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Olaf_Ilzins microbial_diversity [46 articles]

Recent papers added to Olaf_Ilzins library classified by the tag microbial_diversity. You can also see everyone's microbial_diversity.
  • Comparisons of Different Hypervariable Regions of rrs Genes for Use in Fingerprinting of Microbial Communities by PCR-Denaturing Gradient Gel Electrophoresis
    Appl. Environ. Microbiol., Vol. 70, No. 8. (1 August 2004), pp. 4800-4806.
    by Zhongtang Yu, Mark Morrison
    posted to validation molecular_techniques microbial_diversity dgge 16s by Olaf_Ilzins on 2008-06-13 15:59:27 as **
  • Evaluations of Different Hypervariable Regions of Archaeal 16S rRNA Genes in Profiling of Methanogens by Archaea-Specific PCR and Denaturing Gradient Gel Electrophoresis
    Appl. Environ. Microbiol., Vol. 74, No. 3. (1 February 2008), pp. 889-893.
    by Zhongtang Yu, Ruben Garcia-Gonzalez, Floyd L Schanbacher, Mark Morrison
    posted to microbial_diversity dgge 16s by Olaf_Ilzins on 2008-06-13 15:51:31 as **
  • Use of Single-Point Genome Signature Tags as a Universal Tagging Method for Microbial Genome Surveys
    Appl. Environ. Microbiol., Vol. 72, No. 3. (1 March 2006), pp. 2092-2101.
    by Daniel van der Lelie, Celine Lesaulnier, Sean Mccorkle, Joke Geets, Safiyh Taghavi, John Dunn
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-06-10 15:37:19 as **
  • Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies
    Appl. Environ. Microbiol., Vol. 73, No. 1. (1 January 2007), pp. 278-288.
    by Rebecca J Case, Yan Boucher, Ingela Dahllof, Carola Holmstrom, Ford W Doolittle, Staffan Kjelleberg
    posted to molecular_techniques microbial_diversity 16s by Olaf_Ilzins on 2008-06-09 16:02:23 as **
  • Phylogenetic Approaches for Describing and Comparing the Diversity of Microbial Communities
    Appl. Environ. Microbiol., Vol. 68, No. 8. (1 August 2002), pp. 3673-3682.
    by Andrew P Martin
    posted to review microbial_diversity by Olaf_Ilzins on 2008-06-09 15:24:56 as ** along with 4 people and 2 groups djkt mcox jmeppley Thaverkamp iSEEM Microbial-Ecology
  • Quantitative multiplexing analysis of PCR-amplified ribosomal RNA genes by hierarchical oligonucleotide primer extension reaction
    Nucl. Acids Res., Vol. 35, No. 11. (28 June 2007), e82.
    by Jer-Horng Wu, Wen-Tso Liu
    posted to molecular_techniques microbial_diversity hope by Olaf_Ilzins on 2008-05-29 19:01:09 as **
  • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.
    Appl Environ Microbiol, Vol. 68, No. 8. (August 2002), pp. 3878-3885.
    by SA Connon, SJ Giovannoni
    posted to microbial_diversity cultures culturable_non_culturable_bias by Olaf_Ilzins on 2008-05-23 20:37:19 as ** along with 2 people and 1 group vrich jdelcampo Microbial-Ecology
  • Cultivating the uncultured
    PNAS, Vol. 99, No. 24. (26 November 2002), pp. 15681-15686.
    by Karsten Zengler, Gerardo Toledo, Michael Rappe, James Elkins, Eric J Mathur, Jay M Short, Martin Keller
    posted to microbial_diversity cultures culturable_non_culturable_bias by Olaf_Ilzins on 2008-05-23 20:22:07 as ** along with 3 people and 1 group mcox jdelcampo rvgomes Microbial-Ecology
  • Interpreting Ecological Diversity Indices Applied to Terminal Restriction Fragment Length Polymorphism Data: Insights from Simulated Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 16. (15 August 2007), pp. 5276-5283.
    by Christopher B Blackwood, Deborah Hudleston, Donald R Zak, Jeffrey S Buyer
    posted to validation statistics rflp molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-05-06 21:24:52 as **
  • Quantitative and Qualitative beta Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 5. (1 March 2007), pp. 1576-1585.
