r by waszak on 2007-12-03 20:39:09 as ** along with 7 people natstreet druvus jyuh jfr mailund maralena GeeSharpMinor
  • A comparison study: applying segmentation to array CGH data for downstream analyses
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4084-4091.
    by Hanni Willenbrock, Jane Fridlyand
    posted to software r cnp cgh algorithm acgh by waszak on 2008-10-08 15:15:21 as ** along with 2 people shigepong ellakat
  • Transcript mapping with high-density oligonucleotide tiling arrays
    Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 1963-1970.
    by Wolfgang Huber, Joern Toedling, Lars M Steinmetz
    posted to tiling software r normalization microarray algorithm by waszak on 2008-10-08 15:07:35 as ** along with 6 people raiyar johncumbers jtaylor ptrobajo tresch GeeSharpMinor
  • An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays
    Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1278-1285.
    by Naoaki Ono, Shingo Suzuki, Chikara Furusawa, Tomoharu Agata, Akiko Kashiwagi, Hiroshi Shimizu, Tetsuya Yomo
    posted to algorithm microarray normalization r by waszak on 2008-05-17 18:08:10 as ** along with 2 people heliopais giovenko
  • beadarray: R classes and methods for Illumina bead-based data
    Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2183-2184.
    by Mark J Dunning, Mike L Smith, Matthew E Ritchie, Simon Tavare
    posted to beadarray illumina r by Stew on 2008-08-04 17:27:25 as ** along with 4 people heliopais raylim srp33 jyuh
  • R/parallel - speeding up bioinformatics analysis with R
    BMC Bioinformatics, Vol. 9 (22 September 2008), 390.
    by Gonzalo Vera, Ritsert C Jansen, Remo L Suppi
    posted to r by shikin on 2008-10-02 10:58:33 as **** along with 14 people and 1 group dakelley chad_davis ptrobajo pengchy robertlischke chrisamiller cisevol druvus renatomilani rdiaz nuin GeeSharpMinor neils jandot BergmanLab
  • Data Analysis and Graphics Using R: An Example-based Approach (Cambridge Series in Statistical and Probabilistic Mathematics)
    (26 December 2006)
    by John Maindonald, John Braun
    posted to r software-guide by sfcheung on 2008-08-15 14:31:43 as ** along with 2 people bigbossman quianominorleo
  • Fractals and Statistics: an R package called ifs
    by Stefano M Iacus, Davide La Torre
    posted to fractal ifs r statistics by scis0000001 on 2006-09-07 15:01:54 as **
  • RPP13 is a simple locus in Arabidopsis thaliana for alleles that specify downy mildew resistance to different avirulence determinants in Peronospora parasitica.
    Plant J, Vol. 21, No. 2. (January 2000), pp. 177-188.
    by PD Bittner-Eddy, IR Crute, EB Holub, JL Beynon
    posted to r rpp13 by saru on 2007-03-05 10:37:58 as **
  • An evolutionarily conserved mediator of plant disease resistance gene function is required for normal Arabidopsis development.
    Dev Cell, Vol. 2, No. 6. (June 2002), pp. 807-817.
    by BF Holt, DC Boyes, M Ellerström, N Siefers, A Wiig, S Kauffman, MR Grant, JL Dangl
    posted to development r by saru on 2007-06-14 09:04:55 as **
  • Type III Effector Activation via Nucleotide Binding, Phosphorylation, and Host Target Interaction
    PLoS Pathogens, Vol. 3, No. 3. (1 March 2007), e48.
    by Darrell Desveaux, Alex U Singer, Ai-Jiuan Wu, Brian C Mcnulty, Laura Musselwhite, Zachary Nimchuk, John Sondek, Jeffery L Dangl
    posted to avr r structure by saru on 2007-05-01 06:41:10 as **
  • Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily.
    Plant J, Vol. 20, No. 3. (November 1999), pp. 317-332.
    by BC Meyers, AW Dickerman, RW Michelmore, S Sivaramakrishnan, BW Sobral, ND Young
    posted to r by saru on 2008-01-30 02:24:06 as **
  • Transgressive segregation reveals two Arabidopsis TIR-NB-LRR resistance genes effective against Leptosphaeria maculans, causal agent of blackleg disease
    The Plant Journal, Vol. 46, No. 2. (April 2006), pp. 218-230.
    by Jens Staal, Maria Kaliff, Svante Bohman, Christina Dixelius
    posted to r by saru on 2007-01-28 01:05:07 as read
  • Tracing the ancient origins of plant innate immunity
    Trends in Plant Science, Vol. In Press, Corrected Proof
    by Jens Staal, Christina Dixelius
    posted to nonhost r review by saru on 2007-07-25 01:37:31 as **
  • The functions of plant TIR domains.
    Sci STKE, Vol. 2007, No. 401. (15 September 2007)
    by TM Burch-Smith, SP Dinesh-Kumar
    posted to domain r by saru on 2007-10-24 00:58:10 as **
  • EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels.
