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OndrejMarsalek Список просмотра [282 articles]

Недавние статьи, OndrejMarsalek которые соответствуют критериям списка просмотра
  • Some Topics in the Theory of Fluids
    The Journal of Chemical Physics, Vol. 39, No. 11. (1963), pp. 2808-2812.
    by B Widom
    posted to statmek computing by mikaellund on 2008-10-14 13:59:54 as **
  • Reentrant Condensation of Proteins in Solution Induced by Multivalent Counterions
    Physical Review Letters, Vol. 101, No. 14. (2008)
    by F Zhang, MWA Skoda, RMJ Jacobs, S Zorn, RA Martin, CM Martin, GF Clark, S Weggler, A Hildebrandt, O Kohlbacher, F Schreiber
    posted to protein ion-correlation aggregation by mikaellund on 2008-10-04 07:55:09 as **
  • Phosphate Recognition in Structural Biology
    Angewandte Chemie International Edition, Vol. 46, No. 3. (2007), pp. 338-352.
    by Anna k, Felix r, François Diederich
    posted to protein phosphate ion-binding by mikaellund on 2008-10-03 10:41:42 as **
  • Crystal structure of M tuberculosis ABC phosphate transport receptor: specificity and charge compensation dominated by ion-dipole interactions.
    Structure (London, England : 1993), Vol. 11, No. 7. (July 2003), pp. 765-774.
    by NK Vyas, MN Vyas, FA Quiocho
    posted to phosphate ion-binding by mikaellund on 2008-10-03 10:34:47 as **
  • Atomic structure of a nitrate-binding protein crucial for photosynthetic productivity
    Proceedings of the National Academy of Sciences, Vol. 103, No. 26. (27 June 2006), pp. 9820-9825.
    by Nicole M Koropatkin, Himadri B Pakrasi, Thomas J Smith
    posted to nitrate ion-binding hofmeister by mikaellund on 2008-10-03 10:27:45 as ** along with 1 person sternvolmer
  • Protein-Protein Interaction Investigated by Steered Molecular Dynamics: The TCR-pMHC Complex
    Biophys. J., Vol. 95, No. 8. (15 October 2008), pp. 3575-3590.
    by Michel A Cuendet, Olivier Michielin
    posted to md aggregation by mikaellund on 2008-10-03 08:35:33 as ** along with 2 people softsimu paulschlesinger
  • Coarse-Grained Simulations of the Membrane-Active Antimicrobial Peptide Maculatin 1.1
    Biophys. J. (18 July 2008), biophysj.108.128686.
    by Peter J Bond, Daniel L Parton, James F Clark, Mark S Sansom
    posted to lipid coarse-graining by mikaellund on 2008-10-03 08:31:22 as ** along with 2 people agrossfield paulschlesinger
  • Ions in water: characterizing the forces that control chemical processes and biological structure.
    Biophysical chemistry, Vol. 128, No. 2-3. (July 2007), pp. 95-104.
    by KD Collins, GW Neilson, JE Enderby
    posted to ionpair hofmeister by mikaellund on 2008-10-01 15:58:04 as **
  • Evaluation of weak ion association between tetraalkylammonium ions and inorganic anions in aqueous solutions by capillary zone electrophoresis.
    Journal of chromatography. A, Vol. 1022, No. 1-2. (2 January 2004), pp. 191-200.
    by J Mbuna, T Takayanagi, M Oshima, S Motomizu
    posted to taa hofmeister by mikaellund on 2008-10-01 15:04:35 as **
  • Ions from the Hofmeister series and osmolytes: effects on proteins in solution and in the crystallization process
    Methods, Vol. 34, No. 3. (November 2004), pp. 300-311.
    by Kim D Collins
    posted to hofmeister by mikaellund on 2008-10-01 14:52:18 as **
  • Salt-Specific Stability and Denaturation of a Short Salt-Bridge-Forming α-Helix
    J. Am. Chem. Soc. (27 September 2008)
    by Joachim Dzubiella
    posted to ion-binding hofmeister by mikaellund on 2008-10-01 13:30:36 as ** along with 1 person paulschlesinger
  • The Influence of Dipole Moment Fluctuations on the Dielectric Increment of Proteins in Solution
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 38, No. 10. (October 1952), pp. 855-862.
    by John G Kirkwood, John B Shumaker
    posted to titration protein charge-regulation by mikaellund on 2008-09-25 15:06:46 as **
  • Ion Pairing
    Chemical Reviews, Vol. 106, No. 11. (2006), pp. 4585-4621.
