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Ema library [260 articles]

Статьи, недавно добавленные в библиотеку Ema .
  • [duplicate] Local Function Conservation in Sequence and Structure Space
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000105.
    by Nils Weinhold, Oliver Sander, Francisco S Domingues, Thomas Lengauer, Ingolf Sommer
    posted to no-tag by Ema on 2008-07-07 23:26:46 as **
  • Local Function Conservation in Sequence and Structure Space
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000105.
    by Nils Weinhold, Oliver Sander, Francisco S Domingues, Thomas Lengauer, Ingolf Sommer
    posted to no-tag by Ema on 2008-07-07 23:13:32 as ** along with 1 person cabbagesofdoom
  • Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000107.
    by Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus, Ole Lund
    posted to no-tag by Ema on 2008-07-07 23:13:03 as **
  • Colored extrinsic fluctuations and stochastic gene expression
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Vahid Shahrezaei, Julien F Ollivier, Peter S Swain
    posted to no-tag by Ema on 2008-07-02 17:05:44 as ** along with 2 people margaritis jjray
  • Recursive construction of perfect DNA molecules from imperfect oligonucleotides.
    Molecular systems biology, Vol. 4 (2008)
    by G Linshiz, TB Yehezkel, S Kaplan, I Gronau, S Ravid, R Adar, E Shapiro
  • Recurrent design patterns in the feedback regulation of the mammalian signalling network
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Stefan Legewie, Hanspeter Herzel, Hans V Westerhoff, Nils Bluthgen
    posted to no-tag by Ema on 2008-07-02 17:05:18 as ** along with 2 people bootsy roys
  • Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Naoyuki Sugiyama, Hirofumi Nakagami, Keiichi Mochida, Arsalan Daudi, Masaru Tomita, Ken Shirasu, Yasushi Ishihama
    posted to no-tag by Ema on 2008-07-02 17:05:03 as ** along with 3 people kengg zwang neils
  • Intronic Alternative Splicing Regulators Identified by Comparative Genomics in Nematodes
    PLoS Comput Biol, Vol. 2, No. 7. (14 July 2006), e86.
    by Jennifer L Kabat, Sergio Barberan-Soler, Paul Mckenna, Hiram Clawson, Tracy Farrer, Alan M Zahler
    posted to no-tag by Ema on 2008-06-30 14:44:19 as **
  • Transcription in Mycoplasma pneumoniae.
    Nucleic acids research, Vol. 28, No. 22. (15 November 2000), pp. 4488-4496.
    posted to no-tag by Ema on 2008-06-30 11:24:12 as ** along with 1 person shana
  • Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins
    PLoS Comput Biol, Vol. 4, No. 6. (27 June 2008), e1000099.
    by Jason W Locasale, Arup K Chakraborty
    posted to no-tag by Ema on 2008-06-29 12:19:39 as ** along with 1 person Schmidtc
  • Why are
    by Vladimir N Uversky, Joel R Gillespie, Anthony L Fink
    posted to no-tag by Ema on 2008-06-24 18:46:39 as ** along with 2 people taianah Evangelia
  • Protein folding: Chaperone embrace
    Nature Reviews Molecular Cell Biology, Vol. 9, No. 7. (18 June 2008), pp. 497-497.
    by Francesca Cesari
    posted to tob by Ema on 2008-06-24 18:22:44 as **
  • Alternative splicing and genome complexity.
    Nat Genet, Vol. 30, No. 1. (January 2002), pp. 29-30.
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
  • Large-Scale Copy Number Polymorphism in the Human Genome
    Science, Vol. 305, No. 5683. (23 July 2004), pp. 525-528.
    by Jonathan Sebat, B Lakshmi, Jennifer Troge, Joan Alexander, Janet Young, Par Lundin, Susanne Maner, Hillary Massa, Megan Walker, Maoyen Chi, Nicholas Navin, Robert Lucito, John Healy, James Hicks, Kenny Ye, Andrew Reiner, Conrad C Gilliam, Barbara Trask, Nick Patterson, Anders Zetterberg, Michael Wigler
  • Detection of large-scale variation in the human genome.