    Plant J (23 January 2007)
    by Thomas Eulgem, Tokuji Tsuchiya, Xiao-Jun J Wang, Britt Beasley, Alayne Cuzick, Mahmut Tör, Tong Zhu, John M M McDowell, Eric Holub, Jeffery L L Dangl
    posted to edm2 r rpp7 by saru on 2007-02-16 01:18:02 as read
  • The Pto kinase of tomato, which regulates plant immunity, is repressed by its myristoylated N terminus.
    J Biol Chem, Vol. 281, No. 36. (8 September 2006), pp. 26578-26586.
    by VM Andriotis, JP Rathjen
    posted to pto r by saru on 2007-02-27 02:02:00 as **
  • Signaling requirements and role of salicylic acid in HRT- and rrt-mediated resistance to turnip crinkle virus in Arabidopsis.
    Plant J, Vol. 40, No. 5. (December 2004), pp. 647-659.
    by AC Chandra-Shekara, D Navarre, A Kachroo, HG Kang, D Klessig, P Kachroo
    posted to hrt r by saru on 2006-10-06 08:48:39 as read
  • Recognition and response in the plant immune system.
    Annu Rev Genet, Vol. 37 (2003), pp. 579-609.
    by Z Nimchuk, T Eulgem, BF Holt, JL Dangl
    posted to r review by saru on 2008-01-23 05:02:14 as **
  • Characterization of rice mutants with enhanced susceptibility to rice blast.
    Mol Cells, Vol. 20, No. 3. (31 December 2005), pp. 385-391.
    by HK Kim, SK Lee, JI Cho, S Lee, G An, NS Jwa, BR Kim, YC Cho, SS Han, SH Bhoo, YH Lee, YK Hong, G Yi, DS Park, TR Hahn, JS Jeon
    posted to r by saru on 2007-02-26 03:50:53 as **
  • Elicitor-Mediated Oligomerization of the Tobacco N Disease Resistance Protein
    Plant Cell, Vol. 18, No. 2. (1 February 2006), pp. 491-501.
    by Pere Mestre, David C Baulcombe
    posted to n nod r by saru on 2006-08-27 00:40:56 as read
  • Accumulation of the two transcripts of the N gene, conferring resistance to tobacco mosaic virus, is probably important for N gene-dependent hypersensitive cell death.
    Plant Cell Physiol, Vol. 47, No. 2. (February 2006), pp. 254-261.
    by R Takabatake, S Seo, I Mitsuhara, S Tsuda, Y Ohashi
    posted to alternative n r by saru on 2008-01-04 15:26:35 as **
  • Analysis of alternative transcripts of the flax L6 rust resistance gene.
    Plant J, Vol. 17, No. 3. (February 1999), pp. 287-292.
    by MA Ayliffe, DV Frost, EJ Finnegan, GJ Lawrence, PA Anderson, JG Ellis
    posted to alternative l r by saru on 2008-01-21 06:34:19 as **
  • Interaction between domains of a plant NBS-LRR protein in disease resistance-related cell death.
    EMBO J, Vol. 21, No. 17. (2 September 2002), pp. 4511-4519.
    by P Moffett, G Farnham, J Peart, DC Baulcombe
    posted to r rx by saru on 2007-02-26 03:24:10 as **
  • Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: application to the Rx2 locus in potato.
    Plant J, Vol. 21, No. 1. (January 2000), pp. 73-81.
    by A Bendahmane, M Querci, K Kanyuka, DC Baulcombe
    posted to r rx by saru on 2007-02-27 01:54:28 as **
  • Fine genetic mapping of the TuNI locus causing systemic veinal necrosis by turnip mosaic virus infection in Arabidopsis thaliana
    TAG Theoretical and Applied Genetics, Vol. 110, No. 1. (30 December 2004), pp. 33-40.
    by Yo-Hei Kaneko, Tsuyoshi Inukai, Noriko Suehiro, Tomohide Natsuaki, Chikara Masuta
    posted to r tun1 by saru on 2008-01-07 03:35:47 as **
  • Genome-Wide Analysis of NBS-LRR-Encoding Genes in Arabidopsis
    Plant Cell, Vol. 15, No. 4. (1 April 2003), pp. 809-834.
    by Blake C Meyers, Alexander Kozik, Alyssa Griego, Hanhui Kuang, Richard W Michelmore
    posted to r by saru on 2006-08-08 10:31:25 as read along with 2 people and 2 groups bsmagic talponer Bioinformatics bioinplant
  • The Arabidopsis thaliana TIR-NB-LRR R-protein, RPP1A; protein localization and constitutive activation of defence by truncated alleles in tobacco and Arabidopsis
    The Plant Journal, Vol. 47, No. 6. (September 2006), pp. 829-840.
