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Ключевое слово structure [960 articles]

Recent papers classified by the tag structure.
  • Prediction of the structure of symmetrical protein assemblies
    Proceedings of the National Academy of Sciences (31 October 2007), 0702626104.
    by Ingemar Andre, Philip Bradley, Chu Wang, David Baker
    posted to prediction protein structure by zwang on 2007-11-07 07:44:46 as * along with 4 people and 2 groups jwm jmrivort cjeans sobolevnrm Supramolecular baker-group
  • SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e149.
    by Irmtraud M Meyer, István Miklós
    posted to alignment bayesian phylogeny rna structure by zwang on 2007-09-13 17:47:28 as **** along with 3 people bertelsen raylim cabbagezs
  • Using multiple templates to improve quality of homology models in automated homology modeling
    Protein Sci, Vol. 17, No. 6. (1 June 2008), pp. 990-1002.
    by Per Larsson, Bjorn Wallner, Erik Lindahl, Arne Elofsson
    posted to structure homologymodeling by zwang on 2008-07-01 08:51:22 as **
  • Computational studies of the structure, dynamics and native content of amyloid-like fibrils of ribonuclease A
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Giorgio Colombo, Massimiliano Meli, Alfonso De Simone
    posted to dynamics protein structure by zwang on 2007-10-12 07:36:37 as ** along with 2 people fullofgrace88 RamuAnandakrishnan
  • Crystal Structure of Unliganded Influenza B Virus Hemagglutinin
    J. Virol., Vol. 82, No. 6. (15 March 2008), pp. 3011-3020.
    by Qinghua Wang, Feng Cheng, Mingyang Lu, Xia Tian, Jianpeng Ma
    posted to influenza structure virus by zwang on 2008-02-26 06:16:03 as ***
  • Using structural analysis to generate parasite-selective monoclonal antibodies
    Protein Sci (14 April 2008), ps.073429808.
    by Michael A Kron, Sam Cichanowicz, Angela Hendrick, Aizhuo Liu, Joseph Leykam, Leslie A Kuhn
    posted to antibody immunity structure by zwang on 2008-04-15 02:16:08 as **
  • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    Nature, Vol. 452, No. 7183., pp. 51-55.
    by Marc Parisien, François Major
    posted to prediction rna sequence structure by zwang on 2008-03-07 02:48:26 as *** along with 3 people reyez austin elfar
  • The long coming of computational structural biology
    Journal of Structural Biology, Vol. In Press, Accepted Manuscript
    by Andrei N Lupas
    posted to computational structure by zwang on 2008-03-20 13:25:51 as ** along with 1 person and 1 group psique psique blog references
  • Correlated substitution analysis and the prediction of amino acid structural contacts
    Brief Bioinform (13 November 2007), bbm052.
    by David S Horner, Walter Pirovano, Graziano Pesole
    posted to co-evolution contact prediction structure substitution by zwang on 2008-03-20 13:25:08 as *** along with 2 people and 3 groups barry sobolevnrm structural_bioinformatics Bioinformatics baker-group
  • Structural inference of native and partially folded RNA by high-throughput contact mapping
    Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4144-4149.
    by Rhiju Das, Madhuri Kudaravalli, Magdalena Jonikas, Alain Laederach, Robert Fong, Jason P Schwans, David Baker, Joseph A Piccirilli, Russ B Altman, Daniel Herschlag
    posted to contact folding rna structure by zwang on 2008-03-20 13:00:39 as ***** along with 1 person and 1 group wsjames Oxford Virology
  • Quantifying the Impact of Protein Tertiary Structure on Molecular Evolution
    Mol Biol Evol (23 May 2007), msm097.
    by Sang C Choi, Asger Hobolth, Douglas M Robinson, Hirohisa Kishino, Jeffrey L Thorne
    posted to evolution protein structure by zwang on 2007-08-09 02:54:20 as ** along with 1 person penka
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to interaction prediction protein sequence structure by zwang on 2007-11-02 08:05:43 as *** along with 3 people bicko chad_davis dquest
  • Computational design of antibody-affinity improvement beyond in vivo maturation.
