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AbnerCYH biology [62 articles]

Recent papers added to AbnerCYH library classified by the tag biology. You can also see everyone's biology.
  • Classes of complex networks defined by role-to-role connectivity profiles
    Nat Phys, Vol. 3, No. 1. (January 2007), pp. 63-69.
    by Roger Guimera, Marta Sales-Pardo, Luis A Amaral
    posted to graph complex biology by AbnerCYH on 2008-05-16 05:28:44 as ** along with 4 people and 1 group aalibes okarsligil jaspervoskuilen biehl Bioinformatics
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to graph complex biology by AbnerCYH on 2008-05-16 05:28:30 as ** along with 13 people and 3 groups hryk margaritis cactus dbikard Garamonfok caseybrown biehl aalibes tmmurali dullhunk neils cmzmasek josedavid SynBioSys Centre de Recherches Interdisciplinaires GEB
  • Complex networks: Lies, damned lies and statistics
    Nat Phys, Vol. 2, No. 2. (February 2006), pp. 75-76.
    by Nunes, Roger Guimera
    posted to stochastic kdd graph complex biology by AbnerCYH on 2008-05-14 06:50:56 as ** along with 2 people RobMills Evangelia
  • Complex networks: Role model for modules
    Nat Phys, Vol. 3, No. 1. (January 2007), pp. 18-19.
    by Sergei Maslov
    posted to graph complex biology by AbnerCYH on 2008-05-14 06:24:07 as read
  • Protein Structure from Contact Maps: A Case-Based Reasoning Approach
    Information Systems Frontiers, Vol. 8, No. 1. (February 2006), pp. 29-36.
    by Janice Glasgow, Tony Kuo, Jim Davies
    posted to kdd complex biology algorithms by AbnerCYH on 2008-05-09 13:15:47 as ** along with 1 person babakap
  • The use of receiver operating characteristic curves in biomedical informatics
    Journal of Biomedical Informatics, Vol. 38, No. 5. (October 2005), pp. 404-415.
    by Thomas A Lasko, Jui G Bhagwat, Kelly H Zou, Lucila Ohno-Machado
    posted to stochastic math kdd information complex biology by AbnerCYH on 2008-05-09 09:22:01 as ** along with 3 people and 1 group microserf yas vmoa T_lab
  • Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
    Research in Computational Molecular Biology (2007), pp. 16-31.
    by Rohit Singh, Jinbo Xu, Bonnie Berger
    posted to graph biology algorithms by AbnerCYH on 2008-05-08 19:53:01 as **
  • Protein side-chain packing problem: a maximum edge-weight clique algorithmic approach
    (2004), pp. 191-200.
    by Dukka KC Bahadur, Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki
    posted to graph biology algorithms by AbnerCYH on 2008-05-08 18:56:43 as **
  • Fast and accurate algorithms for protein side-chain packing
    J. ACM, Vol. 53, No. 4. (July 2006), pp. 533-557.
    by Jinbo Xu, Bonnie Berger
    posted to graph biology algorithms by AbnerCYH on 2008-05-08 18:56:38 as **
  • Recognizing the fold of a protein structure
    Bioinformatics, Vol. 19, No. 14. (22 September 2003), pp. 1748-1759.
    by Andrew Harrison, Frances Pearl, Ian Sillitoe, Tim Slidel, Richard Mott, Janet Thornton, Christine Orengo
    posted to graph complex biology algorithms by AbnerCYH on 2008-05-08 07:55:35 as **
  • Evolution of Eukaryotic Transcription Circuits
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1797-1799.
    by Brian B Tuch, Hao Li, Alexander D Johnson
    posted to biology complex graph by AbnerCYH on 2008-04-05 05:39:19 as ** along with 1 person djkt
  • Gene Regulation in the Third Dimension
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1793-1794.
    by Job Dekker
    posted to biology geometries by AbnerCYH on 2008-04-05 05:07:34 as ** along with 8 people and 1 group emptyhb operon ealloza biomcgary sunhwan dlobo lambda Haze GEB
  • The Eukaryotic Genome as an RNA Machine
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1787-1789.