    by Catherine A Lozupone, Micah Hamady, Scott T Kelley, Rob Knight
    posted to phylogeny microbial_diversity 16s by Olaf_Ilzins on 2008-05-06 21:17:09 as ** along with 1 person and 1 group djkt iSEEM
  • Comparison of Two Fingerprinting Techniques, Terminal Restriction Fragment Length Polymorphism and Automated Ribosomal Intergenic Spacer Analysis, for Determination of Bacterial Diversity in Aquatic Environments
    Appl. Environ. Microbiol., Vol. 72, No. 9. (1 September 2006), pp. 5982-5989.
    by R Danovaro, GM Luna, A Dell'anno, B Pietrangeli
    posted to molecular_techniques microbial_diversity frlp arisa by Olaf_Ilzins on 2008-05-06 21:05:10 as **
  • Comparison of Different Primer Sets for Use in Automated Ribosomal Intergenic Spacer Analysis of Complex Bacterial Communities
    Appl. Environ. Microbiol., Vol. 70, No. 10. (1 October 2004), pp. 6147-6156.
    by Massimiliano Cardinale, Lorenzo Brusetti, Paola Quatrini, Sara Borin, Anna M Puglia, Aurora Rizzi, Elisabetta Zanardini, Claudia Sorlini, Cesare Corselli, Daniele Daffonchio
    posted to molecular_techniques microbial_diversity arisa by Olaf_Ilzins on 2008-05-06 21:04:26 as **
  • Status of the Microbial Census
    Microbiol. Mol. Biol. Rev., Vol. 68, No. 4. (1 December 2004), pp. 686-691.
    by Patrick D Schloss, Jo Handelsman
    posted to molecular_techniques microbial_diversity bacterial_taxonomy by Olaf_Ilzins on 2008-05-06 19:34:07 as *** along with 1 person mcox
  • Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
    Appl. Environ. Microbiol., Vol. 67, No. 10. (1 October 2001), pp. 4399-4406.
    by Jennifer B Hughes, Jessica J Hellmann, Taylor H Ricketts, Brendan J Bohannan
    posted to statistics review microbial_diversity indicators by Olaf_Ilzins on 2008-04-30 20:40:30 as *** along with 6 people and 2 groups djkt mcox vrich jmeppley Stenuite andrewirwin iSEEM Biological oceanography
  • Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.
    J Bacteriol, Vol. 186, No. 9. (May 2004), pp. 2629-2635.
    by SG Acinas, LA Marcelino, V Klepac-Ceraj, MF Polz
    posted to validation statistics molecular_techniques microbial_diversity bacterial_taxonomy 16s by Olaf_Ilzins on 2008-04-30 20:09:54 as ** along with 1 person mcox
  • Microbial diversity in the deep sea and the underexplored "rare biosphere"
    Proc Natl Acad Sci U S A (31 July 2006)
    by Mitchell L L Sogin, Hilary G G Morrison, Julie A A Huber, David Mark M Welch, Susan M M Huse, Phillip R R Neal, Jesus M M Arrieta, Gerhard J J Herndl
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-04-29 20:38:17 as *** along with 8 people and 1 group mcox jmeppley balicea madhadron rabu bluto xingxu kinestetika microbiology_nijmegen
  • Unexpectedly High Bacterial Diversity in Arctic Tundra Relative to Boreal Forest Soils, Revealed by Serial Analysis of Ribosomal Sequence Tags
    Appl. Environ. Microbiol., Vol. 71, No. 10. (1 October 2005), pp. 5710-5718.
    by Josh D Neufeld, William W Mohn
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-04-29 20:27:39 as *** along with 1 person mcox
  • Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem
    PNAS, Vol. 104, No. 8. (20 February 2007), pp. 2761-2766.
    by Alban Ramette, James M Tiedje
    posted to statistics microbial_diversity indicators by Olaf_Ilzins on 2008-04-29 16:09:23 as ** along with 1 person CareyNadell
  • Microbial Diversity in Natural Asphalts of the Rancho La Brea Tar Pits
    Appl. Environ. Microbiol., Vol. 73, No. 14. (15 July 2007), pp. 4579-4591.