    Nat Biotechnol (23 September 2007)
    by Shaun M M Lippow, K Dane D Wittrup, Bruce Tidor
    posted to design interaction invivo structure by zwang on 2007-10-11 16:58:25 as *** along with 1 person and 1 group hmk group
  • 3D structure of the influenza virus polymerase complex: Localization of subunit domains
    Proceedings of the National Academy of Sciences, Vol. 101, No. 1. (6 January 2004), pp. 308-313.
    by Estela Area, Jaime Martin-Benito, Pablo Gastaminza, Eva Torreira, Jose M Valpuesta, Jose L Carrascosa, Juan Ortin
    posted to structure influenza complex by zwang on 2008-05-09 02:38:39 as **
  • Protein-Protein Interactions in the Membrane: Sequence, Structural, and Biological Motifs
    Structure, Vol. 16, No. 7. (9 July 2008), pp. 991-1001.
    by David T Moore, Bryan W Berger, William F Degrado
    posted to structure protein interaction by zwang on 2008-07-14 02:46:16 as ** along with 2 people jonsta247 neils
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to structure review protein network interaction by zwang on 2008-07-16 04:11:11 as **** along with 5 people phoenixzxl paolomarcatili grahamc neils Evangelia
  • Modeling of protein binary complexes using structural mass spectrometry data
    Protein Sci, Vol. 17, No. 1. (1 January 2008), pp. 79-94.
    by Amisha JK Kamal, Mark R Chance
    posted to complex massspectrometry protein structure by zwang on 2007-12-22 03:02:36 as ****
  • Synthetic antibodies for specific recognition and crystallization of structured RNA
    Proceedings of the National Academy of Sciences, Vol. 105, No. 1. (8 January 2008), pp. 82-87.
    by Jing-Dong Ye, Valentina Tereshko, John K Frederiksen, Akiko Koide, Frederic A Fellouse, Sachdev S Sidhu, Shohei Koide, Anthony A Kossiakoff, Joseph A Piccirilli
    posted to antibody protein rna structure by zwang on 2008-01-10 14:30:57 as ***
  • Molecular Engineering of Viral Gene Delivery Vehicles
    Annual Review of Biomedical Engineering, Vol. 10, No. 1. (2008), pp. 169-194.
    by David V Schaffer, James T Koerber, Kwang I Lim
    posted to virus structure gene by zwang on 2008-07-23 07:11:52 as **
  • In Search of the Biological Significance of Modular Structures in Protein Networks
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e107.
    by Zhi Wang, Jianzhi Zhang
    posted to network protein structure by zwang on 2007-08-18 15:17:14 as *** along with 6 people and 2 groups pinney jfr grahamc massivemayhem cjeans cabbagezs Bioinformatics ParkinsonLab_at_MaRS
  • Bottleneck Genes and Community Structure in the Cell Cycle Network of S. pombe
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e103.
    by Cécile Caretta-Cartozo, De Los, Francesco Piazza, Pietro Liò
    posted to cellcycle network structure yeast by zwang on 2007-08-18 15:14:38 as * along with 6 people Borelli jfr sandersl rahulthadani toshiaki_katayama sianbeya
  • Structure-based activity prediction for an enzyme of unknown function
    Nature (01 July 2007)
    by Johannes C Hermann, Ricardo Marti-Arbona, Alexander A Fedorov, Elena Fedorov, Steven C Almo, Brian K Shoichet, Frank M Raushel
    posted to function prediction protein structure by zwang on 2007-08-18 08:45:55 as *** along with 6 people aheilbut tjimenez daevans pkolb kimicc ivke
  • Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis
    Science (16 August 2007), 1142819.
    by Eric A Ortlund, Jamie T Bridgham, Matthew R Redinbo, Joseph W Thornton
    posted to co-evolution epistasis evolution mutation protein structure by zwang on 2007-08-18 08:37:30 as *** along with 4 people and 1 group bicko dpollard csjonline ramensky EisenLab
  • A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation
    Proceedings of the National Academy of Sciences (28 December 2007), 0707684105.
    by Michal Brylinski, Jeffrey Skolnick
    posted to annotation binding prediction site structure threading by zwang on 2008-01-10 01:30:18 as ** along with 1 person cjeans
  • A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis
    Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15711-15716.
    by Amit Ghosh, Saraswathi Vishveshwara
    posted to network protein rna simulation structure by zwang on 2007-11-01 07:34:35 as ** along with 3 people and 1 group phoenixzxl cactus sobolevnrm baker-group
  • Evaluating and Learning from RNA Pseudotorsional Space: Quantitative Validation of a Reduced Representation for RNA Structure
    Journal of Molecular Biology, Vol. 372, No. 4. (28 September 2007), pp. 942-957.
