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Ключевое слово regulon-paper [59 articles]

Recent papers classified by the tag regulon-paper.
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to regulon-paper by natstreet on 2007-10-29 15:52:27 as ** along with 23 people and 4 groups ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • Expression of the ASYMMETRIC LEAVES2 gene in the adaxial domain of Arabidopsis leaves represses cell proliferation in this domain and is critical for the development of properly expanded leaves
    The Plant Journal, Vol. 51, No. 2. (July 2007), pp. 173-184.
    by Iwakawa, Hidekazu, Iwasaki, Mayumi, Kojima, Shoko, Ueno, Yoshihisa, Soma, Teppei, Tanaka, Hirokazu, Semiarti, Endang, Machida, Yasunori, Machida, Chiyoko
    posted to regulon-paper by natstreet on 2007-10-27 22:25:00 as **
  • Novel as1 and as2 defects in leaf adaxial-abaxial polarity reveal the requirement for ASYMMETRIC LEAVES1 and 2 and ERECTA functions in specifying leaf adaxial identity
    Development, Vol. 130, No. 17. (1 September 2003), pp. 4097-4107.
    by Lin Xu, Yi Xu, Aiwu Dong, Yue Sun, Limin Pi, Yuquan Xu, Hai Huang
    posted to regulon-paper by natstreet on 2007-10-29 08:21:07 as ** along with 1 person braingrind
  • A comparative study of the genetic bases of natural variation in tomato leaf, sepal, and petal morphology
    TAG Theoretical and Applied Genetics, Vol. 109, No. 3. (2004), pp. 523-533.
    by Amy Frary, Lisa A Fritz, Steven D Tanksley
    posted to regulon-paper by natstreet on 2007-10-29 15:18:21 as **
  • Plant development: YABBYs claw to the fore
    Current Biology, Vol. 9, No. 22. (18 November 1999), pp. R861-R863.
    by John F Golz, Andrew Hudson
    posted to regulon-paper by natstreet on 2007-10-27 22:52:00 as **
  • Reconstructing dynamic regulatory maps.
    Mol Syst Biol, Vol. 3 (2007)
    by J Ernst, O Vainas, CT Harbison, I Simon, Z Bar-Joseph
    posted to regulon-paper by natstreet on 2007-10-29 16:06:13 as ** along with 6 people and 1 group okarsligil aswin mikaelhuss SeungjoonOh berthoums jo_davies Bioinformatics
  • The Populus homeobox gene ARBORKNOX1 reveals overlapping mechanisms regulating the shoot apical meristem and the vascular cambium
    Plant Molecular Biology, Vol. 61, No. 6. (2006), pp. 917-932.
    by Andrew Groover, Shawn Mansfield, Stephen Difazio, Gayle Dupper, Joseph Fontana, Ryan Millar, Yvonne Wang
    posted to regulon-paper by natstreet on 2007-09-01 13:43:34 as **
  • LONGIFOLIA1 and LONGIFOLIA2, two homologous genes, regulate longitudinal cell elongation in Arabidopsis
    Development, Vol. 133, No. 21. (1 November 2006), pp. 4305-4314.
    by Young K Lee, Gyung-Tae Kim, In-Jung Kim, Jeongmoo Park, Sang-Soo Kwak, Giltsu Choi, Won-Il Chung
    posted to regulon-paper by natstreet on 2007-10-23 11:11:12 as **
  • Asymmetric leaf development and blade expansion in Arabidopsis are mediated by KANADI and YABBY activities
    Development, Vol. 131, No. 12. (15 June 2004), pp. 2997-3006.
    by Yuval Eshed, Anat Izhaki, Stuart F Baum, Sandra K Floyd, John L Bowman
    posted to regulon-paper by natstreet on 2007-10-27 22:36:58 as ** along with 1 person braingrind
  • Quantitative trait loci mapping of floral and leaf morphology traits in Arabidopsis thaliana: evidence for modular genetic architecture
    Evolution & Development, Vol. 7, No. 3. (May 2005), pp. 259-271.
    by Thomas Juenger, Jose M Perez-Perez, Salvador Bernal, Jose L Micol
    posted to regulon-paper by natstreet on 2007-10-24 15:05:06 as ** along with 1 person and 1 group ArtemPankin Khavkin's lab
  • Data integration in plant biology: the O2PLS method for combined modeling of transcript and metabolite data
    The Plant Journal, Vol. 0, No. 0. (0), pp. ???-???.
    by Max Bylesjo, Daniel Eriksson, Miyako Kusano, Thomas Moritz, Johan Trygg
    posted to regulon-paper by natstreet on 2007-10-29 16:21:37 as **
  • Genetical genomics analysis of a yeast segregant population for transcription network inference.
