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Ключевое слово tez [75 articles]

Recent papers classified by the tag tez.
  • Genome-wide map of nucleosome acetylation and methylation in yeast.
    Cell, Vol. 122, No. 4. (26 August 2005), pp. 517-527.
    by DK Pokholok, CT Harbison, S Levine, M Cole, NM Hannett, TI Lee, GW Bell, K Walker, PA Rolfe, E Herbolsheimer, J Zeitlinger, F Lewitter, DK Gifford, RA Young
  • A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
    Cell, Vol. 125, No. 2. (21 April 2006), pp. 315-326.
    by BE Bernstein, TS Mikkelsen, X Xie, M Kamal, DJ Huebert, J Cuff, B Fry, A Meissner, M Wernig, K Plath, R Jaenisch, A Wagschal, R Feil, SL Schreiber, ES Lander
    posted to chromatin histone tez by olympos on 2007-11-05 03:03:12 as ** along with 2 people tuck jasonflannick
  • The multitasking genome
    Nature Genetics, Vol. 38, No. 6., pp. 608-609.
    by Thomas R Gingeras
    posted to tez transcriptome by olympos on 2007-11-05 02:02:07 as ** along with 2 people bioyang antonkratz
  • Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59.
    by Outi Hallikas, Kimmo Palin, Natalia Sinjushina, Reetta Rautiainen, Juha Partanen, Esko Ukkonen, Jussi Taipale
  • ProbCons: Probabilistic consistency-based multiple sequence alignment.
    Genome Res, Vol. 15, No. 2. (February 2005), pp. 330-340.
  • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
    Nat Genet (4 February 2007)
    by Nathaniel D D Heintzman, Rhona K K Stuart, Gary Hon, Yutao Fu, Christina W W Ching, R David D Hawkins, Leah O O Barrera, Sara Van Calcar, Chunxu Qu, Keith A A Ching, Wei Wang, Zhiping Weng, Roland D D Green, Gregory E E Crawford, Bing Ren
  • Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
    Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15776-15781.
  • Histone H3 lysine 4 methylation patterns in higher eukaryotic genes
    Nat Cell Biol, Vol. 6, No. 1. (January 2004), pp. 73-77.
    by Robert Schneider, Andrew J Bannister, Fiona A Myers, Alan W Thorne, Colyn Crane-Robinson, Tony Kouzarides
    posted to tez by olympos on 2007-11-11 18:36:31 as **
  • Histone acetyltransferases: function, structure, and catalysis.
    Curr Opin Genet Dev, Vol. 11, No. 2. (April 2001), pp. 155-161.
    by R Marmorstein, SY Roth
    posted to acetylation tez by olympos on 2007-11-10 19:16:23 as **
  • A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing.
    Genome Res (24 May 2007)
    by Rodger B B Voelker, J Andrew A Berglund
  • R: A Language for Data Analysis and Graphics
    Journal of Computational and Graphical Statistics, Vol. 5, No. 3. (1996), pp. 299-314.
    by Ross Ihaka, Robert Gentleman
    posted to tez by olympos on 2007-11-12 16:30:29 as ** along with 3 people dgruiz incovoma xingxu
  • A high-resolution map of active promoters in the human genome
    Nature (29 June 2005)
    by Tae H Kim, Leah O Barrera, Ming Zheng, Chunxu Qu, Michael A Singer, Todd A Richmond, Yingnian Wu, Roland D Green, Bing Ren
  • Methylation of histone H3 Lys 4 in coding regions of active genes
    Proceedings of the National Academy of Sciences, Vol. 99, No. 13. (25 June 2002), pp. 8695-8700.
    by Bradley E Bernstein, Emily L Humphrey, Rachel L Erlich, Robert Schneider, Peter Bouman, Jun S Liu, Tony Kouzarides, Stuart L Schreiber
    posted to tez by olympos on 2007-11-11 18:34:39 as **
  • Evidence for nucleosome depletion at active regulatory regions genome-wide.
