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Ключевое слово regulatory_network [36 articles]

Recent papers classified by the tag regulatory_network.
  • Gene regulatory networks and the evolution of animal body plans.
    Science, Vol. 311, No. 5762. (10 February 2006), pp. 796-800.
    by EH Davidson, DH Erwin
    posted to evolution grn regulatory_network by sujaikumar on 2007-03-22 10:45:47 as read along with 13 people and 4 groups eldan bayesian dpollard xico dchughes brixtonmc Liusha margaritis josepe cjeans Garamonfok jtomasch Ema EisenLab WetBiology G4ID Genetics-of-Gambling
  • Developmental gene regulatory network architecture across 500 million years of echinoderm evolution
    PNAS, Vol. 100, No. 23. (11 November 2003), pp. 13356-13361.
    by Veronica F Hinman, Albert T Nguyen, Andrew R Cameron, Eric H Davidson
    posted to evolution regulatory_network by sujaikumar on 2007-03-22 10:43:58 as ***
  • Synthetic biology: new engineering rules for an emerging discipline
    Mol Syst Biol, Vol. 2 (2006), pp. msb4100073-E1-msb4100073-E14.
    by Ernesto Andrianantoandro, Subhayu Basu, David K Karig, Ron Weiss
    posted to grn regulatory_network by sujaikumar on 2007-03-22 10:34:05 as ** along with 10 people grahamc sharatjv johncumbers mmt margaritis jrbanga jbchang nicholasflann kevinchannon jonsta247
  • Reverse engineering of regulatory networks in human B cells.
    Nature Genetics (20 March 2005)
    by Katia Basso, Adam AA Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano
    posted to genetic_network microarray regulatory_network by naegele on 2008-01-10 10:23:58 as ** along with 8 people snuppepuppan kentsis dragonrez jfr wnpx raiyar heliopais lylu
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
    posted to regulatory_network systems_biology by naegele on 2007-09-04 08:18:09 as ** along with 10 people and 6 groups siebert mapplab czeller dpollard xico nickluscombe zwang lizabeth dejori xingxu Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
  • Three cell wall mannoproteins facilitate the uptake of iron in Saccharomyces cerevisiae
    The Journal of Biological Chemistry, Vol. 276, No. 52. (22 October 2001), pp. 49244-50.
    by Olga Protchenko, Tracey Ferea, Jared Rashford, John Tiedeman, Patrick O Brown, David Botstein, Caroline C Philpott
    posted to iron_homeostasis regulatory_network yeast by naegele on 2008-01-11 09:27:24 as *
  • A hybrid Bayesian network learning method for constructing gene networks.
    Comput Biol Chem, Vol. 31, No. 5--6. (19 August 2007), pp. 361-372.
    by Mingyi Wang, Zuozhou Chen, Sylvie Cloutier
    posted to bayesian_network genetic_network graphical_models machine_learning regulatory_network structure_learning systems_biology by naegele on 2007-11-12 09:10:05 as ***** along with 2 people ramakris julianjonker
  • Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    BMC Bioinformatics, Vol. 8 (03 August 2007), 283.
    by Xiangdong Liu, Walter J Jessen, Siva Sivaganesan, Bruce J Aronow, Mario Medvedovic
    posted to bayesian chip_chip gene_expression regulatory_network systems_biology by naegele on 2007-09-04 08:24:10 as ** along with 2 people and 1 group dquest nklee ic4
  • Growing Bayesian network models of gene networks from seed genes.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by JM Peña, J Björkegren, J Tegnér
    posted to bayesian_network gene_expression genetic_network graphical_models machine_learning microarray regulatory_network structure_learning systems_biology by naegele on 2007-10-19 15:39:43 as ** along with 5 people and 1 group abhik imouthesmp wnpx ramakris heliopais ic4
  • Large-scale regulatory network analysis from microarray data: modified Bayesian network learning and association rule mining
    Decision Support Systems, Vol. 43, No. 4. (August 2007), pp. 1207-1225.
    by Zan Huang, Jiexun Li, Hua Su, George S Watts, Hsinchun Chen
    posted to association_rule_mining bayesian_network genetic_network graphical_models machine_learning microarray regulatory_network systems_biology by naegele on 2007-11-12 09:24:45 as read
  • Combining location and expression data for principled discovery of genetic regulatory network models.