    by Paulo P Amaral, Marcel E Dinger, Tim R Mercer, John S Mattick
    posted to biology by AbnerCYH on 2008-04-05 04:51:13 as ** along with 4 people and 1 group operon dullhunk biomcgary dlobo GEB
  • Closed-loop control of cellular functions using combinatory drugs guided by a stochastic search algorithm
    Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 5105-5110.
    by Pak K Wong, Fuqu Yu, Arash Shahangian, Genhong Cheng, Ren Sun, Chih-Ming Ho
    posted to algorithms biology complex stochastic by AbnerCYH on 2008-04-02 01:15:45 as **
  • From time series to complex networks: The visibility graph
    Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 4972-4975.
    by Lucas Lacasa, Bartolo Luque, Fernando Ballesteros, Jordi Luque, Juan C Nuno
    posted to biology complex graph by AbnerCYH on 2008-04-02 01:15:29 as ** along with 2 people vrich biehl
  • A Parameterized Algorithm for Protein Structure Alignment
    Journal of Computational Biology, Vol. 14, No. 5. (2007), pp. 564-577.
    by Jinbo Xu, Feng Jiao, Bonnie Berger
    posted to algorithms biology by AbnerCYH on 2008-03-27 16:06:25 as *****
  • QPath: a method for querying pathways in a protein-protein interaction network
    BMC Bioinformatics, Vol. 7 (2006), 199.
    by Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan
    posted to algorithms biology complex graph by AbnerCYH on 2008-03-24 14:07:13 as **
  • PathBLAST: a tool for alignment of protein interaction networks.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by BP Kelley, B Yuan, F Lewitter, R Sharan, BR Stockwell, T Ideker
    posted to algorithms biology complex graph by AbnerCYH on 2008-03-24 13:59:56 as ** along with 4 people sza dragonrez nuke2005 koller
  • Network biology: understanding the cell's functional organization
    Nature Reviews Genetics, Vol. 5 (February 2004), pp. 101-113.
    by Albert-László Barabási, Zoltán N Oltvai
    posted to biology complex graph by AbnerCYH on 2008-03-24 12:27:36 as read
  • Mapping the protein universe.
    Science, Vol. 273, No. 5275. (2 August 1996), pp. 595-603.
    by L Holm, C Sander
    posted to algorithms biology complex by AbnerCYH on 2008-03-23 07:20:24 as read along with 5 people and 2 groups sim82 ana barry dimka robert structural_bioinformatics Bioinformatics
  • Dali: a network tool for protein structure comparison
    Trends in Biochemical Sciences, Vol. 20, No. 11. (November 1995), pp. 478-480.
    by Liisa Holm, Chris Sander
    posted to biology complex graph by AbnerCYH on 2008-03-23 06:46:32 as **
  • Graph algorithms for biological systems analysis
    (2008), pp. 142-151.
    by Bonnie Berger, Rohit Singht, Jinbo Xu
    posted to algorithms biology graph kdd by AbnerCYH on 2008-03-19 08:13:52 as **
  • DNA motif representation with nucleotide dependency.
    IEEE/ACM Trans Comput Biol Bioinform, Vol. 5, No. 1. (r 2008), pp. 110-119.
    by F Chin, HC Leung
    posted to algorithms biology by AbnerCYH on 2008-02-20 11:30:39 as ** along with 3 people Stew maximilianh xili03
  • Scale-free network of a dengue epidemic
    Applied Mathematics and Computation, Vol. 195, No. 2. (1 February 2008), pp. 376-381.
    by Eduardo Massad, Stefen Ma, Mark Chen, Claudio J Struchiner, Nico Stollenwerk, Maira Aguiar
    posted to biology complex graph math by AbnerCYH on 2008-01-07 07:50:13 as **
  • Combinatorial Algorithms and Applications for Genome Rearrangements
    (2007)
    by Ying-Chih Lin
    posted to algorithms biology by AbnerCYH on 2008-01-03 07:25:16 as **
  • Biological impacts and context of network theory.