    Genetics, Vol. 170, No. 2. (June 2005), pp. 533-542.
    by N Bing, I Hoeschele
    posted to regulon-paper by natstreet on 2007-08-27 12:15:29 as ** along with 2 people and 1 group raiyar caseybrown steinmetzlab
  • Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight.
    PLoS Genet, Vol. 2, No. 8. (18 August 2006)
    by Anatole Ghazalpour, Sudheer Doss, Bin Zhang, Susanna Wang, Christopher Plaisier, Ruth Castellanos, Alec Brozell, Eric E E Schadt, Thomas A A Drake, Aldons J J Lusis, Steve Horvath
    posted to regulon-paper by natstreet on 2007-08-27 13:00:00 as ** along with 6 people and 1 group Maelys kengg koller giovanni jeremymiller jo_davies GeschwindLab
  • Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis
    Nature, Vol. 408, No. 6815. (21 December 2000), pp. 967-971.
    by Mary E Byrne, Ross Barley, Mark Curtis, Juana M Arroyo, Maitreya Dunham, Andrew Hudson, Robert A Martienssen
    posted to regulon-paper by natstreet on 2007-10-28 16:46:03 as **
  • PlnTFDB: An integrative plant transcription factor database
    BMC Bioinformatics, Vol. 8 (07 February 2007), 42.
    by Diego M Riano-Pachon, Slobodan Ruzicic, Ingo Dreyer, Bernd Mueller-Roeber
    posted to popgenie-ms regulon-paper by natstreet on 2007-10-29 18:16:22 as **
  • Transcript profiles of the cytokinin response regulator gene family in Populus imply diverse roles in plant development.
    New Phytol (18 October 2007)
    by Gustavo A A Ramírez-Carvajal, Alison M M Morse, John M M Davis
    posted to regulon-paper by natstreet on 2007-10-22 10:25:46 as **
  • Arabidopsis D-type cyclin CYCD4;1 is a novel cyclin partner of B2-type cyclin-dependent kinase.
    Plant Physiol, Vol. 132, No. 3. (July 2003), pp. 1315-1321.
    by A Kono, C Umeda-Hara, J Lee, M Ito, H Uchimiya, M Umeda
    posted to regulon-paper by natstreet on 2007-10-29 17:23:18 as ** along with 1 person helenc
  • Identification of QTLs controlling gene expression networks defined a priori
    BMC Bioinformatics, Vol. 7 (16 June 2006), 308.
    by Daniel J Kliebenstein, Marilyn AL West, Hans van Leeuwen, Olivier Loudet, RW Doerge, Dina
    posted to o3-paper regulon-paper by natstreet on 2007-08-20 11:03:50 as ** along with 2 people ccots caseybrown
  • BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3448-3449.
    by S Maere, K Heymans, M Kuiper
    posted to o3-paper regulon-paper by natstreet on 2007-10-29 16:25:34 as ** along with 1 person frohike
  • The cotyledon: A superior system for studies of leaf development
    Planta, Vol. 195, No. 2. (1 December 1994), pp. 309-312.
    by Hirokazu Tsukaya, Tomohiko Tsuge, Hirofumi Uchimiya
    posted to regulon-paper by natstreet on 2007-10-29 15:33:45 as **
  • Hierarchical Organization of Modularity in Metabolic Networks
    Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555.
    by E Ravasz, AL Somera, DA Mongru, ZN Oltvai, AL Barabasi
    posted to regulon-paper by natstreet on 2007-10-29 16:24:48 as ** along with 14 people and 9 groups shivaram alexg yish wnpx ddahlem neveaire bigbossman griota jeremymiller karfunkel Evangelia stefanoallesina ellakat iris_2001 Biostatistics Computational-Genomics Bioinformatics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab
  • A general framework for weighted gene co-expression network analysis.
    Stat Appl Genet Mol Biol, Vol. 4, No. 1. (2005)
    by B Zhang, S Horvath
    posted to regulon-paper by natstreet on 2007-10-29 15:55:34 as ** along with 3 people and 1 group kengg jeremymiller jo_davies GeschwindLab
  • The epidermis both drives and restricts plant shoot growth
    Nature, Vol. 446, No. 7132., pp. 199-202.
    by Sigal Savaldi-Goldstein, Charles Peto, Joanne Chory
    posted to regulon-paper by natstreet on 2007-10-23 13:18:21 as ** along with 1 person braingrind
  • DPTF: a database of poplar transcription factors
    Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1307-1308.
    by Qi-Hui Zhu, An-Yuan Guo, Ge Gao, Ying-Fu Zhong, Meng Xu, Minren Huang, Jinchu Luo
    posted to regulon-paper by natstreet on 2007-10-29 18:20:50 as **
  • Understanding Network Concepts in Modules
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Jun Dong, Steve Horvath
    posted to regulon-paper by natstreet on 2007-10-29 15:56:29 as ** along with 4 people and 1 group jfr kengg grahamc kaihsyn Bioinformatics
  • CUC1 gene activates the expression of SAM-related genes to induce adventitious shoot formation.
