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Doug library [74 articles]

Статьи, недавно добавленные в библиотеку Doug .
  • Simulation of biological cell sorting using a two-dimensional extended Potts model.
    Physical review letters, Vol. 69, No. 13. (28 September 1992), pp. 2013-2016.
    by F Graner, JA Glazier
    posted to compucell3d by Doug on 2008-07-07 18:11:23 as **
  • Cell elongation is key to in silico replication of in vitro vasculogenesis and subsequent remodeling
    Developmental Biology, Vol. 289, No. 1. (1 January 2006), pp. 44-54.
    by Roeland M Merks, Sergey V Brodsky, Michael S Goligorksy, Stuart A Newman, James A Glazier
    posted to compucell3d by Doug on 2008-07-07 18:06:18 as ** along with 1 person lisa1
  • On multiscale approaches to three-dimensional modelling of morphogenesis.
    Journal of the Royal Society, Interface / the Royal Society, Vol. 2, No. 3. (22 June 2005), pp. 237-253.
    by R Chaturvedi, C Huang, B Kazmierczak, T Schneider, JA Izaguirre, T Glimm, HG Hentschel, JA Glazier, SA Newman, MS Alber
    posted to compucell3d by Doug on 2008-07-07 18:03:19 as **
  • Adhesion between cells, diffusion of growth factors, and elasticity of the AER produce the paddle shape of the chick limb
    Physica A: Statistical and Theoretical Physics, Vol. 373 (1 January 2007), pp. 521-532.
    by Nikodem J Poplawski, Maciej Swat, Scott, James A Glazier
    posted to compucell3d by Doug on 2008-07-07 17:56:20 as ** along with 1 person nicholasflann
  • A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis
    Computer Physics Communications, Vol. 176, No. 11-12. (June 2007), pp. 670-681.
    by Nan Chen, James A Glazier, Jesus A Izaguirre, Mark S Alber
    posted to compucell3d by Doug on 2008-07-07 17:52:19 as ** along with 2 people gokhan nicholasflann
  • Periodic pattern formation in reaction-diffusion systems: an introduction for numerical simulation.
    Anatomical science international / Japanese Association of Anatomists, Vol. 79, No. 3. (September 2004), pp. 112-123.
    by T Miura, PK Maini
    posted to reaction-diffusion by Doug on 2008-07-07 16:12:25 as ****
  • Polarization of the C. elegans Embryo by RhoGAP-Mediated Exclusion of PAR-6 from Cell Contacts
    Science, Vol. 320, No. 27. (27 June 2008), pp. 1771-1774.
    by Dorian C Anderson, Jason S Gill, Ryan M Cinalli, Jeremy Nance
    posted to cell-cell c_elegans by Doug on 2008-06-27 18:43:46 as **
  • Organism size promotes the evolution of specialized cells in multicellular digital organisms.
    Journal of evolutionary biology, Vol. 21, No. 1. (January 2008), pp. 104-110.
    by M Willensdorfer
    posted to simulation by Doug on 2008-06-11 19:04:08 as **
  • Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior.
    BMC systems biology, Vol. 1 (2007)
    by SH Robertson, CK Smith, AL Langhans, SE McLinden, MA Oberhardt, KR Jakab, B Dzamba, DW DeSimone, JA Papin, SM Peirce
    posted to simulation by Doug on 2008-06-11 18:58:12 as **
  • Toward Verified Biological Models
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 5, No. 2. (2008), pp. 223-234.
    by Avital Sadot, Jasmin Fisher, Dan Barak, Yishai Admanit, Michael J Stern, Hubbard, David Harel
    posted to modeling by Doug on 2008-06-10 18:55:11 as ** along with 1 person leonardo
  • Adhesion in Development: An Historical Overview
    Developmental Biology, Vol. 180, No. 2. (15 December 1996), pp. 377-388.
    by Malcolm S Steinberg
    posted to devbio adhesion by Doug on 2008-06-09 19:09:32 as **
  • Mechanics in embryogenesis and embryonics: prime mover or epiphenomenon?
    The International journal of developmental biology, Vol. 50, No. 2-3. (2006), pp. 245-253.
    by R Gordon
    posted to no-tag by Doug on 2008-06-09 18:57:44 as **
  • Do morphogen gradients arise by diffusion?
