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AbnerCYH graph [305 articles]

Recent papers added to AbnerCYH library classified by the tag graph. You can also see everyone's graph.
  • Classes of complex networks defined by role-to-role connectivity profiles
    Nat Phys, Vol. 3, No. 1. (January 2007), pp. 63-69.
    by Roger Guimera, Marta Sales-Pardo, Luis A Amaral
    posted to graph complex biology by AbnerCYH on 2008-05-16 05:28:44 as ** along with 4 people and 1 group aalibes okarsligil jaspervoskuilen biehl Bioinformatics
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to graph complex biology by AbnerCYH on 2008-05-16 05:28:30 as ** along with 13 people and 3 groups hryk margaritis cactus dbikard Garamonfok caseybrown biehl aalibes tmmurali dullhunk neils cmzmasek josedavid SynBioSys Centre de Recherches Interdisciplinaires GEB
  • Complex networks: Lies, damned lies and statistics
    Nat Phys, Vol. 2, No. 2. (February 2006), pp. 75-76.
    by Nunes, Roger Guimera
    posted to stochastic kdd graph complex biology by AbnerCYH on 2008-05-14 06:50:56 as ** along with 2 people RobMills Evangelia
  • Complex networks: Role model for modules
    Nat Phys, Vol. 3, No. 1. (January 2007), pp. 18-19.
    by Sergei Maslov
    posted to graph complex biology by AbnerCYH on 2008-05-14 06:24:07 as read
  • Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
    Research in Computational Molecular Biology (2007), pp. 16-31.
    by Rohit Singh, Jinbo Xu, Bonnie Berger
    posted to graph biology algorithms by AbnerCYH on 2008-05-08 19:53:01 as **
  • Separators for sphere-packings and nearest neighbor graphs
    J. ACM, Vol. 44, No. 1. (January 1997), pp. 1-29.
    by Gary L Miller, Shang-Hua Teng, William Thurston, Stephen A Vavasis
    posted to graph geometries combinatorics algorithms by AbnerCYH on 2008-05-08 19:24:16 as **
  • Protein side-chain packing problem: a maximum edge-weight clique algorithmic approach
    (2004), pp. 191-200.
    by Dukka KC Bahadur, Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki
    posted to graph biology algorithms by AbnerCYH on 2008-05-08 18:56:43 as **
  • Fast and accurate algorithms for protein side-chain packing
    J. ACM, Vol. 53, No. 4. (July 2006), pp. 533-557.
    by Jinbo Xu, Bonnie Berger
    posted to graph biology algorithms by AbnerCYH on 2008-05-08 18:56:38 as **
  • Recognizing the fold of a protein structure
    Bioinformatics, Vol. 19, No. 14. (22 September 2003), pp. 1748-1759.
    by Andrew Harrison, Frances Pearl, Ian Sillitoe, Tim Slidel, Richard Mott, Janet Thornton, Christine Orengo
    posted to graph complex biology algorithms by AbnerCYH on 2008-05-08 07:55:35 as **
  • Partitioned probe comparability graphs
    Theoretical Computer Science, Vol. 396, No. 1-3. (10 May 2008), pp. 212-222.
    by David B Chandler, Maw-Shang Chang, Ton Kloks, Jiping Liu, Sheng-Lung Peng
    posted to graph algorithms by AbnerCYH on 2008-05-03 04:28:23 as **
  • Survey of graph database models
    ACM Comput. Surv., Vol. 40, No. 1. (February 2008), pp. 1-39.
    by Renzo Angles, Claudio Gutierrez
    posted to graph algorithms by AbnerCYH on 2008-05-02 16:51:52 as ** along with 2 people pdlug bigbossman
  • Width Parameters Beyond Tree-width and their Applications
    The Computer Journal, Vol. 51, No. 3. (1 May 2008), pp. 326-362.
    by Petr Hlineny, Sang-Il Oum, Detlef Seese, Georg Gottlob
    posted to parameterized graph algorithms by AbnerCYH on 2008-05-02 15:58:05 as **
  • Combinatorial Optimization on Graphs of Bounded Treewidth
    The Computer Journal, Vol. 51, No. 3. (1 May 2008), pp. 255-269.
    by Hans L Bodlaender, Arie M Koster
    posted to parameterized graph algorithms by AbnerCYH on 2008-05-02 15:42:48 as *
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to graph complexity algorithms by AbnerCYH on 2008-05-02 08:41:08 as ** along with 24 people pbull jago Ema gtgt15 hryk nedwards i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus tny briordan deanmalmgren soramame_0518 jjray
  • Finding frequent patterns in a large sparse graph
    (2004)
    by M Kuramochi, G Karypis
    posted to kdd graph algorithms by AbnerCYH on 2008-04-23 01:57:03 as ** along with 3 people and 1 group josedavid azygmunt Repton AGH-IISG
  • Fundamentals of Algebraic Graph Transformation (Monographs in Theoretical Computer Science. An EATCS Series)
    (14 March 2006)
    by H Ehrig, K Ehrig, U Prange, G Taentzer
    posted to algebra algorithms automata graph by AbnerCYH on 2008-04-22 10:08:40 as ** along with 1 person leonardo
  • Summarization Graph Indexing: Beyond Frequent Structure-Based Approach
    Vol. 4947 (2008)
    by Lei Zou, Lei Chen, Huaming Zhang, Yansheng Lu, Qiang Lou
    posted to algorithms data_structure graph by AbnerCYH on 2008-04-21 15:41:28 as **
  • An algorithm and metric for network decomposition from similarity matrices: Application to positional analysis
    Social Networks, Vol. 30, No. 2. (2008), pp. 146-158.