    by Y Marcus, G Hefter
    posted to ionpair by mikaellund on 2008-09-25 13:24:56 as **
  • Specific Ion Binding to Nonpolar Surface Patches of Proteins
    J. Am. Chem. Soc., Vol. 130 (8 August 2008), pp. 11582-11583.
    by Mikael Lund, Lubos Vrbka, Pavel Jungwirth
    posted to protein ion-binding hydrophobic hofmeister by mikaellund on 2008-09-25 11:42:51 as ** along with 2 people paulschlesinger agrossfield
  • Effect of Ions on a Dipalmitoyl Phosphatidylcholine Bilayer. A Molecular Dynamics Simulation Study
    J. Phys. Chem. B (15 January 2008)
    by A Cordomi, O Edholm, JJ Perez
    posted to membrane-ions by robertvacha on 2008-09-21 16:14:14 as ** along with 3 people and 1 group sobolevnrm softsimu dimka baker-group
  • Many-body effects in molecular dynamics simulations of Na[sup + ](H[sub 2]O)[sub n] and Cl[sup - ](H[sub 2]O)[sub n] clusters
    The Journal of Chemical Physics, Vol. 95, No. 3. (1991), pp. 1954-1963.
    by Lalith Perera, Max L Berkowitz
    posted to airwater by robertvacha on 2008-09-21 15:42:49 as **
  • Molecular dynamics simulations of asymmetric NaCl and KCl solutions separated by phosphatidylcholine bilayers: potential drops and structural changes induced by strong Na+-lipid interactions and finite size effects
    Biophys. J. (25 January 2008), biophysj.107.116335.
    by Sun-Joo Lee, Yuhua Song, Nathan A Baker
    posted to membrane-ions by robertvacha on 2008-09-21 15:38:53 as ** along with 4 people and 1 group sunhwan sunnytov sobolevnrm paulschlesinger baker-group
  • Diffuse scattering provides material parameters and electron density profiles of biomembranes
    Physical Review E, Vol. 69, No. 4. (30 April 2004), 040901.
    by Yufeng Liu, John F Nagle
    posted to membrane by robertvacha on 2008-09-21 15:29:48 as ** along with 1 person softsimu
  • Parameters of Monovalent Ions in the AMBER-99 Forcefield: Assessment of Inaccuracies and Proposed Improvements
    J. Phys. Chem. B (22 September 2007)
    by AA Chen, RV Pappu
    posted to ions ion-pairing by robertvacha on 2008-09-21 15:27:52 as ** along with 2 people and 1 group sobolevnrm middledomain baker-group
  • Spontaneous Formation of KCl Aggregates in Biomolecular Simulations: A Force Field Issue?
    J. Chem. Theory Comput., Vol. 3, No. 5. (11 September 2007), pp. 1851-1859.
    by P Auffinger, TE Cheatham, AC Vaiana
    posted to ions ion-pairing by robertvacha on 2008-09-21 15:24:51 as ** along with 1 person softsimu
  • Particle mesh Ewald: An N [center-dot] log(N) method for Ewald sums in large systems
    The Journal of Chemical Physics, Vol. 98, No. 12. (1993), pp. 10089-10092.
    by Tom Darden, Darrin York, Lee Pedersen
    posted to gromacs by robertvacha on 2008-09-21 15:11:26 as ** along with 8 people A_Coletta_Thesis mleis and_ped10 allmensch easybakemuffin RamuAnandakrishnan tji ashaytan
  • Biomolecular simulations of membranes: Physical properties from different force fields
    The Journal of Chemical Physics, Vol. 128, No. 12. (2008)
    by Shirley WI Siu, Robert Vácha, Pavel Jungwirth, Rainer A Böckmann
    posted to membrane-ions by robertvacha on 2008-09-21 15:03:55 as ** along with 3 people and 1 group sobolevnrm paulschlesinger sunhwan baker-group
  • Free-energy analysis of solubilization in micelle
    The Journal of Chemical Physics, Vol. 124, No. 15. (2006)
    by Nobuyuki Matubayasi, Kuo K Liang, Masaru Nakahara
    posted to free energy by robertvacha on 2008-09-09 12:03:12 as **
  • Chemical equilibrium of formaldehyde and methanediol in hot water: Free-energy analysis of the solvent effect
    Journal of Molecular Liquids, Vol. 134, No. 1-3. (15 May 2007), pp. 58-63.
    by Nobuyuki Matubayasi, Saiko Morooka, Masaru Nakahara, Hideaki Takahashi
    posted to free energy by robertvacha on 2008-09-09 12:02:17 as **
  • An approach to the solvation free energy in terms of the distribution functions of the solute-solvent interaction energy
    Journal of Molecular Liquids, Vol. 119, No. 1-3. (15 May 2005), pp. 23-29.