    by Jong-Shik Kim, David E Crowley
    posted to petroleum microbial_diversity by Olaf_Ilzins on 2008-04-23 17:03:55 as ***
  • The Microbial Community Structure in Petroleum-Contaminated Sediments Corresponds to Geophysical Signatures
    Appl. Environ. Microbiol., Vol. 73, No. 9. (1 May 2007), pp. 2860-2870.
    by Jonathan P Allen, Estella A Atekwana, Eliot A Atekwana, Joseph W Duris, Dale D Werkema, Silvia Rossbach
    posted to petroleum microbial_diversity by Olaf_Ilzins on 2008-04-23 16:54:29 as ***
  • Microbial diversity and soil functions
    European Journal of Soil Science, Vol. 54, No. 4. (2003), pp. 655-670.
    by P Nannipieri, J Ascher, MT Ceccherini, L Landi, G Pietramellara, G Renella
    posted to microbial_diversity review by Olaf_Ilzins on 2008-04-18 22:01:07 as **
  • Assessment of the rind microbial diversity in a farmhouse-produced vs a pasteurized industrially produced soft red-smear cheese using both cultivation and rDNA-based methods
    Journal of Applied Microbiology, Vol. 97, No. 3. (2004), pp. 546-556.
    by C Feurer, F Irlinger, HE Spinnler, P Glaser, T Vallaeys
    posted to culturable_non_culturable_bias microbial_diversity molecular_techniques sscp by Olaf_Ilzins on 2008-04-18 21:23:45 as **
  • Bacterial Diversity and Community Structure in an Aerated Lagoon Revealed by Ribosomal Intergenic Spacer Analyses and 16S Ribosomal DNA Sequencing
    Appl. Environ. Microbiol., Vol. 67, No. 4. (1 April 2001), pp. 1565-1574.
    by Zhongtang Yu, William W Mohn
    posted to 23s microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 21:15:47 as **
  • Uncultured archaea in deep marine subsurface sediments: have we caught them all?
    ISME J, Vol. 2, No. 1. (November 2007), pp. 3-18.
    by Andreas Teske, Ketil B Sorensen
    posted to microbial_diversity review by Olaf_Ilzins on 2008-04-18 20:57:01 as ** along with 2 people skato_toyaku vrich
  • Composition of Soil Microbial Communities Enriched on a Mixture of Aromatic Hydrocarbons
    Appl. Environ. Microbiol., Vol. 66, No. 12. (1 December 2000), pp. 5282-5289.
    by Anne E Greene, Jason G Kay, Karim Jaber, Les G Stehmeier, Gerrit Voordouw
    posted to microbial_diversity rsgp by Olaf_Ilzins on 2008-04-18 20:31:58 as **
  • Composition of Toluene-Degrading Microbial Communities from Soil at Different Concentrations of Toluene
    Appl. Environ. Microbiol., Vol. 65, No. 7. (1 July 1999), pp. 3064-3070.
    by Casey Hubert, Yin Shen, Gerrit Voordouw
    posted to biodegradation culturable_non_culturable_bias cultures microbial_diversity petroleum rsgp by Olaf_Ilzins on 2008-04-18 20:28:31 as **
  • Effect of Nitrate Injection on the Microbial Community in an Oil Field as Monitored by Reverse Sample Genome Probing
    Appl. Environ. Microbiol., Vol. 63, No. 5. (1 May 1997), pp. 1785-1793.
    by Aj Telang, S Ebert, Jm Foght, Dws Westlake, Ge Jenneman, D Gevertz, G Voordouw
    posted to microbial_diversity molecular_techniques rsgp by Olaf_Ilzins on 2008-04-18 20:01:13 as ** along with 1 person rabu
  • Multivariate analyses in microbial ecology
    FEMS Microbiology Ecology, Vol. 62, No. 2. (2007), pp. 142-160.
    by Alban Ramette
    posted to microbial_diversity review statistics by Olaf_Ilzins on 2008-04-18 19:51:49 as ** along with 4 people and 1 group JochimsenMC vrich jmeppley Stenuite Microbial-Ecology
  • Culture-Dependent and Culture-Independent Characterization of Microbial Assemblages Associated with High-Temperature Petroleum Reservoirs
    Appl. Environ. Microbiol., Vol. 66, No. 2. (1 February 2000), pp. 700-711.