    J Exp Biol, Vol. 210, No. Pt 9. (1 May 2007), pp. 1548-1558.
    by E Almaas
    posted to biology complex graph by AbnerCYH on 2007-12-30 11:01:55 as ** along with 7 people and 4 groups jyuh cmmorel balicea jwdietrich jaspervoskuilen rsantana wayne7513 MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Computer algebra in systems biology
    (27 Dec 2007)
    by Reinhard Laubenbacher, Bernd Sturmfels
    posted to algebra algorithms biology complex complexity math by AbnerCYH on 2007-12-28 08:52:39 as **
  • A Unified Model of Codon Reassignment in Alternative Genetic Codes
    Genetics, Vol. 170, No. 2. (1 June 2005), pp. 831-840.
    by Supratim Sengupta, Paul G Higgs
    posted to biology by AbnerCYH on 2007-12-18 06:16:16 as ** along with 2 people balicea gwenknight
  • CLUSTAL: a package for performing multiple sequence alignment on a microcomputer
    Gene, Vol. 73, No. 1. (15 December 1988), pp. 237-244.
    by Desmond G Higgins, Paul M Sharp
    posted to algorithms biology by AbnerCYH on 2007-12-07 10:57:22 as ** along with 1 person moborg
  • Multiple sequence alignment using partial order graphs.
    Bioinformatics, Vol. 18, No. 3. (March 2002), pp. 452-464.
    by C Lee, C Grasso, MF Sharlow
    posted to algorithms biology order by AbnerCYH on 2007-12-07 08:37:32 as ** along with 5 people and 3 groups ana Cortel azazello wenhan gjuggler structural_bioinformatics Bioinformatics MBLAB
  • Molecular medicine: MicroRNAs and the tell-tale heart
    Nature, Vol. 447, No. 7143. (23 May 2007), pp. 389-390.
    by Kenneth R Chien
    posted to biology by AbnerCYH on 2007-11-26 13:38:07 as ** along with 1 person saru
  • The mutual information: Detecting and evaluating dependencies between variables
    Bioinformatics, Vol. 18 (2002), pp. S231-S240.
    by R Steuer, J Kurths, CO Daub, J Weise, J Selbig
    posted to biology information math stochastic testing by AbnerCYH on 2007-11-26 13:37:16 as **
  • Cancer Stem Cells as the Engine of Tumor Progression
    (June 2007)
    by Ricard V Solé, Carlos Rodriguez-Caso, Thomas S Deisboeck, Joan Saldanya
    posted to biology complex by AbnerCYH on 2007-11-26 13:32:59 as **
  • Informatics in neuroscience
    Brief Bioinform, Vol. 8, No. 6. (1 November 2007), pp. 446-456.
    by Leon French, Paul Pavlidis
    posted to biology complex graph neuro by AbnerCYH on 2007-11-26 13:26:15 as ** along with 1 person tmmurali
  • Transport optimization on complex networks
    Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 17, No. 2. (2007)
    by Bogdan Danila, Yong Yu, John A Marsh, Kevin E Bassler
    posted to algorithms biology complex graph by AbnerCYH on 2007-11-13 10:56:21 as ** along with 1 person ansobol
  • Protein interactions and disease: computational approaches to uncover the etiology of diseases
    Brief Bioinform (16 July 2007), bbm031.
    by Maricel G Kann
    posted to algorithms biology complex graph by AbnerCYH on 2007-11-13 10:44:03 as ** along with 4 people jyuh tmmurali jfr barriot
  • The small world of the cerebral cortex.