    Nat Genet, Vol. 36, No. 8. (August 2004), pp. 900-905.
    by CK Lee, Y Shibata, B Rao, BD Strahl, JD Lieb
    posted to faire tez by olympos on 2007-11-18 21:18:36 as ** along with 1 person nucleosome
  • Predicting essential genes in fungal genomes
    Genome Res., Vol. 16, No. 9. (1 September 2006), pp. 1126-1135.
    by Michael Seringhaus, Alberto Paccanaro, Anthony Borneman, Michael Snyder, Mark Gerstein
    posted to bayesian tez by olympos on 2007-11-06 18:24:46 as ** along with 4 people GustavoLacerda dbenn saket balicea
  • Integrated Pseudogene Annotation for Human Chromosome 22: Evidence for Transcription
    Journal of Molecular Biology, Vol. 349, No. 1. (27 May 2005), pp. 27-45.
    by Deyou Zheng, Zhaolei Zhang, Paul M Harrison, John Karro, Nick Carriero, Mark Gerstein
    posted to pseudogene tez by olympos on 2007-11-18 20:44:04 as **
  • Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 839-851.
    by D Zheng, A Frankish, R Baertsch, P Kapranov, A Reymond, SW Choo, Y Lu, F Denoeud, SE Antonarakis, M Snyder, Y Ruan, CL Wei, TR Gingeras, R Guigó, J Harrow, MB Gerstein
  • The UCSC genome browser database: update 2007.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by RM Kuhn, D Karolchik, AS Zweig, H Trumbower, DJ Thomas, A Thakkapallayil, CW Sugnet, M Stanke, KE Smith, A Siepel, KR Rosenbloom, B Rhead, BJ Raney, A Pohl, JS Pedersen, F Hsu, AS Hinrichs, RA Harte, M Diekhans, H Clawson, G Bejerano, GP Barber, R Baertsch, D Haussler, WJ Kent
    posted to tez by olympos on 2007-11-05 02:41:26 as ** along with 2 people miguel balajis
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    by E Encode
  • The role of chromatin during transcription.
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 707-719.
    by B Li, M Carey, JL Workman
  • Interrogating the transcriptome.
    Trends Biotechnol, Vol. 22, No. 1. (January 2004), pp. 23-30.
    by Y Ruan, P Le Ber, HH Ng, ET Liu
    posted to tez transcriptome by olympos on 2007-11-05 02:16:20 as **
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
  • Role of covalent modifications of histones in regulating gene expression
    Gene, Vol. 240, No. 1. (15 November 1999), pp. 1-12.
    by Virginia A Spencer, James R Davie
    posted to tez by olympos on 2007-11-10 17:21:29 as **
  • Origin of a substantial fraction of human regulatory sequences from transposable elements
    Trends in Genetics, Vol. 19, No. 2. (February 2003), pp. 68-72.
    by King I Jordan, Igor B Rogozin, Galina V Glazko, Eugene V Koonin
    posted to tez transposable_element by olympos on 2007-11-18 20:47:30 as **
  • The sequence of the human genome.
    Science, Vol. 291, No. 5507. (16 February 2001), pp. 1304-1351.