    Pacific Symposium on Biocomputing (2002), pp. 437-449.
    by AJ Hartemink, DK Gifford, TS Jaakkola, RA Young
    posted to bayesian_network regulatory_network by naegele on 2008-01-16 11:48:39 as ** along with 5 people brl ldfu wnpx noano frohike
  • Modularized learning of genetic interaction networks from biological annotations and mRNA expression data
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2739-2747.
    by Phil H Lee, Doheon Lee
    posted to bayesian_network gene_expression genetic_network graphical_models machine_learning microarray regulatory_network structure_learning systems_biology by naegele on 2007-11-14 13:20:21 as read along with 3 people tvdbulck patrycja_missiuro roys
  • Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction
    Proceedings of the National Academy of Sciences (17 April 2008), 0708708105.
    by Saul Lapidus, Bo Han, Jin Wang
    posted to stochasticity regulatory_network potential noise by margaritis on 2008-04-25 15:01:52 as ** along with 4 people cactus ddcttrl biehl jjray
  • Variable-free exploration of stochastic models: a gene regulatory network example
    (6 Nov 2006)
    by Radek Erban, Thomas A Frewen, Xiao Wang, Timothy C Elston, Ronald Coifman, Boaz Nadler, Ioannis G Kevrekidis
    posted to stochastic regulatory_network coarse-grained by j_vinals on 2008-08-06 02:44:43 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Cooperativity, Sensitivity, and Noise in Biochemical Signaling
    Physical Review Letters, Vol. 100, No. 25. (2008)
    by William Bialek, Sima Setayeshgar
    posted to stochastic regulatory_network by j_vinals on 2008-08-05 16:26:54 as ** along with 1 person dchen
  • The gap gene system of Drosophila melanogaster: Model-fitting and validation.
    Ann N Y Acad Sci (12 October 2007)
    by Theodore J J Perkins
    posted to drosophila embryonic_patterning modeling regulatory_network by dpollard to the group EisenLab on 2007-10-25 01:09:03 as **
  • Computational and experimental approaches for modeling gene regulatory networks.
    Curr Pharm Des, Vol. 13, No. 14. (2007), pp. 1415-1436.
    by J Goutsias, NH Lee
    posted to review regulatory_network modeling method experimental computational by dpollard to the group EisenLab on 2007-06-14 23:48:35 as **
  • A Bacterial Cell-Cycle Regulatory Network Operating in Time and Space
    Science, Vol. 301, No. 5641. (26 September 2003), pp. 1874-1877.
    by Harley H Mcadams, Lucy Shapiro
    posted to caulobacter regulatory_network space ultrastructure by dylan77 on 2007-05-07 05:40:53 as ** along with 7 people and 1 group cerca jjray balajis nickluscombe comb lshaw fishtank EBI-regulation
  • Genetic Dissection of Transcriptional Regulation in Budding Yeast
    Science, Vol. 296, No. 5568. (26 April 2002), pp. 752-755.
    by Rachel B Brem, Gael Yvert, Rebecca Clinton, Leonid Kruglyak
    posted to eqtl qtl regulatory_network yeast by dpollard on 2007-10-31 23:48:52 as read along with 9 people and 3 groups RMGraze JAShapiro brant adepace oannes raiyar lp2 jo_davies mimulus_99 EisenLab Regulomics_UCHSC steinmetzlab
  • Rotavirus vaccine introduction in Mexico sets precedent.
    Bull World Health Organ, Vol. 83, No. 3. (March 2005)
    by T Braine
    posted to regulatory_network vaccines by cmmorel on 2006-05-13 13:19:48 as **
  • notes Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years
    Mol Biol Evol (24 December 2007), msm283.
    by Martin J Lercher, Csaba Pal
    posted to regulatory_network regulation protein_network evolution by cambray on 2008-06-10 13:53:24 as read along with 4 people and 1 group cisevol marcio dquest cjeans cis-regulatory-evolution
  • Computational methods for transcriptional regulation.
    Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 214-221.
    by ED Siggia
    posted to regulatory_network networks by Borelli on 2008-07-14 15:23:06 as ** along with 7 people and 2 groups jjray balicea nklee bertelsen barry dpollard koller Bioinformatics EisenLab
  • Cell biology: Networks, regulation, pathways
    (28 Dec 2007)
    by Gasper Tkacik, William Bialek
    posted to review regulatory_network pathway networks by Borelli on 2008-07-07 11:14:40 as **
  • Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804.
    by TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, NM Hannett, CT Harbison, CM Thompson, I Simon, J Zeitlinger, EG Jennings, HL Murray, DB Gordon, B Ren, JJ Wyrick, JB Tagne, TL Volkert, E Fraenkel, DK Gifford, RA Young
    posted to regulatory_network network chip by Borelli on 2008-07-07 15:58:32 as ** along with 26 people and 2 groups siebert dquest Takayuki kristallreiner brant camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike dbk-lab TNT
  • Biological networks
    Current Opinion in Structural Biology, Vol. 13, No. 2. (April 2003), pp. 193-202.
    by Eric Alm, Adam P Arkin
    posted to review regulatory_network networks biology by Borelli on 2008-07-14 15:03:54 as ** along with 1 person cmmorel
  • Network motifs in the transcriptional regulation network of Escherichia coli
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 64-68.
    by Shai S Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon
    posted to yeast regulatory_network networks by Borelli on 2008-07-06 19:06:43 as ** along with 13 people and 1 group ethkim hannahrajasingh jstajic jjray ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu maralena EBI-regulation
  • The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana
    PLoS Genetics, Vol. 3, No. 2. (1 February 2007), e11.
    by Dirk Walther, Roman Brunnemann, Joachim Selbig
    posted to regulatory_network athaliana arabidopsis by Borelli on 2008-07-08 14:39:06 as ** along with 5 people and 2 groups indigoviolet kengg saru braingrind byy EisenLab Plantandetc
  • DiRE: identifying distant regulatory elements of co-expressed genes
    Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W133-139.
    by Valer Gotea, Ivan Ovcharenko
    posted to regulatory_network by Borelli on 2008-07-08 09:11:01 as ** along with 1 person idonaldson
  • Gene regulatory network reconstruction by bayesian integration of prior knowledge and/or different experimental conditions.
    Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 543-572.
    by AV Werhli, D Husmeier
    posted to regulatory_network bayesian_network bayesian by Borelli on 2008-08-10 10:50:35 as ** along with 1 person jyuh
  • Topological and causal structure of the yeast transcriptional regulatory network
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 60-63.
    by Nabil Guelzim, Samuele Bottani, Paul Bourgine, Francois Kepes
    posted to yeast small_world regulatory_network protein by Borelli on 2008-07-06 19:03:52 as ** along with 2 people Takayuki karfunkel
  • A synthetic oscillatory network of transcriptional regulators.
    Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338.
    by MB Elowitz, S Leibler
    posted to regulatory_network networks motifs model by Borelli on 2008-08-16 09:57:10 as ** along with 11 people dagmar jjray austin tvdbulck msuarezdiez rklancer dgront sharatjv mhucka margaritis Grobi
  • Gene regulatory networks and embryonic specification.
    Proceedings of the National Academy of Sciences of the United States of America (15 April 2008)
    by Leroy Hood
    posted to regulatory_network by bootsy on 2008-04-21 09:58:08 as ** along with 2 people AlexanderPico maralena
  • Dynamic analysis of integrated signaling, metabolic, and regulatory networks.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by J Min Lee, EP Gianchandani, JA Eddy, JA Papin
    posted to regulatory_network quantitative_modeling analysis a by bootsy on 2008-05-18 18:51:57 as ** along with 3 people Ema roys lymxz
  • The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks
    BMC Bioinformatics, Vol. 9 (02 May 2008), 227.
    by Anatolij P Potapov, Bjorn Goemann, Edgar Wingender
    posted to regulatory_network analysis by bootsy on 2008-05-07 08:08:41 as ** along with 2 people joaocarrico shigepong
  • Evolution of Evolvability in Gene Regulatory Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112.
    by Anton Crombach, Paulien Hogeweg
    posted to regulatory_network evolution by bootsy on 2008-07-14 08:09:06 as ** along with 8 people and 1 group shoshin jdiezperezj erel10 djkt dquest Stew dlobo Ema GEB
  • Synchronous vs. Asynchronous Modeling of Gene Regulatory Networks.
    Bioinformatics (Oxford, England) (9 July 2008)
    by Abhishek Garg, Alessandro Dicara, Ioannis Xenarios, Luis Mendoza, Giovanni De D Micheli
    posted to tool systems_biology regulatory_network qualitative_modeling boolean_simulation by bootsy on 2008-07-14 08:05:54 as ** along with 1 person jyuh
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