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Ключевое слово sites [62 articles]

Recent papers classified by the tag sites.
  • InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale
    Genome Biology, Vol. 8 (14 September 2007), R192.
    by Haidong Wang, Eran Segal, Asa Ben-Hur, Qianru Li, Marc Vidal, Daphne Koller
    posted to binding interaction prediction protein sites by zwang on 2008-08-22 09:47:16 as **** along with 2 people cjeans carlk
  • Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA.
    Nat Immunol, Vol. 5, No. 8. (August 2004), pp. 768-774.
    by J Nardone, DU Lee, KM Ansel, A Rao
    posted to regulatory sites transcription by ziquje on 2005-05-16 16:47:24 as ***** along with 3 people moborg kianpeng Jporci
  • Systematic Identification of mRNAs Recruited to Argonaute 2 by Specific microRNAs and Corresponding Changes in Transcript Abundance.
    PLoS ONE, Vol. 3, No. 5. (2008)
    by DG Hendrickson, DJ Hogan, D Herschlag, JE Ferrell, PO Brown
    posted to another are at cds experimental identification mirna paper reported sites target by yuwang on 2008-05-08 20:10:58 as ** along with 3 people jfr bootsy maralena
  • Identification of hot spots within druggable binding regions by computational solvent mapping of proteins.
    J Med Chem, Vol. 50, No. 6. (22 March 2007), pp. 1231-1240.
    by MR Landon, DR Lancia, J Yu, SC Thiel, S Vajda
    posted to binding druggable sites by willpitt on 2008-02-28 10:16:17 as ***** along with 1 person tjimenez
  • Structure-based maximal affinity model predicts small-molecule druggability
    Nature Biotechnology, Vol. 25, No. 1. (08 January 2007), pp. 71-75.
    by Alan C Cheng, Ryan G Coleman, Kathleen T Smyth, Qing Cao, Patricia Soulard, Daniel R Caffrey, Anna C Salzberg, Enoch S Huang
    posted to binding druggable sites by willpitt on 2008-02-28 10:19:09 as read along with 4 people ucbcjbm jerome yeastyboy higueruelo
  • A simple and fuzzy method to align and compare druggable ligand-binding sites
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Claire Schalon, Jean-Sébastien Surgand, Esther Kellenberger, Didier Rognan
    posted to binding druggable sites by willpitt on 2008-02-28 10:03:39 as ** along with 3 people tjimenez bicko nickolay
  • Achieving Usability Within E-Government Web Sites Illustrated by a Case Study Evaluation
    Human Interface and the Management of Information. Interacting in Information Environments (2007), pp. 777-784.
    by Basil Soufi, Martin Maguire
    posted to - e-government evaluation heuristic sites web by UTMarieke on 2008-03-17 15:16:07 as *** along with 1 person LexUT
  • A familiar face(book): profile elements as signals in an online social network
    (2007), pp. 435-444.
    by Cliff AC Lampe, Nicole Ellison, Charles Steinfield
    posted to elements network profile signaling sites social theory by trdillah on 2007-12-29 04:35:07 as read along with 2 people dmeister fmccown
  • The SuMo server: 3D search for protein functional sites
    Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3929-3930.
    by Martin Jambon, Olivier Andrieu, Christophe Combet, Gilbert Deleage, Francois Delfaud, Christophe Geourjon
    posted to proteins sites sumo by topsan on 2006-12-04 23:34:33 as read
  • Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software
    Nature Methods, Vol. 3, No. 7. (21 June 2006), pp. 533-539.
    by Patrick GA Pedrioli, Brian Raught, Xiang-Dong Zhang, Richard Rogers, John Aitchison, Michael Matunis, Ruedi Aebersold
    posted to and mass pattern recognition sites software spectrometry summon sumoylation using by tmpu9774 on 2007-01-02 01:09:03 as ***
  • Method for comparing the structures of protein ligand-binding sites and application for predicting protein-drug interactions
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Ryoichi Minai, Yo Matsuo, Hiroyuki Onuki, Hiroshi Hirota
    posted to binding comparison sites by tjimenez on 2008-04-17 10:14:36 as ** along with 6 people ramensky chad_davis massivemayhem jteyra mingzhi higueruelo
  • A model for statistical significance of local similarities in structure.
    J Mol Biol, Vol. 326, No. 5. (7 March 2003), pp. 1307-1316.
    by A Stark, S Sunyaev, RB Russell
    posted to sites by thamelry on 2006-03-02 15:29:30 as ***** along with 8 people and 2 groups karbak ana nigham chad_davis nickolay robert scis0000001 siebertm structural_bioinformatics Bioinformatics
  • Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation.