    by Mo-Han Hsieh, Christopher L Magee
    posted to complex graph by AbnerCYH on 2008-04-14 11:04:30 as **
  • Complexes of Graphs with Bounded Matching Size
    Journal of Algebraic Combinatorics, Vol. 27, No. 3. (10 May 2008), pp. 331-349.
    by Svante Linusson, John Shareshian, Volkmar Welker
    posted to algebra graph topology by AbnerCYH on 2008-04-14 11:00:37 as **
  • Evolution of Eukaryotic Transcription Circuits
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1797-1799.
    by Brian B Tuch, Hao Li, Alexander D Johnson
    posted to biology complex graph by AbnerCYH on 2008-04-05 05:39:19 as ** along with 1 person djkt
  • An Inverse-Ackermann Type Lower Bound For Online Minimum Spanning Tree Verification
    Combinatorica, Vol. 26, No. 2. (April 2006), pp. 207-230.
    by Seth Pettie
    posted to algorithms graph by AbnerCYH on 2008-04-03 12:05:53 as **
  • Minimizing randomness in minimum spanning tree, parallel connectivity, and set maxima algorithms
    (2002), pp. 713-722.
    by Seth Pettie, Vijaya Ramachandran
    posted to algorithms graph parallel by AbnerCYH on 2008-04-03 12:02:12 as **
  • A Randomized Time-Work Optimal Parallel Algorithm for Finding a Minimum Spanning Forest
    SIAM J. Comput., Vol. 31, No. 6. (2002), pp. 1879-1895.
    by Seth Pettie, Vijaya Ramachandran
    posted to algorithms graph parallel stochastic by AbnerCYH on 2008-04-03 12:02:00 as **
  • A Faster Deterministic Algorithm for Minimum Spanning Trees
    (1997)
    by Bernard Chazelle
    posted to algorithms graph by AbnerCYH on 2008-04-03 11:54:01 as **
  • From time series to complex networks: The visibility graph
    Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 4972-4975.
    by Lucas Lacasa, Bartolo Luque, Fernando Ballesteros, Jordi Luque, Juan C Nuno
    posted to biology complex graph by AbnerCYH on 2008-04-02 01:15:29 as ** along with 2 people vrich biehl
  • A link between the Jordan curve theorem and the Kuratowski planarity criterion
    Am. Math. Monthly, Vol. 97, No. 3. (March 1990), pp. 216-218.
    by Carsten Thomassen
    posted to geometries graph math by AbnerCYH on 2008-03-29 18:23:40 as **
  • Comparability invariance of the fixed point property
    Order, Vol. 2, No. 3. (1985), pp. 269-274.
    by B Dreesen, W Poguntke, P Winkler
    posted to combinatorics graph order by AbnerCYH on 2008-03-29 11:44:25 as **
  • Chordal probe graphs
    Discrete Applied Mathematics, Vol. 143, No. 1-3. (30 September 2004), pp. 221-237.
    by Martin C Golumbic, Marina Lipshteyn
    posted to algorithms graph by AbnerCYH on 2008-03-29 10:10:53 as **
  • 2-Tree probe interval graphs have a large obstruction set
    Discrete Applied Mathematics, Vol. 150, No. 1-3. (1 September 2005), pp. 216-231.
    by Natasa Przulj, Derek G Corneil
    posted to algorithms graph by AbnerCYH on 2008-03-29 10:10:49 as **
  • Construction of probe interval models
    (2002), pp. 866-875.
    by Ross M Mcconnell, Jeremy P Spinrad
    posted to algorithms graph by AbnerCYH on 2008-03-29 10:10:45 as **
  • A polynomial time recognition algorithm for probe interval graphs
    (2001), pp. 477-486.
    by Julie L Johnson, Jeremy P Spinrad
    posted to algorithms graph by AbnerCYH on 2008-03-29 10:10:41 as **
  • On probe interval graphs
    Discrete Applied Mathematics, Vol. 88, No. 1-3. (9 November 1998), pp. 315-324.
    by FR Mcmorris, Chi Wang, Peisen Zhang
    posted to algorithms graph by AbnerCYH on 2008-03-29 10:10:39 as **
  • Dominating Sets in Chordal Graphs
    SIAM Journal on Computing, Vol. 11, No. 1. (1982), pp. 191-199.
    by Kellogg S Booth, Howard J Johnson
    posted to algorithms graph by AbnerCYH on 2008-03-29 06:25:31 as **
  • A faster deterministic algorithm for minimum spanning trees
    Foundations of Computer Science, 1997. Proceedings., 38th Annual Symposium on (1997), pp. 22-31.