    by JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, M Yandell, CA Evans, RA Holt, JD Gocayne, P Amanatides, RM Ballew, DH Huson, JR Wortman, Q Zhang, CD Kodira, XH Zheng, L Chen, M Skupski, G Subramanian, PD Thomas, J Zhang, Gabor GL Miklos, C Nelson, S Broder, AG Clark, J Nadeau, VA Mckusick, N Zinder, AJ Levine, RJ Roberts, M Simon, C Slayman, M Hunkapiller, R Bolanos, A Delcher, I Dew, D Fasulo, M Flanigan, L Florea, A Halpern, S Hannenhalli, S Kravitz, S Levy, C Mobarry, K Reinert, K Remington, J Abu-Threideh, E Beasley, K Biddick, V Bonazzi, R Brandon, M Cargill, I Chandramouliswaran, R Charlab, K Chaturvedi, Z Deng, V Di Francesco, P Dunn, K Eilbeck, C Evangelista, AE Gabrielian, W Gan, W Ge, F Gong, Z Gu, P Guan, TJ Heiman, ME Higgins, RR Ji, Z Ke, KA Ketchum, Z Lai, Y Lei, Z Li, J Li, Y Liang, X Lin, F Lu, GV Merkulov, N Milshina, HM Moore, AK Naik, VA Narayan, B Neelam, D Nusskern, DB Rusch, S Salzberg, W Shao, B Shue, J Sun, Z Wang, A Wang, X Wang, J Wang, M Wei, R Wides, C Xiao, C Yan, A Yao, J Ye, M Zhan, W Zhang, H Zhang, Q Zhao, L Zheng, F Zhong, W Zhong, S Zhu, S Zhao, D Gilbert, S Baumhueter, G Spier, C Carter, A Cravchik, T Woodage, F Ali, H An, A Awe, D Baldwin, H Baden, M Barnstead, I Barrow, K Beeson, D Busam, A Carver, A Center, ML Cheng, L Curry, S Danaher, L Davenport, R Desilets, S Dietz, K Dodson, L Doup, S Ferriera, N Garg, A Gluecksmann, B Hart, J Haynes, C Haynes, C Heiner, S Hladun, D Hostin, J Houck, T Howland, C Ibegwam, J Johnson, F Kalush, L Kline, S Koduru, A Love, F Mann, D May, S Mccawley, T Mcintosh, I Mcmullen, M Moy, L Moy, B Murphy, K Nelson, C Pfannkoch, E Pratts, V Puri, H Qureshi, M Reardon, R Rodriguez, YH Rogers, D Romblad, B Ruhfel, R Scott, C Sitter, M Smallwood, E Stewart, R Strong, E Suh, R Thomas, NN Tint, S Tse, C Vech, G Wang, J Wetter, S Williams, M Williams, S Windsor, E Winn-Deen, K Wolfe, J Zaveri, K Zaveri, JF Abril, R Guigó, MJ Campbell, KV Sjolander, B Karlak, A Kejariwal, H Mi, B Lazareva, T Hatton, A Narechania, K Diemer, A Muruganujan, N Guo, S Sato, V Bafna, S Istrail, R Lippert, R Schwartz, B Walenz, S Yooseph, D Allen, A Basu, J Baxendale, L Blick, M Caminha, J Carnes-Stine, P Caulk, YH Chiang, M Coyne, C Dahlke, A Mays, M Dombroski, M Donnelly, D Ely, S Esparham, C Fosler, H Gire, S Glanowski, K Glasser, A Glodek, M Gorokhov, K Graham, B Gropman, M Harris, J Heil, S Henderson, J Hoover, D Jennings, C Jordan, J Jordan, J Kasha, L Kagan, C Kraft, A Levitsky, M Lewis, X Liu, J Lopez, D Ma, W Majoros, J Mcdaniel, S Murphy, M Newman, T Nguyen, N Nguyen, M Nodell, S Pan, J Peck, M Peterson, W Rowe, R Sanders, J Scott, M Simpson, T Smith, A Sprague, T Stockwell, R Turner, E Venter, M Wang, M Wen, D Wu, M Wu, A Xia, A Zandieh, X Zhu
  • Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 720-731.
    by Nathan D Trinklein, Ulas Karaoz, Jiaqian Wu, Anason Halees, Force, Patrick J Collins, Deyou Zheng, Zhengdong D Zhang, Mark B Gerstein, Michael Snyder, Richard M Myers, Zhiping Weng
    posted to tez by olympos on 2007-11-26 22:28:32 as ** along with 5 people jyuh djkt cjeans Garamonfok jasonflannick
  • The UCSC Table Browser data retrieval tool.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by D Karolchik, AS Hinrichs, TS Furey, KM Roskin, CW Sugnet, D Haussler, WJ Kent
    posted to tez by olympos on 2007-11-18 20:42:56 as ** along with 2 people miguel heliopais
  • 5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation.