    by Michael Weaver, , Swiderski, R Michal, Li, Yan, Jones, DG Jonathan
    posted to r rpp1 by saru on 2006-10-23 02:15:08 as ** along with 1 person and 2 groups bsmagic Bioinformatics bioinplant
  • The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana
    The Plant Journal, Vol. 48, No. 2. (October 2006), pp. 165-176.
    by Bos, IB Jorunn, Kanneganti, Thirumala-Devi, Young, Carolyn, Cakir, Cahid, Huitema, Edgar, Win, Joe, Armstrong, R Miles, Birch, RJ Paul, Kamoun, Sophien
    posted to avr inf1 r r3a by saru on 2007-04-26 08:45:24 as **
  • NRG1, a CC-NB-LRR Protein, together with N, a TIR-NB-LRR Protein, Mediates Resistance against Tobacco Mosaic Virus
    Current Biology, Vol. 15, No. 10. (24 May 2005), pp. 968-973.
    by Jack R Peart, Pere Mestre, Rui Lu, Isabelle Malcuit, David C Baulcombe
    posted to n r by saru on 2007-09-26 07:56:56 as **
  • Innate immunity in plants and animals: emerging parallels between the recognition of general elicitors and pathogen-associated molecular patterns.
    Curr Opin Plant Biol, Vol. 5, No. 4. (August 2002), pp. 318-324.
    by T Nürnberger, F Brunner
    posted to r review by saru on 2008-01-23 05:00:52 as **
  • TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes
    The Plant Journal, Vol. 32, No. 1. (2002), pp. 77-92.
    by Blake C Meyers, Michele Morgante, Richard W Michelmore
    posted to r by saru on 2006-08-08 10:34:29 as ** along with 1 person kikubh
  • A Constitutive Shade-Avoidance Mutant Implicates TIR-NBS-LRR Proteins in Arabidopsis Photomorphogenic Development
    Plant Cell, Vol. 18, No. 11. (1 November 2006), pp. 2919-2928.
    by Ana Faigon-Soverna, Franklin G Harmon, Leonardo Storani, Elizabeth Karayekov, Roberto J Staneloni, Walter Gassmann, Paloma Mas, Jorge J Casal, Steve A Kay, Marcelo J Yanovsky
    posted to r by saru on 2006-12-29 04:14:54 as read
  • Plant Pathogen Recognition Mediated by Promoter Activation of the Pepper Bs3 Resistance Gene
    Science, Vol. 318, No. 5850. (26 October 2007), pp. 645-648.
    by Patrick Romer, Simone Hahn, Tina Jordan, Tina Strauss, Ulla Bonas, Thomas Lahaye
    posted to promoter r by saru on 2007-10-26 07:01:32 as **
  • High diversity of plastidial promoters in Arabidopsis thaliana.
    Mol Genet Genomics, Vol. 277, No. 6. (June 2007), pp. 725-734.
    by M Swiatecka-Hagenbruch, K Liere, T Börner
    posted to r rps4 by saru on 2007-06-19 04:58:12 as **
  • RCY1, an Arabidopsis thaliana RPP8/HRT family resistance gene, conferring resistance to cucumber mosaic virus requires salicylic acid, ethylene and a novel signal transduction mechanism.
    Plant J, Vol. 32, No. 5. (December 2002), pp. 655-667.
    by H Takahashi, J Miller, Y Nozaki, M Takeda, J Shah, S Hase, M Ikegami, Y Ehara, SP Dinesh-Kumar,
    posted to r rcy1 by saru on 2006-10-06 07:20:23 as read
  • Indirect activation of a plant nucleotide binding site-leucine-rich repeat protein by a bacterial protease.
    Proc Natl Acad Sci U S A (2 February 2007)
    by Jules Ade, Brody J J Deyoung, Catherine Golstein, Roger W W Innes
    posted to rps5 r by saru on 2007-02-07 07:13:12 as read
  • Study of Arabidopsis thaliana resistome in response to cucumber mosaic virus infection using whole genome microarray.
    Plant Mol Biol, Vol. 55, No. 4. (July 2004), pp. 501-520.
    by R Marathe, Z Guan, R Anandalakshmi, H Zhao, SP Dinesh-Kumar
    posted to r by saru on 2007-02-27 01:48:50 as ** along with 1 person talponer
  • Tobacco mosaic virus regulates the expression of its own resistance gene N.
    Plant Physiol, Vol. 135, No. 4. (August 2004), pp. 2392-2397.
    by M Levy, O Edelbaum, I Sela
    posted to n r by saru on 2007-07-07 08:49:47 as **
  • Epigenetic variation in Arabidopsis disease resistance.
    Genes Dev, Vol. 16, No. 2. (15 January 2002), pp. 171-182.
    by TL Stokes, BN Kunkel, EJ Richards
    posted to bal1 epigenetics r ssi1 by saru on 2007-02-21 01:29:33 as **
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