    by VJ Orphan, LT Taylor, D Hafenbradl, EF Delong
    posted to culturable_non_culturable_bias microbial_diversity by Olaf_Ilzins on 2008-04-18 19:31:51 as *****
  • Microbial diversity - insights from population genetics
    Environmental Microbiology, Vol. 0, No. 0. (0000), pp. ???-???.
    by Ted H Mes
    posted to microbial_diversity review by Olaf_Ilzins on 2008-04-18 16:49:03 as ** along with 4 people and 2 groups jmeppley kinestetika Katje Thaverkamp Microbial-Ecology microbiology_nijmegen
  • Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment
    Appl. Environ. Microbiol., Vol. 68, No. 10. (1 October 2002), pp. 5064-5081.
    by Alexander Loy, Angelika Lehner, Natuschka Lee, Justyna Adamczyk, Harald Meier, Jens Ernst, Karl-Heinz Schleifer, Michael Wagner
    posted to microarray microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:47:28 as **
  • 16S rRNA Gene-Based Oligonucleotide Microarray for Environmental Monitoring of the Betaproteobacterial Order "Rhodocyclales"
    Appl. Environ. Microbiol., Vol. 71, No. 3. (1 March 2005), pp. 1373-1386.
    by Alexander Loy, Claudia Schulz, Sebastian Lucker, Andreas Schopfer-Wendels, Kilian Stoecker, Christian Baranyi, Angelika Lehner, Michael Wagner
    posted to microarray microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:44:49 as **
  • Microarray and Functional Gene Analyses of Sulfate-Reducing Prokaryotes in Low-Sulfate, Acidic Fens Reveal Cooccurrence of Recognized Genera and Novel Lineages
    Appl. Environ. Microbiol., Vol. 70, No. 12. (1 December 2004), pp. 6998-7009.
    by Alexander Loy, Kirsten Kusel, Angelika Lehner, Harold L Drake, Michael Wagner
    posted to microarray microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:19:14 as *
  • Simultaneous analysis of microbial identity and function using NanoSIMS
    Environmental Microbiology, Vol. 0, No. 0. (0), pp. ???-???.
    by Tianlun Li, Ting Di Wu, Laurent Mazeas, Laurent Toffin, Jean, Gerard Leblon, Theodore Bouchez
    posted to microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:12:10 as ** along with 1 person and 1 group Katje microbiology_nijmegen
  • Understanding Bias in Microbial Community Analysis Techniques due to rrn Operon Copy Number Heterogeneity
    BioTechniques, Vol. 34 (April 2003), pp. 790-802.
    by LD Crosby, CS Criddle
    posted to indicators microbial_diversity review_genomic statistics validation by Olaf_Ilzins on 2008-04-18 16:07:32 as ***
  • Comparison of Soil Bacterial Communities in Rhizospheres of Three Plant Species and the Interspaces in an Arid Grassland
    Appl. Environ. Microbiol., Vol. 68, No. 4. (1 April 2002), pp. 1854-1863.
    by Cheryl R Kuske, Lawrence O Ticknor, Mark E Miller, John M Dunbar, Jody A Davis, Susan M Barns, Jayne Belnap
    posted to microbial_diversity rflp by Olaf_Ilzins on 2008-04-18 15:32:33 as **
  • Assessment of Microbial Diversity in Four Southwestern United States Soils by 16S rRNA Gene Terminal Restriction Fragment Analysis
    Appl. Environ. Microbiol., Vol. 66, No. 7. (1 July 2000), pp. 2943-2950.
    by John Dunbar, Lawrence O Ticknor, Cheryl R Kuske
    posted to microbial_diversity molecular_techniques rflp by Olaf_Ilzins on 2008-04-18 15:23:53 as **
  • Phylogenetic Specificity and Reproducibility and New Method for Analysis of Terminal Restriction Fragment Profiles of 16S rRNA Genes from Bacterial Communities
    Appl. Environ. Microbiol., Vol. 67, No. 1. (1 January 2001), pp. 190-197.
