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Ключевое слово rotamers [22 articles]

Recent papers classified by the tag rotamers.
  • Side chain placement using estimation of distribution algorithms
    Artificial Intelligence in Medicine, Vol. 39, No. 1. (January 2007), pp. 49-63.
    by Roberto Santana, Pedro Larranaga, Jose A Lozano
    posted to sidechains rotamers protein optimization edas bioinformatics by rsantana on 2006-12-21 15:19:01 as read along with 2 people mijam carlk
  • Bayesian statistical analysis of protein side-chain rotamer preferences.
    Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681.
    by RL Dunbrack, FE Cohen
    posted to sidechains rotamers protein bayesian by rsantana on 2007-02-09 19:49:45 as read along with 12 people and 1 group karbak nknii j3xucite dgront blackbart kazemi hmk LamBras mijam jwm phoenixzxl zwang TCR_Signaling
  • Rotamer libraries in the 21st century.
    Curr Opin Struct Biol, Vol. 12, No. 4. (August 2002), pp. 431-440.
    by RL Dunbrack
    posted to sidechains rotamers protein bayesian by rsantana on 2007-02-09 19:49:01 as read along with 8 people and 1 group yongzhao dgront blackbart kazemi medic0747 LamBras mijam jwm TSRI_MGL
  • Exact rotamer optimization for protein design.
    J Comput Chem, Vol. 24, No. 2. (30 January 2003), pp. 232-243.
    by DB Gordon, GK Hom, SL Mayo, NA Pierce
    posted to protein-design rotamers by rsantana on 2007-02-09 19:39:44 as ** along with 1 person bluvsh1
  • Improved modeling of side-chains in proteins with rotamer-based methods: A flexible rotamer model
    Proteins: Structure, Function, and Genetics, Vol. 37, No. 4. (1999), pp. 530-543.
    by Joaquim Mendes, António M Baptista, Maria A Carrondo, Cláudio M Soares
    posted to protein rotamers sidechains by rsantana on 2007-02-09 19:41:44 as ** along with 1 person apaydin
  • A graph-theory algorithm for rapid protein side-chain prediction.
    Protein Sci, Vol. 12, No. 9. (September 2003), pp. 2001-2014.
    by AA Canutescu, AA Shelenkov, RL Dunbrack
    posted to sidechains rotamers protein bayesian by rsantana on 2007-02-09 19:49:22 as read along with 9 people karbak nigham bicko blackbart bluvsh1 mijam jwm carlk newton1234
  • Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains.
    Nat Struct Biol, Vol. 1, No. 5. (May 1994), pp. 334-340.
    by RL Dunbrack, M Karplus
    posted to protein rotamers sidechains by rsantana on 2007-10-26 23:41:38 as ***** along with 3 people and 1 group nknii kazemi jwm TCR_Signaling
  • Side-chain flexibility in protein-ligand binding: the minimal rotation hypothesis.
    Protein Sci, Vol. 14, No. 4. (April 2005), pp. 1104-1114.
    by MI Zavodszky, LA Kuhn
    posted to protein rotamers sidechains by rsantana on 2007-09-27 18:52:24 as ** along with 8 people and 2 groups ramensky BragilMassoud dgruiz yongzhao nknii blackbart kazemi LamBras TCR_Signaling TSRI_MGL
  • Docking and scoring with alternative side-chain conformations
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Christoph Hartmann, Iris Antes, Thomas Lengauer
    posted to docking rotamers by middledomain on 2008-08-17 12:47:37 as ** along with 2 people zimbo1 reyez
  • Residue-rotamer-reduction algorithm for the protein side-chain conformation problem
    Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 188-194.
    by Wei Xie, Nikolaos V Sahinidis
    posted to ab-initio biophysics protein_structure rotamers by marcius on 2006-02-02 05:47:25 as ** along with 3 people and 2 groups bicko bluvsh1 carlk BioinfoCIPF SGU-CIPF
  • RNA backbone is rotameric.
    Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 13904-13909.
    by LJ Murray, WB Arendall, DC Richardson, JS Richardson
    posted to rna rotamers statistics structure by marcius on 2005-12-22 20:29:47 as ** along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
  • A complete conformational map for RNA.
    J Mol Biol, Vol. 291, No. 2. (13 August 1999), pp. 313-327.
    by VL Murthy, R Srinivasan, DE Draper, GD Rose
    posted to biophysics classification rna rotamers structure by marcius on 2005-12-28 11:35:09 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • RNA conformational classes.
    Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677.
    by B Schneider, Z Morávek, HM Berman
    posted to biophysics classification rna rotamers by marcius on 2007-06-12 12:55:21 as ** along with 1 person and 2 groups emidio_capriotti BioinfoCIPF SGU-CIPF
  • The penultimate rotamer library
    Proteins, Vol. 40, No. 3. (15 August 2000), pp. 389-408.
    by SC Lovell, JM Word, JS Richardson, DC Richardson
    posted to rotamers by LamBras on 2008-02-24 19:53:14 as ** along with 2 people and 5 groups barry joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
  • Rotamer Libraries in the 21st Century
    Current Opinion in Structural Biology, Vol. 12, No. 4. (01 August 2002), pp. 431-440.
    by Jr Dunbrack
    posted to rotamers by LamBras on 2008-02-24 19:53:24 as ** along with 3 people and 5 groups apaydin barry joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
  • Sequence comparison and protein structure prediction.
    Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 374-384.
    by RL Dunbrack
    posted to rotamers by jwm on 2008-06-01 16:57:43 as ** along with 5 people agustinarce wouterboomsma xiaobeizhao rabio schuylrp
  • Backbone-dependent Rotamer Library for Proteins Application to Side-chain Prediction
    Journal of Molecular Biology, Vol. 230, No. 2. (20 March 1993), pp. 543-574.
    by Jr Dunbrack, Martin Karplus
    posted to rotamers by jwm on 2008-06-01 17:04:13 as ** along with 2 people and 1 group nknii dgront TCR_Signaling
  • Statistical and conformational analysis of the electron density of protein side chains.
    Proteins, Vol. 66, No. 2. (1 February 2007), pp. 279-303.
    by MV Shapovalov, RL Dunbrack
    posted to rotamers by jwm on 2008-06-01 16:57:34 as **
  • Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool.
    J Mol Biol, Vol. 267, No. 5. (18 April 1997), pp. 1268-1282.
    by MJ Bower, FE Cohen, RL Dunbrack
    posted to rotamers by jwm on 2008-06-01 16:58:24 as ** along with 5 people and 1 group kaarsinogen nknii blackbart mijam carlk TCR_Signaling
  • The dead-end elimination theorem and its use in protein side-chain positioning
    Nature, Vol. 356, No. 6369. (April 1992), pp. 539-542.
    by Johan Desmet, , Marc D Maeyer, Bart Hazes, Ignace Lasters
    posted to dee rotamers by dgront on 2006-04-07 14:33:40 as read along with 2 people bluvsh1 mijam
  • The penultimate rotamer library
    Proteins: Structure, Function, and Genetics, Vol. 40, No. 3. (2000), pp. 389-408.
    by Simon C Lovell, Michael J Word, Jane S Richardson, David C Richardson
    posted to atom_reconstruction rotamers by dgront on 2008-01-17 19:35:29 as read along with 2 people kazemi mijam
  • A new approach to the rapid determination of protein side chain conformations.
    J Biomol Struct Dyn, Vol. 8, No. 6. (June 1991), pp. 1267-1289.
    by P Tuffery, C Etchebest, S Hazout, R Lavery
    posted to comparative_modeling rotamers by dgront on 2006-05-24 14:22:14 as ** along with 1 person carlk
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