    by Nobuyuki Matubayasi, Masaru Nakahara
    posted to no-tag by robertvacha on 2008-09-09 12:01:16 as **
  • A novel quantum mechanical/molecular mechanical approach to the free energy calculation for isomerization of glycine in aqueous solution
    The Journal of Chemical Physics, Vol. 123, No. 12. (2005)
    by Hideaki Takahashi, Yuko Kawashima, Tomoshige Nitta, Nobuyuki Matubayasi
    posted to free energy by robertvacha on 2008-09-05 15:07:50 as **
  • Theory of solutions in the energy representation. III. Treatment of the molecular flexibility
    The Journal of Chemical Physics, Vol. 119, No. 18. (2003), pp. 9686-9702.
    by Nobuyuki Matubayasi, Masaru Nakahara
    posted to free energy by robertvacha on 2008-09-05 14:57:13 as **
  • Theory of solutions in the energy representation. II. Functional for the chemical potential
    The Journal of Chemical Physics, Vol. 117, No. 8. (2002), pp. 3605-3616.
    by Nobuyuki Matubayasi, Masaru Nakahara
    posted to free energy by robertvacha on 2008-09-05 14:56:39 as **
  • Theory of solutions in the energetic representation. I. Formulation
    The Journal of Chemical Physics, Vol. 113, No. 15. (2000), pp. 6070-6081.
    by Nobuyuki Matubayasi, Masaru Nakahara
    posted to free energy by robertvacha on 2008-09-05 14:56:00 as **
  • pH Dependence of Antibody/Lysozyme Complexation
    Biochemistry, Vol. 36, No. 50. (16 December 1997), pp. 15599-15614.
    by CJ Gibas, S Subramaniam, JA Mccammon, BC Braden, RJ Poljak
    posted to aggregation antibody continuum-model electrostatic protein by mikaellund on 2008-08-27 09:33:45 as **
  • Computer modeling of electrostatic steering and orientational effects in antibody-antigen association.
    Biophysical journal, Vol. 68, No. 3. (March 1995), pp. 807-814.
    by RE Kozack, MJ d'Mello, S Subramaniam
    posted to alignment electrostatic protein by mikaellund on 2008-08-26 10:53:29 as **
  • Computer simulations and theoretical aspects of the depletion interaction in protein-oligomer mixtures
    The Journal of Chemical Physics, Vol. 127, No. 3. (2007)
    by M Bončina, J Reščič, Yu, V Vlachy
    posted to aggregation macromolecules ph protein polymers by mikaellund on 2008-08-17 14:55:14 as **
  • Solubility of Lysozyme in Polyethylene Glycol-Electrolyte Mixtures: The Depletion Interaction and Ion-Specific Effects
    Biophys. J., Vol. 95, No. 3. (1 August 2008), pp. 1285-1294.
    by Matjaz Boncina, Jurij Rescic, Vojko Vlachy
    posted to aggregation hofmeister polymers protein by mikaellund on 2008-08-17 14:53:03 as **
  • The Amber biomolecular simulation programs.
    J Comput Chem, Vol. 26, No. 16. (December 2005), pp. 1668-1688.
    by DA Case, TE Cheatham, T Darden, H Gohlke, R Luo, KM Merz, A Onufriev, C Simmerling, B Wang, RJ Woods
    posted to computing md by mikaellund on 2008-07-30 16:21:11 as ** along with 10 people and 3 groups lna jwm ttjoseph xdeupi tovrstra bilab RamuAnandakrishnan IrinaMoreira adilson_mohr gisle Radiation_Damage Stressosome LabCompMed
  • Permeation Process of Small Molecules across Lipid Membranes Studied by Molecular Dynamics Simulations
    J. Phys. Chem., Vol. 100, No. 41. (10 October 1996), pp. 16729-16738.
    by SJ Marrink, HJC Berendsen
    posted to membrane by robertvacha on 2008-07-24 08:25:27 as ** along with 2 people andreasauerwein ashaytan
  • Article DOI Lookup
    posted to membrane water by robertvacha on 2008-07-24 08:24:04 as **
  • Continuum molecular electrostatics, salt effects and counterion binding. A review of the Poisson-Boltzmann theory and its modifications.