    Nat Genet, Vol. 36, No. 9. (September 2004), pp. 949-951.
    by AJ Iafrate, L Feuk, MN Rivera, ML Listewnik, PK Donahoe, Y Qi, SW Scherer, C Lee
  • A Coarse-Grained Biophysical Model of E. coli and Its Application to Perturbation of the rRNA Operon Copy Number
    PLoS Comput Biol, Vol. 4, No. 5. (2 May 2008), e1000038.
    by Arbel D Tadmor, Tsvi Tlusty
    posted to no-tag by Ema on 2008-06-23 17:29:54 as **
  • Discovering sequence motifs with arbitrary insertions and deletions.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by MC Frith, NF Saunders, B Kobe, TL Bailey
    posted to no-tag by Ema on 2008-06-23 17:29:42 as ** along with 5 people dquest Stew gjuggler neils cabbagesofdoom
  • The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures
    PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000070.
    by Diego U Ferreiro, Aleksandra M Walczak, Elizabeth A Komives, Peter G Wolynes
    posted to no-tag by Ema on 2008-06-23 17:29:24 as **
  • Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins
    PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000063.
    by Nan Song, Jacob M Joseph, George B Davis, Dannie Durand
    posted to no-tag by Ema on 2008-06-23 17:29:10 as ** along with 2 people zwang tmmurali
  • Dynamic analysis of integrated signaling, metabolic, and regulatory networks.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by J Min Lee, EP Gianchandani, JA Eddy, JA Papin
    posted to no-tag by Ema on 2008-06-23 17:28:57 as ** along with 3 people roys lymxz bootsy
  • Uncovering Interactions in the Frequency Domain
    PLoS Comput Biol, Vol. 4, No. 5. (30 May 2008), e1000087.
    by Shuixia Guo, Jianhua Wu, Mingzhou Ding, Jianfeng Feng
    posted to no-tag by Ema on 2008-06-23 16:55:53 as ** along with 2 people j-ito Borelli
  • A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
    PLoS Comput Biol, Vol. 4, No. 5. (30 May 2008), e1000069.
    by Sean R Eddy
    posted to no-tag by Ema on 2008-06-23 16:55:40 as **
  • CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing
    PLoS Comput Biol, Vol. 4, No. 6. (6 June 2008), e1000090.
    by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P Xing
  • Conformational proofreading: the impact of conformational changes on the specificity of molecular recognition.
    PLoS ONE, Vol. 2, No. 5. (2007)
    by Y Savir, T Tlusty
    posted to no-tag by Ema on 2008-06-20 14:41:53 as ** along with 2 people nigham jjray
  • Parallel techniques for physically based simulation on multi-core processor architectures
    Computers & Graphics, Vol. 32, No. 1. (February 2008), pp. 25-40.
    by Bernhard Thomaszewski, Simon Pabst, Wolfgang Blochinger
    posted to no-tag by Ema on 2008-06-16 09:49:40 as ** along with 2 people pescuma ignacio
  • Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
    Science, Vol. 302, No. 5652. (12 December 2003), pp. 1960-1963.
    by AG Clark, S Glanowski, R Nielsen, PD Thomas, A Kejariwal, MA Todd, DM Tanenbaum, D Civello, F Lu, B Murphy, S Ferriera, G Wang, X Zheng, TJ White, JJ Sninsky, MD Adams, M Cargill
  • Comparative conservation analysis of the human mitotic phosphoproteome
    Bioinformatics (20 April 2008), btn197.
    by Rainer Malik, Erich A Nigg, Roman Korner
    posted to no-tag by Ema on 2008-06-13 14:04:37 as ** along with 2 people niallhaslam renatomilani
  • Positive selection drives a correlation between nonsynonymous/ synonymous divergence and functional divergence.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Jacob A A Tennessen
    posted to no-tag by Ema on 2008-06-13 14:04:30 as ** along with 3 people APRegier djkt gjuggler
  • Distinguishing protein-coding and noncoding genes in the human genome
    Proceedings of the National Academy of Sciences (26 November 2007), 0709013104.
    by Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff, Michael F Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S Lander
  • The MARTINI Coarse-Grained Force Field: Extension to Proteins
    J. Chem. Theory Comput. (16 April 2008)
    by Luca Monticelli, Senthil K Kandasamy, Xavier Periole, Ronald G Larson, Peter D Tieleman, Siewert-Jan Marrink
  • Comparative genome assembly.
