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Ayest bibtex-import [112 articles]

Recent papers added to Ayest library classified by the tag bibtex-import. You can also see everyone's bibtex-import.
  • Non-approximability results for optimization problems on bounded degree instances
    (2001), pp. 453-461.
    by Luca Trevisan
    posted to alignment bibtex-import bioinformatic by Ayest on 2006-02-24 12:02:57 as **
  • Hardness of approximation for non-overlapping local alignments
    Discrete Appl. Math., Vol. 137, No. 3. (March 2004), pp. 293-309.
    by Hiroyuki Nagashima, Koichi Yamazaki
    posted to alignment bibtex-import bioinformatic by Ayest on 2006-02-24 12:02:20 as **
  • Inversions with deletions and duplications.
    Genetics, Vol. 140, No. 1. (May 1995), pp. 411-414.
    by AJ Gordon, JA Halliday
    posted to bibtex-import bioinformatic evolution by Ayest on 2006-02-23 09:34:04 as **
  • TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments.
    Bioinformatics, Vol. 20 (Jul 2004), pp. 1806-7.
    by I Milne, Frank Wright, Glenn Rowe, Marshall, Dirk Husmeier, Grainne Mcguire
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
    Bioinformatics, Vol. 21 (2005), pp. 1274-5.
    by D Paraskevis, K Deforche, P Lemey, Magiorkinis, AM Vandamme
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Detecting interspecific recombination with a pruned probabilistic divergence measure
    Bioinformatics, Vol. 21, No. 9. (2005), pp. 1797-806.
    by Dirk Husmeier, Frank Wright
    posted to alignment bibtex-import bioinformatic evolution by Ayest on 2005-09-10 19:11:52 as **
  • A fast algorithm for determining the best combination of local alignments to a query sequence.
    BMC Bioinformatics, Vol. 5 (2004)
    by Conant, Andreas Wagner
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
    Genome Res., Vol. 14, No. 7. (2004), pp. 1394-1403.
    by Aaron CE Darling, Bob Mau, Frederick R Blattner, Nicole T Perna
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Versatile and open software for comparing large genomes.
    Genome Biol J, Vol. 5 (2004)
    by S Kurtz, A Phillippy, Delcher, M Smoot, MS Humway, C Antonescu, Salzberg
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Efficient Approximation Algorithms for Tiling and Packing Problems with Rectangles
    Journal of Algorithms, Vol. 41, No. 2. (2001), pp. 443-470.
    by Piotr Berman, Bhaskar Dasgupta, S Muthukrishnan, Suneeta Ramaswami
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Hardness of approximation for non-overlapping local alignments
    Discrete Applied Mathematics, Vol. 137, No. 3. (2004), pp. 293-309.
    by Hiroyuki Nagashima, Koichi Yamazaki
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Nonoverlapping Local Alignments (Weighted Independent Sets of Axis-parallel Rectangles)
    Discrete Applied Mathematics, Vol. 71 (1996)
    by V Bafna, B Narayanan, R Ravi
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Replication orientation affects the rate and direction of bacterial gene evolution.
    J Mol Evol, Vol. 51 (2000), pp. 459-63.
    by Tillier, Collins
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Chargaff's legacy.
    Gene J., Vol. 261 (Dec 2000), pp. 127-37.
    by Forsdyke, Mortimer
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes.
    Bioinformatics J., Vol. 16 (Jun 2000), pp. 560-1.
    by Frank, AC Frank, Lobry, JR Lobry
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Symmetry observations in long nucleotide sequences.
    Nucleic Acids Res. J., Vol. 21 (Jun 1993), pp. 2797-800.
    by Prabhu
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Concordant evolution of coding and noncoding regions of DNA made possible by the universal rule of TA/CG deficiency-TG/CT excess.
    Proc. Natl. Acad. Sci. USA J., Vol. 86 (Nov 1989), pp. 8452-6.
    by T Yomo, S Ohno
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Evidence for a coding pattern on the non-coding strand of the E. coli genome.
    Nucleic Acids Res. J., Vol. 12 (Mar 1984), pp. 2235-41.
    by Alff C Steinberger
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Strong doublet preferences in nucleotide sequences and DNA geometry.
    J. Mol. Evol. J., Vol. 20 (1984), pp. 111-9.
    by R Nussinov
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Finding words with unexpected frequencies in deoxyribonucleic acid sequences
    J. R. Statist. Soc. B, Vol. 57, No. 1. (1995), pp. 205-220.
    by B Prum, F Rodolphe, E de Turckheim
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Switching record and order statistics via random contractions
    Statistics & Probability Letters, Vol. 73, No. 3. (2005), pp. 207-217.
    by Sevgi Y Oncel, Mohammad Ahsanullah, Fazil A Aliev, Funda Aygun
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Exact distribution for the local score of one i.i.d random sequence
    Journal of computational biology, Vol. 8 (2001), pp. 373-380.
    by S Mercier, JJ Daudin
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Widespread Occurrence of Small Inversions in the Chloroplast Genomes of Land Plants.