    Dev Cell, Vol. 2, No. 6. (June 2002), pp. 785-796.
    by AD Lander, Q Nie, FY Wan
    posted to morphogen modeling by Doug on 2008-06-08 17:05:15 as ** along with 1 person mjoach
  • Computational cell model based on autonomous cell movement regulated by cell-cell signalling successfully recapitulates the "inside and outside" pattern of cell sorting.
    BMC systems biology, Vol. 1 (2007)
    by TT Maeda, I Ajioka, K Nakajima
    posted to simulation by Doug on 2008-05-19 17:49:02 as **
  • Morphomechanics: goals, basic experiments and models.
    The International journal of developmental biology, Vol. 50, No. 2-3. (2006), pp. 81-92.
    by LV Beloussov, VI Grabovsky
    posted to devbio by Doug on 2008-05-17 16:10:48 as **
  • A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.
    Cell, Vol. 133, No. 2. (18 April 2008), pp. 364-374.
    by CC Fowlkes, CL Hendriks, SV Keränen, GH Weber, O Rübel, MY Huang, S Chatoor, AH DePace, L Simirenko, C Henriquez, A Beaton, R Weiszmann, S Celniker, B Hamann, DW Knowles, MD Biggin, MB Eisen, J Malik
    posted to spatiotemporal drosophila by Doug on 2008-05-16 13:45:37 as ** along with 2 people adepace cite0000
  • Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans
    Nature Biotechnology, Vol. 25, No. 6. (07 May 2007), pp. 663-668.
    by Denis Dupuy, Nicolas Bertin, César A Hidalgo, Kavitha Venkatesan, Domena Tu, David Lee, Jennifer Rosenberg, Nenad Svrzikapa, Aurélie Blanc, Alain Carnec, Anne-Ruxandra Carvunis, Rock Pulak, Jane Shingles, John Reece-Hoyes, Rebecca Hunt-Newbury, Ryan Viveiros, William A Mohler, Murat Tasan, Frederick P Roth, Christian Le Peuch, Ian A Hope, Robert Johnsen, Donald G Moerman, Albert-László Barabási, David Baillie, Marc Vidal
    posted to c_elegans by Doug on 2008-05-16 13:35:20 as ** along with 2 people and 3 groups ana brant structural_bioinformatics Bioinformatics EisenLab
  • Systematic analysis of pleiotropy in C. elegans early embryogenesis.
    PLoS computational biology, Vol. 4, No. 2. (February 2008)
    by L Zou, S Sriswasdi, B Ross, PV Missiuro, J Liu, H Ge
    posted to c_elegans by Doug on 2008-05-16 13:30:11 as **
  • Diverse roles of actin in C. elegans early embryogenesis
    BMC Developmental Biology, Vol. 7 (24 December 2007), 142.
    by Nathalie Velarde, Kristin C Gunsalus, Fabio Piano
    posted to c_elegans by Doug on 2008-05-16 13:28:05 as **
  • Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis
    Nature, Vol. 436, No. 7052., pp. 861-865.
    by Kristin C Gunsalus, Hui Ge, Aaron J Schetter, Debra S Goldberg, Jing-Dong J Han, Tong Hao, Gabriel F Berriz, Nicolas Bertin, Jerry Huang, Ling-Shiang Chuang, Ning Li, Ramamurthy Mani, Anthony A Hyman, Birte Sönnichsen, Christophe J Echeverri, Frederick P Roth, Marc Vidal, Fabio Piano
    posted to systems_biology c_elegans by Doug on 2008-05-16 13:26:31 as ** along with 7 people ksiek carlk nirfriedman koller patrycja_missiuro mingzhi jiny
  • The evolution of robust development and homeostasis in artificial organisms.
    PLoS computational biology, Vol. 4, No. 3. (March 2008)
    by D Basanta, M Miodownik, B Baum
    posted to cellular_automata by Doug on 2008-04-26 18:11:27 as **
  • A framework for three-dimensional simulation of morphogenesis.
    IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 2, No. 4. (c 2005), pp. 273-288.
    by TM Cickovski, C Huang, R Chaturvedi, T Glimm, HG Hentschel, MS Alber, JA Glazier, SA Newman, JA Izaguirre
    posted to simulation compucell3d by Doug on 2008-04-26 16:29:05 as **
  • The chemical basis of morphogenesis. 1953.