    Plant J, Vol. 36, No. 5. (December 2003), pp. 687-696.
    by K Hibara, S Takada, M Tasaka
    posted to regulon-paper by natstreet on 2007-10-29 08:23:50 as **
  • Structure and function of photosystems I and II.
    Annu Rev Plant Biol, Vol. 57 (2006), pp. 521-565.
    by N Nelson, CF Yocum
    posted to regulon-paper by natstreet on 2007-10-29 17:34:32 as **
  • A transcriptional roadmap to wood formation
    Proceedings of the National Academy of Sciences, Vol. 98, No. 25. (27 November 2001), pp. 14732-14737.
    by Magnus Hertzberg, Henrik Aspeborg, Jarmo Schrader, Anders Andersson, Rikard Erlandsson, Kristina Blomqvist, Rupali Bhalerao, Mathias Uhlen, Tuula T Teeri, Joakim Lundeberg, Bjorn Sundberg, Peter Nilsson, Goran Sandberg
    posted to popgenie-ms regulon-paper src-paper by natstreet on 2007-08-03 15:09:43 as **
  • The Role of PHANTASTICA in Leaf Development
    Plant Cell, Vol. 16, No. 5. (1 May 2004), pp. 1073-1075.
    by Nancy A Eckardt
    posted to regulon-paper by natstreet on 2007-10-28 15:54:07 as ** along with 1 person braingrind
  • Genetic Analysis of Natural Variations in the Architecture of Arabidopsis thaliana Vegetative Leaves
    Genetics, Vol. 162, No. 2. (1 October 2002), pp. 893-915.
    by Jose M Perez-Perez, Jose Serrano-Cartagena, Jose L Micol
    posted to regulon-paper by natstreet on 2007-10-23 11:13:34 as **
  • Gene network interconnectedness and the generalized topological overlap measure
    BMC Bioinformatics, Vol. 8 (24 January 2007), 22.
    by Andy M Yip, Steve Horvath
    posted to regulon-paper by natstreet on 2007-10-29 15:57:35 as ** along with 2 people jfr iris_2001
  • OPLS discriminant analysis: combining the strengths of PLS-DA and SIMCA classification
    Journal of Chemometrics, Vol. 20, No. 8-10. (2006), pp. 341-351.
    by Max Bylesjö, Mattias Rantalainen, Olivier Cloarec, Jeremy K Nicholson, Elaine Holmes, Johan Trygg
    posted to popgenie-ms regulon-paper by natstreet on 2007-10-29 16:22:50 as **
  • Global eQTL Mapping Reveals the Complex Genetic Architecture of Transcript-Level Variation in Arabidopsis
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1441-1450.
    by Marilyn A West, Kyunga Kim, Daniel J Kliebenstein, Hans van Leeuwen, Richard W Michelmore, RW Doerge, Dina A St. Clair
    posted to e-qtl regulon-paper by natstreet on 2007-08-17 09:57:57 as ** along with 4 people and 1 group dpollard caseybrown jmjimenez orzenil EisenLab
  • FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains
    Genes Dev., Vol. 13, No. 9. (1 May 1999), pp. 1079-1088.
    by Shinichiro Sawa, Keiro Watanabe, Koji Goto, Eiko Kanaya, Eugene H Morita, Kiyotaka Okada
    posted to regulon-paper by natstreet on 2007-10-27 22:42:18 as **
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to regulon-paper by natstreet on 2007-10-29 16:26:21 as ** along with 37 people and 7 groups verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
  • Natural phenological variation in aspen ( Populus tremula ): the SwAsp collection
    Tree Genetics & Genomes (2007)
    by Virginia Luquez, David Hall, Benedicte Albrectsen, Jan Karlsson, Pär Ingvarsson, Stefan Jansson
    posted to lamina regulon-paper by natstreet on 2007-08-24 16:10:25 as ** along with 1 person kathrynmrobinson
  • How to infer gene networks from expression profiles
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo
    posted to regulon-paper by natstreet on 2007-10-29 16:05:21 as ** along with 15 people and 2 groups gabe_rosser cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 heliopais mariakmejia tmmurali EBI-regulation Plantandetc
  • ERECTA is required for protection against heat-stress in the AS1/ AS2 pathway to regulate adaxial-abaxial leaf polarity in Arabidopsis.