    Nature, Vol. 289, No. 5796. (29 January 1981), pp. 373-378.
    by DC Wiley, IA Wilson, JJ Skehel
    posted to antigenic influenza sites structure virus by skumagai on 2008-06-06 18:09:36 as read
  • Prediction of functional sites by analysis of sequence and structure conservation.
    Protein Sci, Vol. 13, No. 4. (April 2004), pp. 884-892.
    by AR Panchenko, F Kondrashov, S Bryant
    posted to bioinformatics functional interaction interactions prediction sites by skhadar on 2007-08-17 07:49:55 as ** along with 4 people chrn sriram_s tanuja_rastogi Jporci
  • The extended environment of mononuclear metal centers in protein structures.
    Proc Natl Acad Sci U S A, Vol. 94, No. 26. (23 December 1997), pp. 14225-14230.
    by S Karlin, ZY Zhu, KD Karlin
    posted to binding environment metal protein sites structures by siebertm on 2007-05-15 13:32:58 as **
  • Analysis of catalytic residues in enzyme active sites.
    J Mol Biol, Vol. 324, No. 1. (15 November 2002), pp. 105-121.
    by GJ Bartlett, CT Porter, N Borkakoti, JM Thornton
    posted to active analysis catalytic enzyme residues sites by siebertm on 2007-05-14 10:55:17 as ** along with 4 people baaden gbart nickolay sriram_s
  • The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by CT Porter, GJ Bartlett, JM Thornton
    posted to active catalytic database enzyme residues sites by siebertm on 2007-05-12 15:10:02 as read along with 8 people and 2 groups baaden chrn jwm gbart tny sriram_s massivemayhem grottenolm Radiation_Damage Stressosome
  • Understanding nature's catalytic toolkit.
    Trends Biochem Sci (5 October 2005)
    by A Gutteridge, JM Thornton
    posted to active catalytic enzyme residues sites toolkit units by siebertm on 2007-05-15 13:31:22 as ** along with 10 people and 4 groups ana jwm Einat alexg gbart eweaver tny noby grottenolm sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
  • The design of transcription-factor binding sites is affected by combinatorial regulation.
    Genome Biol, Vol. 6, No. 12. (2005)
    by Y Bilu, N Barkai
    posted to binding cooperativity factor factors grammar regulation site sites transcription yeast by samal on 2006-08-22 06:39:12 as ** along with 7 people and 1 group chrn dpollard tabu adepace lewbin nklee xili03 EisenLab
  • A searchable database for comparing protein-ligand binding sites for the analysis of structure-function relationships.
    J Chem Inf Model, Vol. 46, No. 2. (r 2006), pp. 736-742.
    by ND Gold, RM Jackson
    posted to binding geometric hashing pdb sites by reyez on 2008-07-16 09:29:52 as ** along with 3 people and 1 group caporaso blackbart massivemayhem biomedical-nlp
  • MSDmotif: exploring protein sites and motifs
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Adel Golovin, Kim Henrick
    posted to binding pockets protein sites by reyez on 2008-07-21 10:09:49 as ** along with 3 people massivemayhem chad_davis Evangelia
  • Antagonistic Effects of the SRp30c Protein and Cryptic 5 ' Splice Sites on the Alternative Splicing of the Apoptotic Regulator Bcl-x
    J. Biol. Chem., Vol. 283, No. 31. (1 August 2008), pp. 21315-21324.
    by Philippe Cloutier, Johanne Toutant, Lulzim Shkreta, Serge Goekjian, Timothee Revil, Benoit Chabot
    posted to alternate bclxl sites splice by paulschlesinger on 2008-08-05 01:45:15 as **
  • A Systematic Methodology for Defining Coarse-grained Sites in Large Biomolecules
    Biophys. J. (29 August 2008), biophysj.108.139626.
    by Zhiyong Zhang, Lanyuan Lu, Will G Noid, Vinod Krishna, Jim Pfaendtner, Gregory A Voth
    posted to zhang08pdf systematic sites simulation large grain coarse biomolecules by paulschlesinger on 2008-09-02 00:26:41 as **
  • The impact of multiple splice sites in human L1 elements
    Gene, Vol. 411, No. 1-2. (31 March 2008), pp. 38-45.
    by VP Belancio, AM Roy-Engel, P Deininger
    posted to human l1 sites splice by paulcartwright on 2008-03-03 17:29:39 as read along with 1 person and 1 group dchughes BergmanLab
  • Impact of RNA structure on the prediction of donor and acceptor splice sites
    BMC Bioinformatics, Vol. 7 (13 June 2006), 297.
    by Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi
    posted to rna sites splice structure by papamicd on 2006-06-28 17:39:10 as ** along with 1 person raylim
  • Evolutionary predictions of binding surfaces and interactions
    Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 21-27.
    by Olivier Lichtarge, Mathew E Sowa
    posted to evolution evolutionary functional interactions protein-protein sites trace by Pao-Yang on 2008-02-04 16:35:53 as *** along with 1 person cjeans
  • Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset.