    Neuroinformatics, Vol. 2, No. 2. (2004), pp. 145-162.
    by O Sporns, JD Zwi
    posted to biology graph neuro by AbnerCYH on 2007-11-12 05:31:59 as ** along with 5 people and 1 group mague balicea xinian jmarcelino lilith 801
  • Minimum Membership Set Covering and the Consecutive Ones Property
    Algorithm Theory – SWAT 2006 (2006), pp. 339-350.
    by Michael Dom, Jiong Guo, Rolf Niedermeier, Sebastian Wernicke
    posted to algorithms biology complexity parameterized by AbnerCYH on 2007-11-11 18:09:19 as **
  • On The Parameterized Intractability Of Motif Search Problems
    Combinatorica, Vol. 26, No. 2. (30 April 2006), pp. 141-167.
    by Michael Fellows, Jens Gramm, Rolf Niedermeier
    posted to biology combinatorics complexity graph parameterized by AbnerCYH on 2007-11-10 19:08:20 as **
  • Parameterized Complexity and Biopolymer Sequence Comparison
    The Computer Journal, Vol. 51, No. 3. (27 June 2007), bxm035.
    by Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances Rosamond, Yinglei Song
    posted to biology complexity parameterized by AbnerCYH on 2007-11-10 18:58:22 as **
  • Genomic analysis of human microRNA transcripts.
    Proc Natl Acad Sci U S A (26 October 2007)
    by Harpreet Kaur K Saini, Sam Griffiths-Jones, Anton James J Enright
    posted to biology by AbnerCYH on 2007-11-07 04:48:35 as ** along with 11 people and 1 group jyuh tmmurali dchughes ealloza bootsy lp2 cabbagezs maximilianh RedmondSmyth gracio maralena csb_journal_club_public
  • Graph theoretical analysis of complex networks in the brain
    Nonlinear Biomedical Physics, Vol. 1 (5 July 2007)
    posted to biology complex dynamics graph neuro by AbnerCYH on 2007-10-26 09:47:00 as **
  • Graph theory and networks in Biology
    Systems Biology, IET, Vol. 1, No. 2. (2007), pp. 89-119.
    by O Mason, M Verwoerd
    posted to algorithms biology graph by AbnerCYH on 2007-10-14 12:47:57 as **
  • A network-based method for target selection in metabolic networks
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1616-1622.
    by R Guimera, M Sales-Pardo, LAN Amaral
    posted to algorithms biology graph by AbnerCYH on 2007-10-09 16:51:45 as **
  • Observing local and global properties of metabolic pathways: "load points" and "choke points" in the metabolic networks.
    Bioinformatics (8 May 2006)
    by Syed Asad A Rahman, Dietmar Schomburg
    posted to algorithms biology graph by AbnerCYH on 2007-10-09 16:51:44 as ** along with 6 people and 1 group kuhn tny bluto Nadam jdiggans mdstobbe Algorithms
  • Minimal cut sets in biochemical reaction networks.
    Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 226-234.
    by S Klamt, ED Gilles
    posted to algorithms biology graph by AbnerCYH on 2007-10-09 16:43:20 as ** along with 2 people tmmurali alexg
  • Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1546-1556.
    by C Grasso, C Lee
    posted to algorithms biology order by AbnerCYH on 2007-10-05 07:54:54 as ** along with 3 people scis0000001 treangen zmasek
  • The application of graph theoretical analysis to complex networks in the brain
    Clinical Neurophysiology, Vol. In Press, Corrected Proof
    by Jaap C Reijneveld, Sophie C Ponten, Henk W Berendse, Cornelis J Stam
    posted to biology complex graph neuro by AbnerCYH on 2007-09-28 16:29:52 as ** along with 3 people and 2 groups pbellec jmarcelino watson Functional_Imaging NeuralNetworks
  • Identification of network-level coding units for real-time representation of episodic experiences in the hippocampus.
    Proc Natl Acad Sci U S A, Vol. 102, No. 17. (26 April 2005), pp. 6125-6130.
    by L Lin, R Osan, S Shoham, W Jin, W Zuo, JZ Tsien
    posted to biology complex neuro by AbnerCYH on 2007-09-22 18:19:13 as ** along with 1 person rgayler
  • On testing consecutive-ones property in parallel
    Discrete Applied Mathematics, Vol. 88, No. 1-3. (9 November 1998), pp. 7-28.
    by Fred Annexstein, Ram Swaminathan
    posted to algorithms biology graph by AbnerCYH on 2007-09-05 15:19:56 as ** along with 1 group CSBBGraphTheory
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