    by Leven M Wadley, Kevin S Keating, Carlos M Duarte, Anna M Pyle
    posted to prediction rna structure by zwang on 2007-11-01 07:34:03 as ** along with 1 person reyez
  • Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes
    Nucl. Acids Res., Vol. 35, No. 7. (1 April 2007), pp. 2283-2294.
    by Yanglong Zhu, Dileep K Pulukkunat, Yong Li
    posted to diversity phylogeny rna structure by zwang on 2007-05-08 12:14:37 as ***
  • Accuracy of structure-based sequence alignments of automatic methods
    BMC Bioinformatics, Vol. 8 (20 September 2007), 355.
    by Changhoon Kim, Byungkook Lee
    posted to accuracy algorithm alignment sequence structure by zwang on 2007-11-01 07:29:02 as *** along with 3 people rabio dimka chad_davis
  • Predicting protein function from sequence and structure
    Nat Rev Mol Cell Biol, Vol. 8, No. 12. (December 2007), pp. 995-1005.
    by David Lee, Oliver Redfern, Christine Orengo
    posted to function prediction protein review sequence structure by zwang on 2007-12-08 08:55:16 as *** along with 8 people kluck skhadar neils cjeans Evangelia hpaces Ema renatomilani
  • The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239.
    by Del, Pablo Carbonell
    posted to binding domain protein structure by zwang on 2007-12-08 08:54:46 as ** along with 9 people carlk bicko chad_davis choonpeng grahamc cjeans niallhaslam biehl marti
  • Structure-based design of a pathway-specific nuclear import inhibitor
    Nature Structural & Molecular Biology, Vol. 14, No. 5. (15 April 2007), pp. 452-454.
    by Ahmet E Cansizoglu, Brittany J Lee, Zi C Zhang, Beatriz MA Fontoura, Yuh M Chook
    posted to design nuclear pathway structure by zwang on 2007-05-08 11:53:58 as **
  • The role of disorder in interaction networks: a structural analysis
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Philip M Kim, Andrea Sboner, Yu Xia, Mark Gerstein
    posted to interaction network structure by zwang on 2008-03-27 05:09:26 as ** along with 5 people chad_davis bootsy biomcgary maralena phoenixzxl
  • 3D models of yeast RNase P/MRP proteins Rpp1p and Pop3p
    RNA, Vol. 11, No. 2. (1 February 2005), pp. 123-127.
    by Mensur Dlakic
    posted to prediction protein rnasep structure subunit yeast by zwang on 2007-07-26 15:46:54 as ****
  • Structural motifs of biomolecules
    Proceedings of the National Academy of Sciences, Vol. 104, No. 44. (30 October 2007), pp. 17283-17286.
    by Jayanth R Banavar, Trinh X Hoang, John H Maddocks, Amos Maritan, Chiara Poletto, Andrzej Stasiak, Antonio Trovato
    posted to motif structure by zwang on 2007-11-01 02:15:29 as ** along with 3 people and 1 group sobolevnrm afenley hpaces baker-group
  • Structural insights into the interaction of the evolutionarily conserved ZPR1 domain tandem with eukaryotic EF1A, receptors, and SMN complexes
    Proceedings of the National Academy of Sciences, Vol. 104, No. 35. (28 August 2007), pp. 13930-13935.
    by Ashwini K Mishra, Laxman Gangwani, Roger J Davis, David G Lambright
    posted to complex domain eukaryota evolution interaction structure by zwang on 2007-11-01 02:01:47 as ***
  • Multiple Routes and Structural Heterogeneity in Protein Folding
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 489-510.
    by Jayant B Udgaonkar
    posted to structure protein folding by zwang on 2008-05-08 09:59:05 as **
  • Automated de novo prediction of native-like RNA tertiary structures
    PNAS (28 August 2007), 0703836104.
    by Rhiju Das, David Baker
    posted to prediction rna structure by zwang on 2007-08-31 16:23:25 as **** along with 6 people and 2 groups reyez jwm marcius eckart_bindewald physics Ema BioinfoCIPF SGU-CIPF
  • Structural Principles from Large RNAs
    Annual Review of Biophysics, Vol. 37, No. 1. (2008)
    by Stephen R Holbrook
    posted to structure secondary rna by zwang on 2008-05-08 09:57:07 as *****
  • Structure of Eukaryotic RNA Polymerases
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 337-352.