    Bull Math Biol, Vol. 52, No. 1-2. (1990)
    by AM Turing
    posted to modeling by Doug on 2008-04-26 16:27:15 as ** along with 1 person dullhunk
  • Cellular automata for exploring gene regulation in Drosophila segmentation
    Vol. 5275 (2004), pp. 266-277.
    by MJ Berryman, A Allison, D Abbott
    edited by D Nicolau, UR Muller, JM Dell
    posted to cellular_automata by Doug on 2008-04-26 16:21:05 as **
  • Three Ways to Grow Designs: A Comparison of Embryogenies for an Evolutionary Design Problem
    Vol. 1 (1999), pp. 35-43.
    by Peter Bentley, Sanjeev Kumar
    edited by Wolfgang Banzhaf, Jason Daida, Agoston E Eiben, Max H Garzon, Vasant Honavar, Mark Jakiela, Robert E Smith
    posted to simulation by Doug on 2008-04-26 16:06:11 as **
  • Cellular automata models for embryogenesis
    by Madhur Tulsiani
    posted to simulation cellular_automata by Doug on 2008-04-26 16:02:16 as **
  • Explaining a complex living system: dynamics, multi-scaling and emergence.
    Journal of the Royal Society, Interface / the Royal Society, Vol. 4, No. 13. (22 April 2007), pp. 175-182.
    by IR Cohen, D Harel
    posted to modeling by Doug on 2008-04-26 15:53:54 as **
  • Control of epidermal stem cell clusters by Notch-mediated lateral induction.
    Developmental biology, Vol. 258, No. 1. (1 June 2003), pp. 141-153.
    by NJ Savill, JA Sherratt
    posted to simulation modeling epithelium by Doug on 2008-04-26 15:44:14 as **
  • A cellular automata model for cell differentiation
    Physica A: Statistical Mechanics and its Applications, Vol. 322 (1 May 2003), pp. 555-566.
    by HS Silva, ML Martins
    posted to cellular_automata by Doug on 2008-04-26 06:11:52 as *
  • Modeling epithelial cell behavior and organization.
    IEEE transactions on nanobioscience, Vol. 6, No. 1. (March 2007), pp. 77-85.
    by S Maheswaran, PM Speight, P Hammond
    posted to simulation modeling epithelium cellular_automata by Doug on 2008-04-26 05:29:55 as **
  • Modelling Morphogenesis: From Single Cells to Crawling Slugs
    Journal of Theoretical Biology, Vol. 184, No. 3. (7 February 1997), pp. 229-235.
    by Nicholas J Savill, Paulien Hogeweg
    posted to simulation cellular_automata by Doug on 2008-04-25 23:48:54 as **
  • A computer simulation of geometrical configurations during cell division.
    Journal of theoretical biology, Vol. 106, No. 3. (7 February 1984), pp. 423-435.
    by H Honda, H Yamanaka, M Dan-Sohkawa
    posted to simulation modeling by Doug on 2008-04-25 23:41:00 as **
  • Geometrical models for cells in tissues.
    International review of cytology, Vol. 81 (1983), pp. 191-248.
    by H Honda
    posted to modeling by Doug on 2008-04-25 23:37:06 as **
  • Geometrical models of the renewal of the epidermis.
    Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie, Vol. 323, No. 1. (January 2000), pp. 49-56.
    by B Dubertret, N Rivier
    posted to modeling by Doug on 2008-04-25 23:32:27 as **
  • A three-dimensional dynamic simulation model of epithelial tissue renewal.
    Analytical and quantitative cytology and histology / the International Academy of Cytology [and] American Society of Cytology, Vol. 19, No. 2. (April 1997), pp. 174-184.
    by CJ Clem, D König, JP Rigaut
    posted to simulation by Doug on 2008-04-25 23:31:09 as **
  • A model for dictyostelium slug movement
    Journal of theoretical biology, Vol. 199, No. 2. (21 July 1999), pp. 125-136.
    by T Bretschneider, B Vasiev, CJ Weijer
    posted to simulation by Doug on 2008-04-25 23:27:17 as **
  • A dynamic simulation model of tissue growth and cell patterning.