    Nucleic Acids Res (14 February 2008)
    by Jie Guo, Xiaomei Wu, Da-Yong Y Zhang, Kui Lin
    posted to interaction negative ppi sites yeast by paolomarcatili on 2008-05-20 18:51:35 as ** along with 4 people tmmurali neils kluck stef_lise
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart D De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James J Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques v van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
    posted to benchmarking binding discovery sites by nklee on 2007-09-26 23:39:45 as read along with 26 people and 6 groups emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to binding evolution sites by nklee on 2008-03-14 01:23:16 as ** along with 8 people and 1 group xili03 aalibes chad_davis sebastien_vigneau lusk Garamonfok maximilianh emptyhb BioinfoCIPF
  • SCPD: a promoter database of the yeast Saccharomyces cerevisiae.
    Bioinformatics, Vol. 15, No. 7-8. (g 1999), pp. 607-611.
    by J Zhu, MQ Zhang
    posted to binding db factor sites transcription by njcitulike on 2007-11-24 16:03:35 as ***** along with 4 people chad_davis xiaobeizhao lusk nklee
  • PiSite: a database of protein interaction sites using multiple binding states in the PDB
    Nucl. Acids Res. (4 October 2008), gkn659.
    by Miho Higurashi, Takashi Ishida, Kengo Kinoshita
    posted to sites protein-protein pdb interaction database binding by neils on 2008-10-05 10:09:38 as **
  • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641.
    by JC Obenauer, LC Cantley, MB Yaffe
    posted to analysis article-nar article-predikin binding internet motifs phosphorylation protein proteome sequence signal sites software structure transduction amino-acid database algorithm by neils on 2008-04-24 16:16:06 as ** along with 2 people mloewer Evangelia
  • Explicating Web Site Interactivity: Impression Formation Effects in Political Campaign Sites
    Communication Research, Vol. 30, No. 1. (1 February 2003), pp. 30-59.
    by Shyam S Sundar, Sriram Kalyanaraman, Justin Brown
    posted to interaction interactivity sites web by misskowalski on 2007-08-02 22:25:56 as ** along with 1 person and 1 group josepe tendenciaspoliticas
  • Diversification and specialization of HIV protease function during in vitro evolution.
    Mol Biol Evol, Vol. 23, No. 4. (April 2006), pp. 764-772.
    by TL O'Loughlin, DN Greene, I Matsumura
    posted to binding hiv sites by matzke on 2007-04-02 02:34:45 as ****
  • Domains, Motifs, and Scaffolds: The Role of Modular Interactions in the Evolution and Wiring of Cell Signaling Circuits.
    Annu Rev Biochem (17 March 2006)
    by Roby P P Bhattacharyya, Attila Reményi, Brian J J Yeh, Wendell A A Lim
    posted to binding evo ic protein sites by matzke on 2007-06-04 22:54:15 as ** along with 9 people laurabailey rklancer imouthesmp choonpeng koller cjeans melting carlk gulkur
  • Ranked prediction of p53 targets using hidden variable dynamic modeling
    Genome Biology, Vol. 7, No. 3. (2006)
    by Martino Barenco, Daniela Tomescu, Daniel Brewer, Robin Callard, Jaroslav Stark, Michael Hubank
    posted to binding p53 predictions sites by johncumbers on 2007-05-13 18:22:02 as **
  • JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by A Sandelin, W Alkema, P Engström, WW Wasserman, B Lenhard
    posted to binding pssm sites transcription by jguinney on 2006-09-04 17:47:14 as *** along with 4 people and 2 groups aalibes indigoviolet nklee heliopais EisenLab Motif Discovery
  • Statistical significance for genomewide studies.
    Proc Natl Acad Sci U S A, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445.
    by JD Storey, R Tibshirani
    posted to algorithms alternative analysis animals array binding exons expression gene genetic genetics genome humans linkage oligonucleotide regulation sam sequence sites splicing statistics techniques transcription by incovoma on 2007-07-13 11:10:40 as ** along with 20 people and 1 group egreenfest jyuh textoris RMGraze jen_drake hggr frohike schuylrp grahamc kynn sancho 7ofAnn nicholso shikin wirawan BrianTomasik roys sconlan zhouyu bpcusack Bioinformatics
  • Kinetic properties of the 2-oxoglutarate dehydrogenase complex from Azotobacter vinelandii evidence for the formation of a precatalytic complex with 2-oxoglutarate.