    Mol Cells J, Vol. 19 (Feb 2005), pp. 104-113.
    by Kim, Lee
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Computable bounds for geometric convergence rates of Markov chains
    Ann. Appl. Probab, Vol. 4 (1994), pp. 981-1011.
    by Meyn, Tweedie
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Quantitative convergence rates of Markov Chains: a simple account
    Elect. Comm in Probab., Vol. 7 (2002), pp. 123-128.
    by Jeffrey
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Exact distribution of word occurrences in a random sequence of letters
    J. Appl. Probab., Vol. 36, No. 1. (1999), pp. 179-193.
    by Stéphane Robin, Jean J Daudin
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • LD-SPatt: Large Deviations Statistics for Patterns on Markov Chains
    Journal of computational Biology, Vol. 11, No. 6. (2004), pp. 1023-1033.
    by Gregory Nuel
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Estimation in the Mixture Transition Distribution Model
    Journal of Time Series Analysis, Vol. 22, No. 4. (2001), pp. 379-397.
    by André Berchtold
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Accounting units in DNA.
    J Theor Biol J, Vol. 197 (Mar 1999), pp. 51-61.
    by Bell, Forsdyke
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Deviations from Chargaff's second parity rule correlate with direction of transcription.
    J Theor Biol J, Vol. 197 (1999), pp. 63-76.
    by Bell, Forsdyke
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Remarks on sequence characteristics of the DNA and transfer RNA of yeast.
    Proc Natl Acad Sci U S A J, Vol. 59 (Jan 1968), pp. 161-163.
    by E Chargaff, Shapiro
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Evolution of DNA base composition under no-strand-bias conditions when the substitution rates are not constant
    Mol Biol Evol, Vol. 16, No. 6. (1999), pp. 719-723.
    by JR Lobry, C Lobry
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • A nucleotide composition constraint of genome sequences
    Computational Biology and Chemistry, Vol. 28, No. 2. (2004), pp. 149-153.
    by Chun T Zhang, Ren Zhang
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.
    J Mol Evol J, Vol. 40 (Mar 1995), pp. 318-325.
    by N Sueoka
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Simultaneous test procedures - some theory of multiple comparisons
    Ann. Math. Stat., Vol. 40 (1969), pp. 224-250.
    by Gabriel
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Extreme value theory based on the r largest annual events: a robust approach
    Journal of Hydrology, Vol. 200, No. 1-4. (1997), pp. 295-306.
    by DJ Dupuis
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Extreme value theory based on the r largest annual events.
    Journal of Hydrology, Vol. 86, No. 1-2. (1986), pp. 27-43.
    by RL Smith
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Estimation of parameters and large quantiles based on the k largest observations.
    J. Am. Stat. Assoc., Vol. 73 (1978), pp. 812-815.
    by Ishay Weissman
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Rapid assessment of extremal statistics for gapped local alignment.
    Proc Int Conf Intell Syst Mol Biol J (1999), pp. 211-222.
    by R Olsen, R Bundschuh, T Hwa
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • The estimation of statistical parameters for local alignment score distributions.
    Nucleic Acids Res J, Vol. 29 (Jan 2001), pp. 351-361.
    by Altschul, R Bundschuh, R Olsen, T Hwa
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Applications and statistics for multiple high-scoring segments in molecular sequences
    Proc. Natl. Acad. Sci., Vol. 90 (1993), pp. 5873-5877.
    by Samuel Karlin, Altschul F Stephen
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Limit distribution of maximal non-aligned two-sequence segmental score.
    Ann. Probab., Vol. 22, No. 4. (1994), pp. 2022-2039.
    by Amir Dembo, Samuel Karlin, Ofer Zeitouni
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Proofs as programs.
    ACM Trans. Program. Lang. Syst., Vol. 7 (1985), pp. 113-136.
    by Bates, Constable
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
    Proc. Natl. Acad. Sci. USA, Vol. 87, No. 6. (1990), pp. 2264-2268.
    by Samuel Karlin, Stephen F Altschul
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Basic local alignment search tool.
    J Mol Biol J, Vol. 215 (Oct 1990), pp. 403-410.
    by Altschul, W Gish, W Miller, Myers, Lipman
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • A general and fast scoring function for protein-ligand interactions: a simplified potential approach.
    J Med Chem J, Vol. 42 (Mar 1999), pp. 791-804.
    by I Muegge, Martin
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • A simple method for displaying the hydropathic character of a protein.
    J Mol Biol J, Vol. 157 (1982), pp. 105-132.
    by J Kyte, Doolittle
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • Amino acid substitution matrices from protein blocks.
    Proc Natl Acad Sci U S A J, Vol. 89 (Nov 1992), pp. 10915-9.
    by S Henikoff, Henikoff
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • A universal data compression system.
    IEEE Trans. Inf. Theory, Vol. 29 (1983), pp. 656-664.
    by Jorma Rissanen
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
  • The context-tree weighting method: Basic properties.
    IEEE Trans. Inf. Theory, Vol. 41, No. 3. (1995), pp. 653-664.
    by Willems, Shtarkov, Tjalkens
    posted to bibtex-import by Ayest on 2005-09-10 19:11:52 as **
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