    Proc Natl Acad Sci U S A, Vol. 101, No. 32. (10 August 2004), pp. 11701-11706.
    by CL Wei, P Ng, KP Chiu, CH Wong, CC Ang, L Lipovich, ET Liu, Y Ruan
    posted to tez transcriptome by olympos on 2007-11-05 02:21:09 as **
  • Regulation of Transcription by a Protein Methyltransferase
    Science, Vol. 284, No. 5423. (25 June 1999), pp. 2174-2177.
    by Dagang Chen, Han Ma, Heng Hong, Stephen S Koh, Shih-Ming Huang, Brandon T Schurter, Dana W Aswad, Michael R Stallcup
    posted to tez by olympos on 2007-11-11 18:16:00 as ** along with 1 person mapplab
  • Active genes are tri-methylated at K4 of histone H3
    Nature, Vol. 419, No. 6905. (2002), pp. 407-411.
    by Helena Santos-Rosa, Robert Schneider, Andrew J Bannister, Julia Sherriff, Bradley E Bernstein, Tolga NC Emre, Stuart L Schreiber, Jane Mellor, Tony Kouzarides
    posted to tez by olympos on 2007-11-11 18:35:14 as **
  • The landscape of histone modifications across 1% of the human genome in five human cell lines
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 691-707.
    by Christoph M Koch, Robert M Andrews, Paul Flicek, Shane C Dillon, Ulas Karaoz, Gayle K Clelland, Sarah Wilcox, David M Beare, Joanna C Fowler, Phillippe Couttet, Keith D James, Gregory C Lefebvre, Alexander W Bruce, Oliver M Dovey, Peter D Ellis, Pawandeep Dhami, Cordelia F Langford, Zhiping Weng, Ewan Birney, Nigel P Carter, David Vetrie, Ian Dunham
  • Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
    Nature Methods, Vol. 3, No. 7. (21 June 2006), pp. 511-518.
    by Peter J Sabo, Michael S Kuehn, Robert Thurman, Brett E Johnson, Ericka M Johnson, Hua Cao, Man Yu, Elizabeth Rosenzweig, Jeff Goldy, Andrew Haydock, Molly Weaver, Anthony Shafer, Kristin Lee, Fidencio Neri, Richard Humbert, Michael A Singer, Todd A Richmond, Michael O Dorschner, Michael Mcarthur, Michael Hawrylycz, Roland D Green, Patrick A Navas, William S Noble, John A Stamatoyannopoulos
    posted to dhs tez by olympos on 2007-11-18 20:46:29 as ** along with 1 person tuck
  • Role of covalent modifications of histones in regulating gene expression.
    Gene, Vol. 240, No. 1. (15 November 1999), pp. 1-12.
    by VA Spencer, JR Davie
    posted to histone tez by olympos on 2007-11-05 02:28:54 as **
  • Volume changes in protein evolution
    Journal of Molecular Biology, Vol. 236, No. 4. (4 March 1994), pp. 1067-1078.
    by Mark Gerstein, Erik L Sonnhammer, Cyrus Chothia
    posted to tez by olympos on 2007-11-05 17:35:45 as **
  • Analysis of genome-wide histone acetylation state and enzyme binding using DNA microarrays.
    Methods Enzymol, Vol. 376 (2004), pp. 289-304.
    posted to acetylation histone tez by olympos on 2007-11-10 22:39:04 as **
  • GENCODE: producing a reference annotation for ENCODE
    Genome Biology, Vol. 7, No. Suppl 1. (2006)
    by Jennifer Harrow, France Denoeud, Adam Frankish, Alexandre Reymond, Chao K Chen, Jacqueline Chrast, Julien Lagarde, James Gilbert, Roy Storey, David Swarbreck, Colette Rossier, Catherine Ucla, Tim Hubbard, Stylianos Antonarakis, Roderic Guigo
    posted to tez by olympos on 2007-11-18 20:47:51 as ** along with 1 person wenhan
  • Targeted Recruitment of Set1 Histone Methylase by Elongating Pol II Provides a Localized Mark and Memory of Recent Transcriptional Activity
    Molecular Cell, Vol. 11, No. 3. (March 2003), pp. 709-719.