    Biopolymers, Vol. 9999, No. 9999. (2007), NA.
    by Paweł Grochowski, Joanna Trylska
    posted to continuum-model ion-binding by mikaellund on 2008-07-22 22:01:36 as ** along with 2 people and 1 group sobolevnrm softsimu baker-group
  • An Electrostatic Steering Mechanism of Cdc42 Recognition by Wiskott-Aldrich Syndrome Proteins
    Molecular Cell, Vol. 20, No. 2. (28 October 2005), pp. 313-324.
    by Lars Hemsath, Radovan Dvorsky, Dennis Fiegen, Marie-France Carlier, Mohammad R Ahmadian
    posted to alignment electrostatic protein by mikaellund on 2008-07-08 09:25:02 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Salt Enhances Calmodulin-Target Interaction
    Biophys. J., Vol. 90, No. 8. (15 April 2006), pp. 2903-2910.
    by Ingemar Andre, Tonu Kesvatera, Bo Jonsson, Sara Linse
    posted to aggregation electrostatic protein by mikaellund on 2008-07-08 08:49:08 as **
  • Salting the Charged Surface: pH and Salt Dependence of Protein G B1 Stability
    Biophys. J., Vol. 90, No. 8. (15 April 2006), pp. 2911-2921.
    by Stina Lindman, Wei-Feng Xue, Olga Szczepankiewicz, Mikael C Bauer, Hanna Nilsson, Sara Linse
    posted to electrostatic protein by mikaellund on 2008-07-08 08:45:42 as **
  • How Hofmeister ion interactions affect protein stability.
    Biophys. J., Vol. 71, No. 4. (1 October 1996), pp. 2056-2063.
    by RL Baldwin
    posted to aggregation hofmeister protein by mikaellund on 2008-07-08 08:39:31 as **
  • Why forces between proteins follow different Hofmeister series for pH above and below pI
    Biophysical Chemistry, Vol. 117, No. 3. (3 October 2005), pp. 217-224.
    by M Boström, FW Tavares, S Finet, F Skouri-Panet, A Tardieu, BW Ninham
    posted to aggregation hofmeister ion-binding protein by mikaellund on 2008-07-07 14:46:06 as **
  • The Hofmeister effect as seen by SAXS in protein solutions
    Current Opinion in Colloid & Interface Science, Vol. 9, No. 1-2. (August 2004), pp. 112-116.
    by S Finet, F Skouri-Panet, M Casselyn, F Bonneté, A Tardieu
    posted to aggregation hofmeister protein virial by mikaellund on 2008-07-07 13:53:54 as **
  • Ion Specific Protein Assembly and Hydrophobic Surface Forces
    Phys. Rev. Lett., Vol. 100, No. 25. (2008), 258105.
    by Mikael Lund, Pavel Jungwirth, Clifford E Woodward
    posted to aggregation hofmeister hydrophobic ion-binding by mikaellund on 2008-06-26 18:24:08 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Forces between Protein Molecules in Solution Arising from Fluctuations in Proton Charge and Configuration
    Proc Natl Acad Sci USA, Vol. 38 (1952), pp. 863-71.
    by J Kirkwood, J Shumaker
    posted to electrostatic protein statmek titration by mikaellund on 2008-06-25 11:58:00 as **
  • Equation of State Calculations by Fast Computing Machines
    J.~Chem. Phys., Vol. 21 (1953), pp. 1087-1097.
    by NA Metropolis, AW Rosenbluth, MN Rosenbluth, A Teller, E Teller
    posted to statmek by mikaellund on 2008-06-25 11:54:23 as **
  • Untersuchungen Über Ionenassoziation. I.
    Kgl. Danske Vid. Selsk. Mat.-fys. Medd., Vol. 7, No. 9. (1926), pp. 1-48.
    by N Bjerrum
    posted to continuum-model statmek by mikaellund on 2008-06-25 11:52:42 as **
  • Specific Ion Effects in Solutions of Globular Proteins: Comparison between Analytical Models and S imulation
    Journal of Physical Chemistry B, Vol. 109, No. 51. (2005), pp. 24489-24494.
    by M Bostrom, FW Tavares, D Bratko, BW Ninham
    posted to continuum-model hofmeister by mikaellund on 2008-06-25 11:51:03 as **
  • Theory of the Stability of Lyophobic Colloids
    (1948)
    by EJW Verwey, Th
    posted to continuum-model by mikaellund on 2008-06-25 11:49:21 as **
  • Theory of the Stability of Strongly Charged Lyophobic Sols and of the Adhesion of Strongly Charged Particles in Solutions of Electrolytes
    Acta Phys. Chim. URSS, Vol. 14 (1941), pp. 633-662.
    by BV Derjaguin, L Landau
    posted to continuum-model by mikaellund on 2008-06-25 11:48:42 as **
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