    by John Dunbar, Lawrence O Ticknor, Cheryl R Kuske
    posted to microbial_diversity molecular_techniques rflp validation by Olaf_Ilzins on 2008-04-18 15:12:07 as **
  • Levels of Bacterial Community Diversity in Four Arid Soils Compared by Cultivation and 16S rRNA Gene Cloning
    Appl. Environ. Microbiol., Vol. 65, No. 4. (1 April 1999), pp. 1662-1669.
    by John Dunbar, Shannon Takala, Susan M Barns, Jody A Davis, Cheryl R Kuske
    posted to microbial_diversity molecular_techniques rflp by Olaf_Ilzins on 2008-04-18 14:25:46 as ** along with 1 person mcox
  • Empirical and Theoretical Bacterial Diversity in Four Arizona Soils
    Appl. Environ. Microbiol., Vol. 68, No. 6. (1 June 2002), pp. 3035-3045.
    by John Dunbar, Susan M Barns, Lawrence O Ticknor, Cheryl R Kuske
    posted to indicators microbial_diversity statistics by Olaf_Ilzins on 2008-04-18 14:23:59 as *** along with 1 person mcox
  • Microbial Diversity in a Hydrocarbon- and Chlorinated-Solvent-Contaminated Aquifer Undergoing Intrinsic Bioremediation
    Appl. Environ. Microbiol., Vol. 64, No. 10. (1 October 1998), pp. 3869-3877.
    by Michael A Dojka, Philip Hugenholtz, Sheridan K Haack, Norman R Pace
    posted to bioremediation microbial_diversity rflp by Olaf_Ilzins on 2008-04-17 21:56:09 as **
  • Expanding the Known Diversity and Environmental Distribution of an Uncultured Phylogenetic Division of Bacteria
    Appl. Environ. Microbiol., Vol. 66, No. 4. (1 April 2000), pp. 1617-1621.
    by Michael A Dojka, Kirk J Harris, Norman R Pace
    posted to microbial_diversity by Olaf_Ilzins on 2008-04-17 21:53:19 as **
  • Serial Analysis of rRNA Genes and the Unexpected Dominance of Rare Members of Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 14. (15 July 2007), pp. 4532-4542.
    by Matthew N Ashby, Jasper Rine, Emmanuel F Mongodin, Karen E Nelson, Dago Dimster-Denk
    posted to microbial_diversity molecular_techniques srts by Olaf_Ilzins on 2008-04-17 21:47:18 as **
  • Radioisotopic, Culture-Based, and Oligonucleotide Microchip Analyses of Thermophilic Microbial Communities in a Continental High-Temperature Petroleum Reservoir
    Appl. Environ. Microbiol., Vol. 69, No. 10. (1 October 2003), pp. 6143-6151.
    by Elizaveta A Bonch-Osmolovskaya, Margarita L Miroshnichenko, Alexander V Lebedinsky, Nikolai A Chernyh, Tamara N Nazina, Valery S Ivoilov, Sergey S Belyaev, Eugenia S Boulygina, Yury P Lysov, Alexander N Perov, Andrei D Mirzabekov, Hans Hippe, Erko Stackebrandt, Stephane L'Haridon, Christian Jeanthon
    posted to culturable_non_culturable_bias cultures microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-17 16:13:06 as *****
  • Environmental Whole-Genome Amplification To Access Microbial Populations in Contaminated Sediments
    Appl. Environ. Microbiol., Vol. 72, No. 5. (1 May 2006), pp. 3291-3301.
    by Carl B Abulencia, Denise L Wyborski, Joseph A Garcia, Mircea Podar, Wenqiong Chen, Sherman H Chang, Hwai W Chang, David Watson, Eoin L Brodie, Terry C Hazen, Martin Keller
    posted to microbial_diversity metagenomics by Olaf_Ilzins on 2008-04-16 21:30:18 as *** along with 2 people mcox vrich
  • Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 10. (15 May 2007), pp. 3205-3214.
    by Mircea Podar, Carl B Abulencia, Marion Walcher, Don Hutchison, Karsten Zengler, Joseph A Garcia, Trevin Holland, David Cotton, Loren Hauser, Martin Keller
    posted to microbial_diversity metagenomics by Olaf_Ilzins on 2008-04-16 21:28:16 as *** along with 2 people and 2 groups vaulot vrich Papers recommended by the Roscoff Plankton Group Microbial-Ecology
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