    by Huck H Ng, Francois Robert, Richard A Young, Kevin Struhl
    posted to tez by olympos on 2007-11-11 18:35:57 as **
  • Fewer Genes, More Noncoding RNA
    Science, Vol. 309, No. 5740. (02 September 2005), pp. 1529-1530.
    by Jean-Michel Claverie
  • Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction.
    Nucleic Acids Res, Vol. 34, No. 20. (2006), pp. 5943-5950.
    by U Ohler
    posted to promoter tez by olympos on 2007-11-05 03:07:41 as ** along with 1 person debasis
  • Large-scale identification of novel transcripts in the human genome.
    Genome Res (31 January 2007)
    by Brock A A Peters, Brad St Croix, Tobias Sjöblom, Jordan M M Cummins, Natalie Silliman, Janine Ptak, Saurabh Saha, Kenneth W W Kinzler, Christos Hatzis, Victor E E Velculescu
  • Yeast histone H4 N-terminal sequence is required for promoter activation in vivo.
    Cell, Vol. 65, No. 6. (14 June 1991), pp. 1023-1031.
    by LK Durrin, RK Mann, PS Kayne, M Grunstein
    posted to tez by olympos on 2007-11-10 21:14:07 as **
  • Role of Histone H3 Lysine 27 Methylation in Polycomb-Group Silencing
    Science, Vol. 298, No. 5595. (1 November 2002), pp. 1039-1043.
    by Ru Cao, Liangjun Wang, Hengbin Wang, Li Xia, Hediye Erdjument-Bromage, Paul Tempst, Richard S Jones, Yi Zhang
    posted to histone tez by olympos on 2007-11-11 00:25:15 as **
  • Histone methylation in transcriptional control
    Current Opinion in Genetics & Development, Vol. 12, No. 2. (1 April 2002), pp. 198-209.
    by Tony Kouzarides
    posted to methylation tez by olympos on 2007-11-12 21:48:35 as **
  • Pseudogenes: are they "junk" or functional DNA?
    Annu Rev Genet, Vol. 37 (2003), pp. 123-151.
    by ES Balakirev, FJ Ayala
    posted to pseudogene tez by olympos on 2007-11-18 20:45:02 as **
  • Translating the Histone Code
    Science, Vol. 293, No. 5532. (10 August 2001), pp. 1074-1080.
    by Thomas Jenuwein, David C Allis
    posted to tez by olympos on 2007-11-12 21:45:11 as ** along with 1 person johncumbers
  • Genome Network and FANTOM3: assessing the complexity of the transcriptome.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    posted to tez by olympos on 2007-11-03 16:36:37 as ** along with 1 person gjuggler
  • FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.
    Genome Res (19 December 2006)
    by Paul G G Giresi, Jonghwan Kim, Ryan M M McDaniell, Vishwanath R R Iyer, Jason D D Lieb
  • The occurrence of Epsilon-N-Methyl. lysine in histones.
    Biochemistry, Vol. 3 (January 1964), pp. 10-15.
    by K Murray
    posted to tez by olympos on 2007-11-10 21:50:43 as **
  • CAGE-TSSchip: promoter-based expression profiling using the 5-leading label of capped transcripts
    Genome Biology, Vol. 8 (26 March 2007), R42.
    by Shintaro Katayama, Mutsumi Kanamori-Katayama, Kazumi Yamaguchi, Piero Carninci, Yoshihide Hayashizaki
    posted to tez by olympos on 2007-11-03 16:31:41 as ** along with 1 person jyuh
  • Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcription and organismic complexity.
    Genome Res (12 June 2006)
    by Miao Sun, Laurence D D Hurst, Gordon G G Carmichael, Jianjun Chen
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