    Brief Bioinform, Vol. 5, No. 3. (September 2004), pp. 237-248.
    by M Pop, A Phillippy, AL Delcher, SL Salzberg
  • PLoS Computational Biology: An Introduction to Bioinformatics for Glycomics Research
    posted to no-tag by Ema on 2008-06-04 14:12:50 as **
  • PLoS Computational Biology: Uncovering Interactions in the Frequency Domain
    posted to no-tag by Ema on 2008-06-04 14:11:21 as **
  • PLoS Computational Biology: A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
    posted to no-tag by Ema on 2008-06-04 14:10:46 as ** along with 3 people lp2 reyez cabbagesofdoom
  • De novo repeat classification and fragment assembly.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1786-1796.
    by PA Pevzner, H Tang, G Tesler
  • PLoS Computational Biology: Quasispecies Made Simple
    posted to catastrophe by Ema on 2008-05-21 22:30:00 as **
  • Expected Gene Order Distances and Model Selection in Bacteria.
    Bioinformatics (Oxford, England) (1 April 2008)
    by Daniel Dalevi, Niklas Eriksen
  • Eukaryotic transcription factor binding sites - modeling and integrative search methods
    Bioinformatics (21 April 2008), btn198.
    by Sridhar Hannenhalli
  • PLoS ONE: Implications from a Network-Based Topological Analysis of Ubiquitin Unfolding Simulations
    posted to protein by Ema on 2008-05-17 13:10:32 as **
  • PLoS Computational Biology: Short-Term Memory Trace in Rapidly Adapting Synapses of Inferior Temporal Cortex
    posted to neuro by Ema on 2008-05-17 13:09:36 as **
  • PLoS Computational Biology: Measuring Global Credibility with Application to Local Sequence Alignment
    posted to no-tag by Ema on 2008-05-17 13:09:12 as **
  • PLoS Computational Biology: The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures
    posted to no-tag by Ema on 2008-05-17 13:08:52 as **
  • PLoS Computational Biology: Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins
    posted to no-tag by Ema on 2008-05-17 13:08:32 as **
  • Empirical comparison of ab initio repeat finding programs
    Nucl. Acids Res. (20 February 2008), gkn064.
    by Surya Saha, Susan Bridges, Zenaida V Magbanua, Daniel G Peterson
  • Estimating the tempo and mode of gene family evolution from comparative genomic data
    Genome Res., Vol. 15, No. 8. (1 August 2005), pp. 1153-1160.
    by Matthew W Hahn, Tijl De Bie, Jason E Stajich, Chi Nguyen, Nello Cristianini
    posted to bioinf by Ema on 2008-05-15 21:51:54 as **
  • Improved tools for biological sequence comparison.
    Proc Natl Acad Sci U S A, Vol. 85, No. 8. (April 1988), pp. 2444-2448.
    by WR Pearson, DJ Lipman
  • An optimized energy potential can predict SH2 domain-peptide interactions : Nature Precedings
    posted to no-tag by Ema on 2008-05-15 10:43:00 as **
  • The look-ahead effect of phenotypic mutations
    Biology Direct, Vol. 3 (14 May 2008), 18.
    by Dion J Whitehead, Claus O Wilke, David Vernazobres, Erich Bornberg-Bauer
    posted to no-tag by Ema on 2008-05-15 10:32:00 as **
  • U12 intron positions are more strongly conserved between animals and plants than U2 intron positions
    Biology Direct, Vol. 3, No. 1. (2008)
    by Malay Basu, Wojciech Makalowski, Igor Rogozin, Eugene Koonin
    posted to no-tag by Ema on 2008-05-15 10:31:15 as ** along with 1 person mariakmejia
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