    Planta, Vol. 219, No. 2. (June 2004), pp. 270-276.
    by Y Qi, Y Sun, L Xu, Y Xu, H Huang
    posted to regulon-paper by natstreet on 2007-10-29 08:26:42 as **
  • Self-organized formation of topologically correct feature maps
    Biological Cybernetics, Vol. 43, No. 1. (1 January 1982), pp. 59-69.
    by Teuvo Kohonen
    posted to regulon-paper by natstreet on 2007-10-29 15:49:04 as ** along with 1 person softsimu
  • The YABBY gene family and abaxial cell fate
    Current Opinion in Plant Biology, Vol. 3, No. 1. (1 February 2000), pp. 17-22.
    by John L Bowman
    posted to regulon-paper by natstreet on 2007-10-27 22:10:14 as **
  • Members of the YABBY gene family specify abaxial cell fate in Arabidopsis
    Development, Vol. 126, No. 18. (15 September 1999), pp. 4117-4128.
    by Kr Siegfried, Y Eshed, Sf Baum, D Otsuga, Gn Drews, Jl Bowman
    posted to regulon-paper by natstreet on 2007-10-27 22:18:30 as **
  • Gene network analysis in plant development by genomic technologies.
    Int J Dev Biol, Vol. 49, No. 5-6. (2005), pp. 745-759.
    by F Wellmer, JL Riechmann
    posted to regulon-paper by natstreet on 2007-10-29 16:00:57 as **
  • Characterization of genes with tissue-specific differential expression patterns in Populus
    Tree Genetics & Genomes, Vol. 3, No. 4. (26 October 2007), pp. 351-362.
    by Bo Segerman, Stefan Jansson, Jan Karlsson
    posted to popgenie-ms regulon-paper by natstreet on 2007-10-29 18:14:10 as **
  • Reverse engineering cellular networks.
    Nat Protoc, Vol. 1, No. 2. (2006), pp. 662-671.
    by AA Margolin, K Wang, WK Lim, M Kustagi, I Nemenman, A Califano
    posted to regulon-paper by natstreet on 2007-10-29 16:03:18 as ** along with 3 people and 1 group jyuh jfr cdawson GIG
  • Orthogonal projections to latent structures (O-PLS)
    Journal of Chemometrics, Vol. 16, No. 3. (2002), pp. 119-128.
    by Johan Trygg, Svante Wold
    posted to regulon-paper by natstreet on 2007-10-29 16:56:57 as **
  • UPSC-BASE Populus transcriptomics online
    The Plant Journal, Vol. 48, No. 5. (December 2006), pp. 806-817.
    by Sjodin, Andreas, Bylesjo, Max, Skogstrom, Oskar, Eriksson, Daniel, Nilsson, Peter, Ryden, Patrik, Jansson, Stefan, Karlsson, Jan
    posted to popgenie-ms regulon-paper by natstreet on 2007-10-29 16:12:07 as ** along with 1 person druvus
  • Ectopic expression of TaYAB1, a member of YABBY gene family in wheat, causes the partial abaxialization of the adaxial epidermises of leaves and arrests the development of shoot apical meristem in Arabidopsis
    Plant Science, Vol. 170, No. 2. (February 2006), pp. 364-371.
    by Wei Zhao, Hong Y Su, Jian Song, Xiang Y Zhao, Xian S Zhang
    posted to regulon-paper by natstreet on 2007-10-27 22:08:23 as **
  • QTL analysis of leaf morphology in tetraploid Gossypium (cotton)
    TAG Theoretical and Applied Genetics, Vol. 100, No. 3. (7 February 2000), pp. 409-418.
    by C Jiang, RJ Wright, SS Woo, TA Delmonte, AH Paterson
    posted to regulon-paper by natstreet on 2007-10-29 15:25:53 as **
  • Quantitative Trait Locus Analysis of Growth-Related Traits in a New Arabidopsis Recombinant Inbred Population
    Plant Physiol., Vol. 135, No. 1. (1 May 2004), pp. 444-458.
    by Mohamed E El-Lithy, Emile J Clerkx, Gerda J Ruys, Maarten Koornneef, Dick Vreugdenhil
    posted to regulon-paper by natstreet on 2007-10-23 11:20:26 as **
  • Conservation and molecular dissection of ROUGH SHEATH2 and ASYMMETRIC LEAVES1 function in leaf development
    PNAS, Vol. 100, No. 11. (27 May 2003), pp. 6837-6842.
    by George Theodoris, Noriko Inada, Michael Freeling
    posted to regulon-paper by natstreet on 2007-10-29 08:32:06 as ** along with 1 person braingrind
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