    by B Chazelle
    posted to algorithms graph by AbnerCYH on 2008-03-28 19:38:03 as **
  • An $O(N + M)$-Time Algorithm for Finding a Minimum-Weight Dominating Set in a Permutation Graph
    SIAM Journal on Computing, Vol. 25, No. 2. (1996), pp. 404-419.
    by C Rhee, YD Liang, SK Dhall, S Lakshmivarahan
    posted to algorithms graph by AbnerCYH on 2008-03-26 15:28:19 as **
  • Planar Formulae and Their Uses
    SIAM Journal on Computing, Vol. 11, No. 2. (1982), pp. 329-343.
    by David Lichtenstein
    posted to algorithms graph by AbnerCYH on 2008-03-26 14:16:01 as **
  • Fast and Simple Algorithms for Recognizing Chordal Comparability Graphs and Interval Graphs
    SIAM Journal on Computing, Vol. 28, No. 3. (1998), pp. 1004-1020.
    by Wen L Hsu, Tze H Ma
    posted to algorithms graph order by AbnerCYH on 2008-03-26 14:12:04 as **
  • A New Parallel Algorithm for the Maximal Independent Set Problem
    SIAM Journal on Computing, Vol. 18, No. 2. (1989), pp. 419-427.
    by Mark Goldberg, Thomas Spencer
    posted to algorithms graph parallel by AbnerCYH on 2008-03-26 09:21:11 as **
  • An Efficient Parallel Algorithm that Finds Independent Sets of Guaranteed Size
    SIAM Journal on Discrete Mathematics, Vol. 6, No. 3. (1993), pp. 443-459.
    by Mark Goldberg, Thomas Spencer
    posted to algorithms graph parallel by AbnerCYH on 2008-03-26 09:21:04 as **
  • Fixed-Parameter Tractability, Definability, and Model-Checking
    SIAM Journal on Computing, Vol. 31, No. 1. (2001), pp. 113-145.
    by Jörg Flum, Martin Grohe
    posted to algorithms complexity graph logic parameterized by AbnerCYH on 2008-03-26 09:20:30 as **
  • A Separator Theorem for Chordal Graphs
    SIAM Journal on Algebraic and Discrete Methods, Vol. 5, No. 3. (1984), pp. 306-313.
    by John R Gilbert, Donald J Rose, Anders Edenbrandt
    posted to algorithms graph by AbnerCYH on 2008-03-26 09:20:29 as **
  • A Linear-Time Algorithm for Finding Tree-Decompositions of Small Treewidth
    SIAM Journal on Computing, Vol. 25, No. 6. (1996), pp. 1305-1317.
    by Hans L Bodlaender
    posted to algorithms graph topology by AbnerCYH on 2008-03-26 09:10:35 as **
  • Domination, Fractional Domination, 2-Packing, and Graph Products
    SIAM Journal on Discrete Mathematics, Vol. 7, No. 3. (1994), pp. 493-498.
    by David C Fisher
    posted to algebra algorithms graph optimization topology by AbnerCYH on 2008-03-26 09:09:17 as ** along with 1 person bigbossman
  • Complexity of Finding Embeddings in a $k$-Tree
    SIAM Journal on Algebraic and Discrete Methods, Vol. 8, No. 2. (1987), pp. 277-284.
    by Stefan Arnborg, Derek G Corneil, Andrzej Proskurowski
    posted to algebra algorithms graph by AbnerCYH on 2008-03-26 09:03:59 as ** along with 1 person chechetka
  • Distributed broadcast in unknown radio networks
    (2008), pp. 208-217.
    by Gianluca De Marco
    posted to algorithms graph by AbnerCYH on 2008-03-26 00:50:08 as **
  • The algebraic Monge property and path problems
    Discrete Applied Mathematics, Vol. 145, No. 3. (30 January 2005), pp. 455-464.
    by Wolfgang Bein, Peter Brucker, Larmore, Park
    posted to algebra algorithms graph by AbnerCYH on 2008-03-24 17:44:05 as **
  • QPath: a method for querying pathways in a protein-protein interaction network
    BMC Bioinformatics, Vol. 7 (2006), 199.
    by Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan
    posted to algorithms biology complex graph by AbnerCYH on 2008-03-24 14:07:13 as **
  • PathBLAST: a tool for alignment of protein interaction networks.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by BP Kelley, B Yuan, F Lewitter, R Sharan, BR Stockwell, T Ideker
    posted to algorithms biology complex graph by AbnerCYH on 2008-03-24 13:59:56 as ** along with 4 people sza dragonrez nuke2005 koller
  • Network biology: understanding the cell's functional organization
    Nature Reviews Genetics, Vol. 5 (February 2004), pp. 101-113.
    by Albert-László Barabási, Zoltán N Oltvai
    posted to biology complex graph by AbnerCYH on 2008-03-24 12:27:36 as read
  • Dali: a network tool for protein structure comparison
    Trends in Biochemical Sciences, Vol. 20, No. 11. (November 1995), pp. 478-480.
    by Liisa Holm, Chris Sander
    posted to biology complex graph by AbnerCYH on 2008-03-23 06:46:32 as **
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