    Eur J Biochem, Vol. 267, No. 12. (June 2000), pp. 3583-3591.
    by V Bunik, AH Westphal, A de Kok
    posted to acids acyltransferases azotobacter binding complex dehydrogenase dihydrolipoamide flavins ketoglutarate ketoglutaric kinetics magnesium oxaloacetate pyrophosphate sites thiamine vinelandii by incovoma on 2007-07-23 16:31:45 as **
  • GenBank.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by DA Benson, I Karsch-Mizrachi, DJ Lipman, J Ostell, DL Wheeler
    posted to acid animals base complementary databases dna expressed genomics humans interface internet library medicine national nucleic of sequence sites states tagged tags united us user-computer by incovoma on 2007-07-29 20:29:22 as ** along with 1 person dullhunk
  • A novel spectral tuning in the short wavelength-sensitive (SWS1 and SWS2) pigments of bluefin killifish (Lucania goodei).
    Gene, Vol. 396, No. 1. (1 July 2007), pp. 196-202.
    by S Yokoyama, N Takenaka, N Blow
    posted to critical sites sws1 sws2 tuning by breden to the group guppyopsinnih on 2008-06-02 07:48:13 as **
  • Practical Semantic Analysis of Web Sites and Documents
    (11 Oct 2005)
    by Thierry Despeyroux
    posted to analysis practical semantic sites web by A_Olympia to the group Blog_and_Wiki_Research on 2005-10-12 15:03:45 as ** along with 1 group Philosophy_of_Information
  • Structural stability of binding sites: consequences for binding affinity and allosteric effects.
    Proteins, Vol. Suppl 4 (2000), pp. 63-71.
    by I Luque, E Freire
    posted to sites binding by fpiazza on 2007-01-14 10:51:00 as ** along with 1 person lna
  • Low nucleosome occupancy is encoded around functional human transcription factor binding sites
    BMC Genomics, Vol. 9 (15 July 2008), 332.
    by Floris Daenen, Frans van Roy, Pieter J De Bleser
    posted to binding factor nucleosome sites transcription by fpattyn on 2008-07-16 09:04:14 as **
  • ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation
    Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 637-640.
    by SB Montgomery, OL Griffith, CM Bergman, M Bilenky, ED Pleasance, Y Prychyna, X Zhang, SJM Jones
    posted to binding database factor promoter sites transcription by fpattyn on 2007-12-21 21:05:11 as ** along with 2 people and 3 groups yas cisevol T_lab cis-regulatory-evolution BergmanLab
  • MagPIe: MPI's collective communication operations for clustered wide area systems
    (1999), pp. 131-140.
    by Thilo Kielmann, Rutger FH Hofman, Henri E Bal, Aske Plaat, Raoul AF Bhoedjang
    posted to grid across computing mpi multiple sites by elsantosneto on 2006-12-18 12:20:36 as read
  • Failure Resilient Heterogeneous Parallel Computing Across Multidomain Clusters
    Int. J. High Perform. Comput. Appl., Vol. 19, No. 2. (May 2005), pp. 143-155.
    by Dawid Kurzyniec, Vaidy Sunderam
    posted to across computing execution grid multiple parallel sites by elsantosneto on 2006-12-18 13:36:24 as *****
  • A grid-enabled MPI: message passing in heterogeneous distributed computing systems
    (1998), pp. 1-11.
    by Ian Foster, Nicholas T Karonis
    posted to across computing grid mpi multiple sites by elsantosneto on 2006-12-18 12:20:03 as read
  • ATR-mediated checkpoint pathways regulate phosphorylation and activation of human Chk1.
    Mol Cell Biol, Vol. 21, No. 13. (July 2001), pp. 4129-4139.
    by H Zhao, H Piwnica-Worms
    posted to atr phosphorylation sites by ecattell on 2007-08-25 18:21:33 as ** along with 1 person DNAReplication
  • A familiar face(book): profile elements as signals in an online social network
    (2007), pp. 435-444.
    by Cliff AC Lampe, Nicole Ellison, Charles Steinfield
    posted to theory social sites signaling profile networking interface hci facebook elements design by dtd on 2008-09-04 13:18:59 as *** along with 13 people and 5 groups kizzie jacksonfox vanderwal dingx abl misskowalski zinasahib tyttivir fbr eviil rupachile yteng2 tnhh UX research updates Semantic-Social-Networks SocialMedia FaceBook research PROFCOM
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