    by P Cramer, KJ Armache, S Baumli, S Benkert, F Brueckner, C Buchen, GE Damsma, S Dengl, SR Geiger, AJ Jasiak, A Jawhari, S Jennebach, T Kamenski, H Kettenberger, CD Kuhn, E Lehmann, K Leike, JF Sydow, A Vannini
    posted to structure rna eukaryota by zwang on 2008-05-08 09:54:27 as **
  • PKA Type IIalpha Holoenzyme Reveals a Combinatorial Strategy for Isoform Diversity
    Science, Vol. 318, No. 5848. (12 October 2007), pp. 274-279.
    by Jian Wu, Simon H Brown, Sventja von Daake, Susan S Taylor
    posted to diversity structure by zwang on 2007-10-22 13:25:05 as *
  • Riboswitches: Emerging Themes in RNA Structure and Function
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 117-133.
    by Rebecca K Montange, Robert T Batey
    posted to structure rna by zwang on 2008-05-08 09:48:18 as ****
  • A generative, probabilistic model of local protein structure
    Proceedings of the National Academy of Sciences, Vol. 105, No. 26. (1 July 2008), pp. 8932-8937.
    by Wouter Boomsma, Kanti V Mardia, Charles C Taylor, Jesper Ferkinghoff-Borg, Anders Krogh, Thomas Hamelryck
    posted to structure protein modeling by zwang on 2008-07-02 11:49:14 as * along with 3 people mijam apaydin biehl
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to alignment clustering rna structure by zwang on 2007-05-01 06:10:22 as ** along with 7 people and 2 groups marcius eckart_bindewald eweaver ppgardne ilh dunnp zhouyu BioinfoCIPF SGU-CIPF
  • A Dominant Conformational Role for Amino Acid Diversity in Minimalist Protein-Protein Interfaces
    Journal of Molecular Biology, Vol. 381, No. 2. (29 August 2008), pp. 407-418.
    by Ryan N Gilbreth, Kaori Esaki, Akiko Koide, Sachdev S Sidhu, Shohei Koide
    posted to structure protein interface interaction by zwang on 2008-07-18 04:02:00 as ** along with 2 people mapplab phoenixzxl
  • High-resolution structure prediction and the crystallographic phase problem
    Nature (14 October 2007)
    by Bin Qian, Srivatsan Raman, Rhiju Das, Philip Bradley, Airlie J Mccoy, Randy J Read, David Baker
    posted to prediction structure by zwang on 2007-11-13 17:07:38 as *** along with 15 people and 2 groups ardalby apaydin aheilbut jwm chad_davis eckart_bindewald ffranca dgront massivemayhem cjeans cactus sobolevnrm boris_aguilar Ema chenway OPIG baker-group
  • Quaternary Structure Constraints on Evolutionary Sequence Divergence
    Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 349-351.
    by Fornasari, Maria Silvina, Parisi, Gustavo, Echave, Julian
    posted to divergence evolution structure by zwang on 2007-04-12 13:19:48 as ** along with 1 person Garamonfok
  • Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
    BMC Bioinformatics, Vol. 8 (19 April 2007), 130.
    by Arif O Harmanci, Gaurav Sharma, David H Mathews
    posted to prediction rna structure by zwang on 2007-05-29 12:26:56 as **
  • Kinetic evidence for a ligand-binding-induced conformational transition in the T cell receptor
    Proceedings of the National Academy of Sciences, Vol. 104, No. 42. (16 October 2007), pp. 16639-16644.
    by Dmitry M Gakamsky, Erwin Lewitzki, Ernst Grell, Xavier Saulquin, Bernard Malissen, Felix Montero-Julian, Marc Bonneville, Israel Pecht
    posted to binding protein purification structure by zwang on 2007-10-22 05:49:11 as *
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to interaction prediction protein sequence structure by zwang on 2007-10-22 05:11:20 as **** along with 2 people winterschlaefer cjeans
  • Dissecting protein structure and function using directed evolution
    Nat Meth, Vol. 4, No. 12. (December 2007), pp. 995-997.
    by Courtney M Yuen, David R Liu
    posted to evolution function protein structure by zwang on 2007-12-10 05:04:21 as *** along with 1 person cjeans
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