    Cell differentiation, Vol. 19, No. 1. (July 1986), pp. 19-33.
    by L Bodenstein
    posted to simulation by Doug on 2008-04-25 23:25:28 as **
  • A dynamic cell model for the formation of epithelial tissues
    Philosophical Magazine B (July 2001), pp. 699-719.
    by T Nagai, H Honda
    posted to simulation epithelium by Doug on 2008-04-25 19:30:52 as **
  • A three-dimensional vertex dynamics cell model of space-filling polyhedra simulating cell behavior in a cell aggregate.
    Journal of theoretical biology, Vol. 226, No. 4. (21 February 2004), pp. 439-453.
    by H Honda, M Tanemura, T Nagai
    posted to simulation by Doug on 2008-04-25 19:07:43 as **
  • Computer simulation of emerging asymmetry in the mouse blastocyst.
    Development (Cambridge, England), Vol. 135, No. 8. (April 2008), pp. 1407-1414.
    by H Honda, N Motosugi, T Nagai, M Tanemura, T Hiiragi
    posted to simulation mouse by Doug on 2008-04-25 19:02:38 as **
  • Executable cell biology
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1239-1249.
    by Jasmin Fisher, Thomas A Henzinger
    posted to simulation biology by Doug on 2008-04-23 18:43:04 as ** along with 9 people and 2 groups tmmurali austin julius dbikard neils cjeans hpaces mircea tlandrain csb_journal_club_public Centre de Recherches Interdisciplinaires
  • Modeling the C. elegans nematode and its environment using a particle system
    Journal of Theoretical Biology, Vol. In Press, Accepted Manuscript
    by Mauno Rönkkö, Garry Wong
    posted to simulation c_elegans alife by Doug on 2008-04-23 18:31:25 as **
  • Cleavage Plane Specification in C. elegans: How to Divide the Spoils
    Cell, Vol. 84, No. 2. (26 January 1996), pp. 195-198.
    by John White, Susan Strome
    posted to devbio c_elegans by Doug on 2008-04-22 19:02:25 as *****
  • A cell-centered approach to developmental biology
    Physica A: Statistical Mechanics and its Applications, Vol. 352, No. 1. (1 July 2005), pp. 113-130.
    by Roeland M Merks, James A Glazier
    posted to modeling compucell3d cellular by Doug on 2008-03-18 00:53:20 as ** along with 1 person lisa1
  • Multicellular computer simulation of morphogenesis: blastocoel roof thinning and matrix assembly in Xenopus laevis.
    Dev Biol, Vol. 271, No. 1. (1 July 2004), pp. 210-222.
    by D Longo, SM Peirce, TC Skalak, L Davidson, M Marsden, B Dzamba, DW DeSimone
    posted to simulation by Doug on 2008-03-18 00:04:25 as ** along with 1 person mhucka
  • Assembly Mechanism of the Contractile Ring for Cytokinesis by Fission Yeast.
    Science (13 December 2007)
    by Dimitrios Vavylonis, Jian-Qiu Q Wu, Steven Hao, Ben O'Shaughnessy, Thomas D D Pollard
    posted to cytokinesis simulation by Doug on 2008-01-04 16:26:17 as ***
  • Assessing normal embryogenesis in Caenorhabditis elegans using a 4D microscope: variability of development and regional specification.
    Dev Biol, Vol. 184, No. 2. (15 April 1997), pp. 234-265.
    by R Schnabel, H Hutter, D Moerman, H Schnabel
    posted to c_elegans devbio by Doug on 2007-11-27 12:42:53 as ****
  • The embryonic cell lineage of the nematode Caenorhabditis elegans.
    Dev Biol, Vol. 100, No. 1. (November 1983), pp. 64-119.
    by JE Sulston, E Schierenberg, JG White, JN Thomson
    posted to c_elegans devbio by Doug on 2007-11-27 12:27:38 as read
  • A Grand Challenge for Computing: Towards Full Reactive Modeling of a Multi-Cellular Animal
    The Bulletin of the European Association for Theoretical Computer Science, Vol. 81 (2003), pp. 226-235.
    by D Harel
    posted to biology devbiosim simulation by Doug on 2007-10-15 03:38:47 as read
  • Simulations of the erythrocyte cytoskeleton at large deformation. II. Micropipette aspiration.
    Biophys J, Vol. 75, No. 3. (September 1998), pp. 1584-1597.
    by DE Discher, DH Boal, SK Boey
    posted to biology simulation by Doug on 2007-10-15 02:11:04 as **
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